Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005066

Physical Location & Seq

Genomic Coordinates Forward (+)

25576643 .. 25583810

Gene Structure 7168 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0240600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGAGGGAGATACAGTGCGCAGTGAACATCAGGAGGAAGAAGAAGAAGAAGAAGAATATGTATTGCTTGACCTTGATTCTGTTTACTCCCAGCTTCAGATTCCACCAAACACACCATATGTACTTTCAGGTTTGGATACAATGCAACCGGTATTGATTCTAGATGGCAAATTTAAGTTGATTGGTCAGTGGGATGAGACAATTGGGACATGTCTTTTTTTCAAAGAGGAAGTTGTCCCTGTTGTTCATGAAGAAACAGGACCATCAGAAGCAAACCTTTTTGCTGGCAAATGCATTGTTGATCAAAAGCAATCTTCAAGCAAGCAAGTAAAACCAGTTGGCCGTACTCATAGGATTCTAAAATTCAGATTGGCACCAGATTTTGACCCTCCTAATACTGCATCCGCACAGACTGAGCAAGTAAATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000120 GO:0000976 GO:0001013 GO:0001046 GO:0001047 GO:0001067 GO:0001163 GO:0001164 GO:0001188 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005668 GO:0005730 GO:0006139 GO:0006351 GO:0006352 GO:0006360 GO:0006361 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0016070 GO:0018130 GO:0019438 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0065004 GO:0070013 GO:0070860 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1990837

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RRN7

Protein Analysis

143

Amino Acids

16.1

Weight (kDa)

4.46

Isoelectric Point (pI)

55.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFIIIC_sub6	PF10419	15 - 123	1.3e-17	TFIIIC subunit triple barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Orthologous Genes (Group: OG0005066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42615 AT2G02955
fragaria_vesca	FvH4_3g26291
malus_domestica	MD04G1025400.v1.1
prunus_persica	Prupe.1G174900_v2.0.a1 Prupe.1G174900_v2.0.a1
pyrus_communis	pycom04g02160
rosa_chinensis	RchiOBHm_Chr5g0048631 RchiOBHm_Chr5g0048641 RchiOBHm_Chr7g0220011 RchiOBHm_Chr7g0220021
rosa_laevigata	RLG00000002264 RLG00000034545
rosa_multiflora	Rmu_sc0005838.1_g000011 Rmu_sc0011175.1_g000001 Rmu_sc0017790.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033160 Rroxscaffold_3G00239820
rosa_rugosa	Rorug05G0240600 Rorug07G0188400
rosa_samantha	Rh5AG319800 Rh5BG330000 Rh5CG356000 Rh5DG341200 Rh7AG332200 Rh7CG349700 Rh7DG327900
rosa_wichuraiana	Rw5G029910 Rw5G030190 Rw7G027980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	20
AccB1I	GGYRCC	1 cut(s)	373
AciI	CCGC	1 cut(s)	405
AcoI	YGGCCR	1 cut(s)	340
AcsI	RAATTY	3 cut(s)	170, 362, 424
AcuI	CTGAAG	1 cut(s)	80
AfaI	GTAC	2 cut(s)	123, 346
AflIII	ACRYGT	1 cut(s)	209
AgeI	ACCGGT	1 cut(s)	148
AgsI	TTSAA	2 cut(s)	223, 318
AluBI	AGCT	1 cut(s)	94
AluI	AGCT	1 cut(s)	94
Alw26I	GTCTC	1 cut(s)	191
AoxI	GGCC	1 cut(s)	340
ApoI	RAATTY	3 cut(s)	170, 362, 424
AsiGI	ACCGGT	1 cut(s)	148
AspLEI	GCGC	1 cut(s)	21
AspS9I	GGNCC	1 cut(s)	260
AvaII	GGWCC	1 cut(s)	260
BanI	GGYRCC	1 cut(s)	373
BccI	CCATC	2 cut(s)	158, 271
BceAI	ACGGC	1 cut(s)	327
BciVI	GTATCC	1 cut(s)	130
BclI	TGATCA	1 cut(s)	301
BcoDI	GTCTC	1 cut(s)	191
BfaI	CTAG	1 cut(s)	161
BfuI	GTATCC	1 cut(s)	130
Bme18I	GGWCC	1 cut(s)	260
BmgT120I	GGNCC	1 cut(s)	260
BmiI	GGNNCC	1 cut(s)	375
BmsI	GCATC	1 cut(s)	410
BsaWI	WCCGGW	1 cut(s)	148
BsaXI	ACNNNNNCTCC	1 cut(s)	30
Bse118I	RCCGGY	1 cut(s)	148
Bse1I	ACTGG	1 cut(s)	335
BseGI	GGATG	2 cut(s)	199, 401
BseMII	CTCAG	1 cut(s)	405
BseNI	ACTGG	1 cut(s)	335
BseYI	CCCAGC	1 cut(s)	90
BshFI	GGCC	1 cut(s)	342
BshNI	GGYRCC	1 cut(s)	373
BshTI	ACCGGT	1 cut(s)	148
BsiSI	CCGG	1 cut(s)	149
BslFI	GGGAC	2 cut(s)	220, 221
BsmAI	GTCTC	1 cut(s)	191
BsmFI	GGGAC	2 cut(s)	220, 221
BsnI	GGCC	1 cut(s)	342
Bsp143I	GATC	1 cut(s)	301
BspACI	CCGC	1 cut(s)	405
BspANI	GGCC	1 cut(s)	342
BspCNI	CTCAG	1 cut(s)	406
BspHI	TCATGA	1 cut(s)	247
BspLI	GGNNCC	1 cut(s)	375
BspT107I	GGYRCC	1 cut(s)	373
BsrFI	RCCGGY	1 cut(s)	148
BsrI	ACTGG	1 cut(s)	335
BssAI	RCCGGY	1 cut(s)	148
BssMI	GATC	1 cut(s)	301
Bst4CI	ACNGT	1 cut(s)	16
BstC8I	GCNNGC	2 cut(s)	286, 323
BstDEI	CTNAG	1 cut(s)	414
BstF5I	GGATG	2 cut(s)	199, 401
BstHHI	GCGC	1 cut(s)	21
BstKTI	GATC	1 cut(s)	304
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	1 cut(s)	301
BstNSI	RCATGY	1 cut(s)	213
BsuI	GTATCC	1 cut(s)	130
BsuRI	GGCC	1 cut(s)	342
BtsCI	GGATG	2 cut(s)	199, 401
BtsI	GCAGTG	1 cut(s)	28
BtsIMutI	CAGTG	3 cut(s)	21, 28, 194
Cac8I	GCNNGC	2 cut(s)	286, 323
CciI	TCATGA	1 cut(s)	247
CfoI	GCGC	1 cut(s)	21
Cfr10I	RCCGGY	1 cut(s)	148
Cfr13I	GGNCC	1 cut(s)	260
Csp6I	GTAC	2 cut(s)	122, 345
CspAI	ACCGGT	1 cut(s)	148
CviAII	CATG	2 cut(s)	210, 248
CviJI	RGCY	2 cut(s)	94, 342
CviKI_1	RGCY	2 cut(s)	94, 342
CviQI	GTAC	2 cut(s)	122, 345
DdeI	CTNAG	1 cut(s)	414
DpnI	GATC	1 cut(s)	303
DpnII	GATC	1 cut(s)	301
EaeI	YGGCCR	1 cut(s)	340
Eco47I	GGWCC	1 cut(s)	260
Eco57I	CTGAAG	1 cut(s)	80
EcoT22I	ATGCAT	1 cut(s)	296
FaeI	CATG	2 cut(s)	213, 251
FaiI	YATR	6 cut(s)	60, 118, 120, 211, 249, 351
FalI	AAGNNNNNCTT	2 cut(s)	261, 293
FaqI	GGGAC	2 cut(s)	220, 221
FatI	CATG	2 cut(s)	209, 247
FauNDI	CATATG	1 cut(s)	118
FbaI	TGATCA	1 cut(s)	301
FokI	GGATG	2 cut(s)	206, 388
FspBI	CTAG	1 cut(s)	161
FspI	TGCGCA	1 cut(s)	20
GlaI	GCGC	1 cut(s)	20
GsaI	CCCAGC	1 cut(s)	94
HaeIII	GGCC	1 cut(s)	342
HapII	CCGG	1 cut(s)	149
HhaI	GCGC	1 cut(s)	21
Hin1II	CATG	2 cut(s)	213, 251
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HinfI	GANTC	4 cut(s)	77, 100, 157, 355
HpaII	CCGG	1 cut(s)	149
Hpy166II	GTNNAC	2 cut(s)	26, 85
Hpy188I	TCNGA	3 cut(s)	99, 268, 368
Hpy188III	TCNNGA	3 cut(s)	32, 161, 248
Hpy8I	GTNNAC	2 cut(s)	26, 85
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4V	TGCA	3 cut(s)	145, 294, 401
HpyF3I	CTNAG	1 cut(s)	414
Hsp92II	CATG	2 cut(s)	213, 251
HspAI	GCGC	1 cut(s)	19
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	1 cut(s)	301
LpnPI	CCDG	9 cut(s)	17, 104, 114, 162, 243, 252, 270, 348, 390
LweI	GCATC	1 cut(s)	410
MaeI	CTAG	1 cut(s)	161
MalI	GATC	1 cut(s)	303
MboI	GATC	1 cut(s)	301
MboII	GAAGA	8 cut(s)	50, 53, 56, 59, 62, 65, 263, 306
MfeI	CAATTG	1 cut(s)	201
MluCI	AATT	4 cut(s)	170, 201, 362, 424
MnlI	CCTC	3 cut(s)	28, 220, 399
Mph1103I	ATGCAT	1 cut(s)	296
MseI	TTAA	1 cut(s)	174
MspI	CCGG	1 cut(s)	149
MunI	CAATTG	1 cut(s)	201
NdeI	CATATG	1 cut(s)	118
NdeII	GATC	1 cut(s)	301
NlaIII	CATG	2 cut(s)	213, 251
NlaIV	GGNNCC	1 cut(s)	375
NsbI	TGCGCA	1 cut(s)	20
NsiI	ATGCAT	1 cut(s)	296
NspI	RCATGY	1 cut(s)	213
PagI	TCATGA	1 cut(s)	247
PciI	ACATGT	1 cut(s)	209
PfeI	GAWTC	4 cut(s)	77, 100, 157, 355
PinAI	ACCGGT	1 cut(s)	148
PscI	ACATGT	1 cut(s)	209
PspFI	CCCAGC	1 cut(s)	90
PspN4I	GGNNCC	1 cut(s)	375
PspPI	GGNCC	1 cut(s)	260
RsaI	GTAC	2 cut(s)	123, 346
RsaNI	GTAC	2 cut(s)	122, 345
SaqAI	TTAA	1 cut(s)	174
Sau3AI	GATC	1 cut(s)	301
Sau96I	GGNCC	1 cut(s)	260
SetI	ASST	4 cut(s)	75, 96, 133, 279
SfaNI	GCATC	1 cut(s)	410
SinI	GGWCC	1 cut(s)	260
Sse9I	AATT	4 cut(s)	170, 201, 362, 424
SsiI	CCGC	1 cut(s)	405
SspMI	CTAG	1 cut(s)	161
TaaI	ACNGT	1 cut(s)	16
TasI	AATT	4 cut(s)	170, 201, 362, 424
TatI	WGTACW	1 cut(s)	121
TfiI	GAWTC	4 cut(s)	77, 100, 157, 355
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	3 cut(s)	21, 28, 194
TspDTI	ATGAA	2 cut(s)	236, 264
TspRI	CASTG	3 cut(s)	21, 28, 194
VpaK11BI	GGWCC	1 cut(s)	260
XapI	RAATTY	3 cut(s)	170, 362, 424
XbaI	TCTAGA	1 cut(s)	160
XceI	RCATGY	1 cut(s)	213
XspI	CTAG	1 cut(s)	161
Zsp2I	ATGCAT	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.