Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0005066

Physical Location & Seq

Genomic Coordinates Reverse (-)

39682995 .. 39686150

Gene Structure 3156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG349700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2193 bp

ATGGGGAACCCAGATACATGGCGTTGCCAGAATTGCGGCAATGTGGGGCTAGAAGATGGTGATGATGGCTTCTTCTATTGCACCCAGTGCAACTCACAAGCCGAGGACTTCATGGACACCGGCGTGGCGGATGAGGACTTCCTCGACCAGACTGGCAACCCATTTGGAGGCCTCTACTCTGCTCGTCACACCCGTCGCATTAACAGCTCTGTTGTCAAACCAGAGCCCCTCTCTGAACCCTTAGACGACTTGTCACCTCATTATCAGCTGTTTAGTCAAAGCCAAGCTAAAACTGAAGATCAGGATCCCATAGGGCTCGAGGATTTTTCATTTGATGGGAGAAAGAATGAGGACTATTACGGATGGATTAGGCTTAGGTATGTGATGGGATTGCAACGGATGATTGAGCTCCAATGTGAGGCTTTGGTCACGGAGTTAAAGGTAAATCCCTTGATATGTGGTTTGGCTGGGACCATTTGGCTCCGCTTCTTGGCTGGGACTCAGGTTTTCAATGATGATTGTTCTGACCAGATCTTTGACTCCAATGAGTCTGAGATCCGCCAACAAGGAGAACCACCTGAAAATTTGAAGATGCCTTCTAGAAGCCATGCACAACATCATGCAAAGTATGACCCTCAAGCAGTGAAGGCGTGGTTTAGGTCCTTGAAGAAGATTATACCACTATCTTATACTCTAGCTGTTTCTTTTTTGGCTTGTCATCTTGCCAGGGAAGCAGTACTGGCAACCGACATGGTAAAATGGTCCCTAGAAGGAAAGCTCCCATATTTTGCTGCTTTTCTTGAAATTGAAAATGATCTGAAACAGTTTGGACAGCCTTCACGTGCCTGCCCAATAAGTTCAAGCTTGATGTTTAGGCCTTCTGAATCAGTTCCAGTGCAGAAGCTAGAATCACTAGCGGTGTCTGTTGCTGGGTCCATAGGCTTGGACTTACCTCCAGTCAATTTCTATGCTATCGCTTCTCGCTTTCTAAATAAGTTATCTCTTCCGGTCGAAAAGATTCTCCCTCATGCGTGCCGCATATATGAGTGGTCAATGCCTCCAGAGTTATGGTTATCTACAAACGAGTTGAGGCTTCCAACTCGTGTTTGTGTGATGTCAATACTGATTGTAGCTGTGAGAATTCTTTATAATATTCATGGTTTTGGAGAATGGGAAAGAAGTTTGTGCAGTCGACATGCTTCATCTTCCACATCTAACAATTGTGGAGATGAGGACCCCAGATCCAGTTGTGAAATGAAGGATGATGCTGATAAGGATTCAGAAGCTCTGCCTCACAGTAAAGATGATTCAGATACAAACTTTCTTAGAAACTTATCGCGTGCACATAACTCTAAGTTGGATACTGCAGAACTTTTGGCCAACCTTGAAGCAAGACATAATGAAATTGCTGATGACTATGAATATTGCAAGGACTTGCCAACATATCTCCAGTTCTGCAAGGATACAGTCTTTGCTAGATCAGAACCATCGCGTAAGGATGCCAAGGAGGAAAAGTTAATTGAATCTTTATGGAACTTCTATCAAAGTGGAAAGGATTCTGATACTGCAGTGGGGCAAGGATTGCATAGTGGTAGAACTGATGACCAGAAAAGACCAAGGTATAATGAAGAATGCACTAGTAGTAGTCCATCTAGAGAAAAGAAGCTTAGGACGCCATCCTCCAATGACGAAACTTCTCTCGCAGATGACCGTAAGAGGAGCCAAAATGGTGCTCATTTTGGTGATAGCTCACAGAATAGTCAGAACTCAGAAGTGAATGACCAAGAATTAGCTGAGACTCTCAAAGAGGAAGCCATTAATAGAATGAAATTAGACATGGAGGAGAAGAGGTTCTGTTATATTCCACCAAGGGTGAATCTCAAAAGATTTGATTACCTTCACTATGTGAGGAAGCAGGATGAAGGTGCCTACACTTACGTTGCACATGCTGACTACTACATACTGCTTCGTGCTTGCTCTAGAGTTGCCCAAGTTGAAACTCGGTGTATGCACATTGGGGTGTTGAGCTTTGAGAGGAGACTGGCTTGGTTGGAGAAAAGAATCGACCACTGCTTGCACTTGACCCCTCCTATTGTATCATGTGATTATTGTACTGACATGGTTCCTGAGAACACTACTGATGCAGAAACAATTGTTGAGGAATCGATTGGACTTTCAAATTTGAATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000120 GO:0000976 GO:0001013 GO:0001046 GO:0001047 GO:0001067 GO:0001163 GO:0001164 GO:0001188 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005668 GO:0005730 GO:0006139 GO:0006351 GO:0006352 GO:0006360 GO:0006361 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0016070 GO:0018130 GO:0019438 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0065004 GO:0070013 GO:0070860 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1990837

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RRN7

Protein Analysis

730

Amino Acids

82.98

Weight (kDa)

5.09

Isoelectric Point (pI)

60.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rrn7_cyclin_N	PF20644	131 - 266	8.6e-10	Rrn7/TAF1B, N-terminal cyclin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42615 AT2G02955
fragaria_vesca	FvH4_3g26291
malus_domestica	MD04G1025400.v1.1
prunus_persica	Prupe.1G174900_v2.0.a1 Prupe.1G174900_v2.0.a1
pyrus_communis	pycom04g02160
rosa_chinensis	RchiOBHm_Chr5g0048631 RchiOBHm_Chr5g0048641 RchiOBHm_Chr7g0220011 RchiOBHm_Chr7g0220021
rosa_laevigata	RLG00000002264 RLG00000034545
rosa_multiflora	Rmu_sc0005838.1_g000011 Rmu_sc0011175.1_g000001 Rmu_sc0017790.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033160 Rroxscaffold_3G00239820
rosa_rugosa	Rorug05G0240600 Rorug07G0188400
rosa_samantha	Rh5AG319800 Rh5BG330000 Rh5CG356000 Rh5DG341200 Rh7AG332200 Rh7CG349700 Rh7DG327900
rosa_wichuraiana	Rw5G029910 Rw5G030190 Rw7G027980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1149
AccB1I	GGYRCC	1 cut(s)	1925
AccI	GTMKAC	1 cut(s)	1192
AccII	CGCG	2 cut(s)	1339, 1492
AciI	CCGC	6 cut(s)	36, 128, 484, 559, 917, 1036
AclWI	GGATC	4 cut(s)	299, 312, 550, 1236
AcoI	YGGCCR	1 cut(s)	1377
AcsI	RAATTY	3 cut(s)	583, 1140, 2179
AcuI	CTGAAG	1 cut(s)	315
AcvI	CACGTG	1 cut(s)	842
AcyI	GRCGYC	1 cut(s)	1673
AdeI	CACNNNGTG	2 cut(s)	87, 1906
AfaI	GTAC	2 cut(s)	738, 2113
AfiI	CCNNNNNNNGG	3 cut(s)	167, 418, 490
AhdI	GACNNNNNGTC	1 cut(s)	250
AhlI	ACTAGT	1 cut(s)	1637
AjnI	CCWGG	1 cut(s)	725
AleI	CACNNNNGTG	1 cut(s)	122
AloI	GAACNNNNNNTCC	2 cut(s)	1835, 1867
Alw21I	GWGCWC	3 cut(s)	411, 1345, 1735
Alw26I	GTCTC	2 cut(s)	1790, 2032
Alw44I	GTGCAC	1 cut(s)	1341
AlwI	GGATC	4 cut(s)	299, 312, 550, 1236
Ama87I	CYCGRG	1 cut(s)	317
AoxI	GGCC	3 cut(s)	169, 875, 1377
ApaLI	GTGCAC	1 cut(s)	1341
ApeKI	GCWGC	1 cut(s)	791
ApoI	RAATTY	3 cut(s)	583, 1140, 2179
ArsI	GACNNNNNNTTYG	2 cut(s)	518, 550
AseI	ATTAAT	1 cut(s)	1818
Asp700I	GAANNNNTTC	4 cut(s)	888, 1017, 1555, 1850
AspS9I	GGNCC	5 cut(s)	471, 660, 762, 933, 1234
AsuHPI	GGTGA	4 cut(s)	71, 246, 1754, 1885
AvaI	CYCGRG	1 cut(s)	317
AvaII	GGWCC	5 cut(s)	471, 660, 762, 933, 1234
BaeGI	GKGCMC	1 cut(s)	1345
BaeI	ACNNNNGTAYC	2 cut(s)	1554, 1587
BalI	TGGCCA	1 cut(s)	1379
BamHI	GGATCC	1 cut(s)	304
BanI	GGYRCC	1 cut(s)	1925
BanII	GRGCYC	3 cut(s)	228, 318, 411
BauI	CACGAG	1 cut(s)	1101
BbrPI	CACGTG	1 cut(s)	842
Bbv12I	GWGCWC	3 cut(s)	411, 1345, 1735
BbvI	GCAGC	1 cut(s)	778
BccI	CCATC	8 cut(s)	50, 59, 329, 357, 379, 1495, 1657, 1684
BciT130I	CCWGG	1 cut(s)	727
BciVI	GTATCC	2 cut(s)	1354, 1456
BcoDI	GTCTC	2 cut(s)	1790, 2032
BcuI	ACTAGT	1 cut(s)	1637
BfmI	CTRYAG	2 cut(s)	1365, 1566
BfuI	GTATCC	2 cut(s)	1354, 1456
BglII	AGATCT	1 cut(s)	531
BisI	GCNGC	3 cut(s)	37, 792, 1036
BlsI	GCNGC	3 cut(s)	38, 793, 1037
BmcAI	AGTACT	1 cut(s)	738
Bme1390I	CCNGG	1 cut(s)	727
Bme18I	GGWCC	5 cut(s)	471, 660, 762, 933, 1234
BmeRI	GACNNNNNGTC	1 cut(s)	250
BmeT110I	CYCGRG	1 cut(s)	317
BmgT120I	GGNCC	5 cut(s)	471, 660, 762, 933, 1234
BmrFI	CCNGG	1 cut(s)	727
BmrI	ACTGGG	1 cut(s)	79
BmsI	GCATC	4 cut(s)	582, 1255, 1489, 2131
BmuI	ACTGGG	1 cut(s)	79
BplI	GAGNNNNNCTC	2 cut(s)	215, 247
BpmI	CTGGAG	3 cut(s)	939, 1044, 1433
Bpu10I	CCTNAGC	2 cut(s)	374, 1667
BpuEI	CTTGAG	1 cut(s)	621
Bsa29I	ATCGAT	1 cut(s)	2165
BsaAI	YACGTR	1 cut(s)	842
BsaBI	GATNNNNATC	1 cut(s)	303
BsaHI	GRCGYC	1 cut(s)	1673
BsaJI	CCNNGG	5 cut(s)	102, 726, 1503, 1616, 1868
BsaWI	WCCGGW	1 cut(s)	1006
BsaXI	ACNNNNNCTCC	4 cut(s)	1499, 1529, 1835, 1865
Bsc4I	CCNNNNNNNGG	3 cut(s)	167, 418, 490
Bse118I	RCCGGY	1 cut(s)	119
Bse1I	ACTGG	8 cut(s)	85, 157, 744, 893, 956, 1245, 1450, 2046
Bse3DI	GCAATG	1 cut(s)	46
Bse8I	GATNNNNATC	1 cut(s)	303
BseBI	CCWGG	1 cut(s)	727
BseCI	ATCGAT	1 cut(s)	2165
BseDI	CCNNGG	5 cut(s)	102, 726, 1503, 1616, 1868
BseGI	GGATG	7 cut(s)	136, 368, 405, 1267, 1504, 1676, 1924
BseJI	GATNNNNATC	1 cut(s)	303
BseLI	CCNNNNNNNGG	3 cut(s)	167, 418, 490
BseMI	GCAATG	1 cut(s)	46
BseMII	CTCAG	5 cut(s)	515, 543, 1782, 1785, 2118
BseNI	ACTGG	8 cut(s)	85, 157, 744, 893, 956, 1245, 1450, 2046
BseRI	GAGGAG	3 cut(s)	1732, 1856, 2050
BseSI	GKGCMC	1 cut(s)	1345
BseXI	GCAGC	1 cut(s)	778
BseYI	CCCAGC	3 cut(s)	467, 494, 929
BsgI	GTGCAG	2 cut(s)	917, 1207
Bsh1236I	CGCG	2 cut(s)	1339, 1492
Bsh1285I	CGRYCG	1 cut(s)	1011
BshFI	GGCC	3 cut(s)	171, 877, 1379
BshNI	GGYRCC	1 cut(s)	1925
BshVI	ATCGAT	1 cut(s)	2165
BsiEI	CGRYCG	1 cut(s)	1011
BsiHKAI	GWGCWC	3 cut(s)	411, 1345, 1735
BsiHKCI	CYCGRG	1 cut(s)	317
BsiSI	CCGG	2 cut(s)	120, 1007
BslFI	GGGAC	3 cut(s)	484, 511, 748
BslI	CCNNNNNNNGG	3 cut(s)	167, 418, 490
BsmAI	GTCTC	2 cut(s)	1790, 2032
BsmFI	GGGAC	3 cut(s)	484, 511, 748
BsmI	GAATGC	1 cut(s)	1637
BsnI	GGCC	3 cut(s)	171, 877, 1379
BsoBI	CYCGRG	1 cut(s)	317
Bsp1286I	GDGCHC	5 cut(s)	228, 318, 411, 1345, 1735
Bsp143I	GATC	7 cut(s)	298, 304, 531, 555, 814, 1241, 1478
BspACI	CCGC	6 cut(s)	36, 128, 484, 559, 917, 1036
BspANI	GGCC	3 cut(s)	171, 877, 1379
BspCNI	CTCAG	5 cut(s)	514, 544, 1781, 1786, 2119
BspDI	ATCGAT	1 cut(s)	2165
BspFNI	CGCG	2 cut(s)	1339, 1492
BspMAI	CTGCAG	2 cut(s)	1369, 1570
BspPI	GGATC	4 cut(s)	299, 312, 550, 1236
BspT107I	GGYRCC	1 cut(s)	1925
BsrDI	GCAATG	1 cut(s)	46
BsrFI	RCCGGY	1 cut(s)	119
BsrI	ACTGG	8 cut(s)	85, 157, 744, 893, 956, 1245, 1450, 2046
BssAI	RCCGGY	1 cut(s)	119
BssECI	CCNNGG	5 cut(s)	102, 726, 1503, 1616, 1868
BssMI	GATC	7 cut(s)	298, 304, 531, 555, 814, 1241, 1478
BssNI	GRCGYC	1 cut(s)	1673
BssSI	CACGAG	1 cut(s)	1101
BssT1I	CCWWGG	3 cut(s)	1503, 1616, 1868
Bst2BI	CACGAG	1 cut(s)	1101
Bst2UI	CCWGG	1 cut(s)	727
Bst4CI	ACNGT	4 cut(s)	825, 1298, 1468, 1712
Bst6I	CTCTTC	2 cut(s)	1008, 1841
BstACI	GRCGYC	1 cut(s)	1673
BstAPI	GCANNNNNTGC	2 cut(s)	87, 1582
BstBAI	YACGTR	1 cut(s)	842
BstC8I	GCNNGC	5 cut(s)	847, 1033, 1341, 1975, 2075
BstF5I	GGATG	7 cut(s)	136, 368, 405, 1267, 1504, 1676, 1924
BstFNI	CGCG	2 cut(s)	1339, 1492
BstKTI	GATC	7 cut(s)	301, 307, 534, 558, 817, 1244, 1481
BstMAI	GTCTC	2 cut(s)	1790, 2032
BstMBI	GATC	7 cut(s)	298, 304, 531, 555, 814, 1241, 1478
BstMCI	CGRYCG	1 cut(s)	1011
BstMWI	GCNNNNNNNGC	8 cut(s)	33, 87, 204, 647, 731, 740, 1582, 1672
BstNI	CCWGG	1 cut(s)	727
BstNSI	RCATGY	2 cut(s)	1199, 1949
BstSCI	CCNGG	1 cut(s)	725
BstSFI	CTRYAG	2 cut(s)	1365, 1566
BstSLI	GKGCMC	1 cut(s)	1345
BstUI	CGCG	2 cut(s)	1339, 1492
BstV1I	GCAGC	1 cut(s)	778
BstX2I	RGATCY	4 cut(s)	304, 531, 555, 1241
BstXI	CCANNNNNNTGG	3 cut(s)	18, 943, 1068
BstYI	RGATCY	4 cut(s)	304, 531, 555, 1241
Bsu15I	ATCGAT	1 cut(s)	2165
BsuI	GTATCC	2 cut(s)	1354, 1456
BsuRI	GGCC	3 cut(s)	171, 877, 1379
BsuTUI	ATCGAT	1 cut(s)	2165
BtgZI	GCGATG	1 cut(s)	1473
BtsCI	GGATG	7 cut(s)	136, 368, 405, 1267, 1504, 1676, 1924
BtsI	GCAGTG	3 cut(s)	648, 1575, 2068
BtsIMutI	CAGTG	5 cut(s)	92, 648, 900, 1575, 2068
Cac8I	GCNNGC	5 cut(s)	847, 1033, 1341, 1975, 2075
Cfr10I	RCCGGY	1 cut(s)	119
Cfr13I	GGNCC	5 cut(s)	471, 660, 762, 933, 1234
ClaI	ATCGAT	1 cut(s)	2165
CseI	GACGC	1 cut(s)	1681
Csp6I	GTAC	2 cut(s)	737, 2112
CviQI	GTAC	2 cut(s)	737, 2112
DpnI	GATC	7 cut(s)	300, 306, 533, 557, 816, 1243, 1480
DpnII	GATC	7 cut(s)	298, 304, 531, 555, 814, 1241, 1478
DraIII	CACNNNGTG	2 cut(s)	87, 1906
DriI	GACNNNNNGTC	1 cut(s)	250
EaeI	YGGCCR	1 cut(s)	1377
Eam1104I	CTCTTC	2 cut(s)	1008, 1841
Eam1105I	GACNNNNNGTC	1 cut(s)	250
EarI	CTCTTC	2 cut(s)	1008, 1841
EciI	GGCGGA	2 cut(s)	143, 548
Ecl136II	GAGCTC	1 cut(s)	409
Eco130I	CCWWGG	3 cut(s)	1503, 1616, 1868
Eco147I	AGGCCT	2 cut(s)	171, 877
Eco24I	GRGCYC	3 cut(s)	228, 318, 411
Eco47I	GGWCC	5 cut(s)	471, 660, 762, 933, 1234
Eco53kI	GAGCTC	1 cut(s)	409
Eco57I	CTGAAG	1 cut(s)	315
Eco72I	CACGTG	1 cut(s)	842
Eco88I	CYCGRG	1 cut(s)	317
EcoICRI	GAGCTC	1 cut(s)	409
EcoO109I	RGGNCCY	2 cut(s)	660, 1234
EcoRI	GAATTC	1 cut(s)	1140
EcoRII	CCWGG	1 cut(s)	725
EcoT14I	CCWWGG	3 cut(s)	1503, 1616, 1868
EcoT38I	GRGCYC	3 cut(s)	228, 318, 411
ErhI	CCWWGG	3 cut(s)	1503, 1616, 1868
FaqI	GGGAC	3 cut(s)	484, 511, 748
FblI	GTMKAC	1 cut(s)	1192
Fnu4HI	GCNGC	3 cut(s)	37, 792, 1036
FokI	GGATG	7 cut(s)	143, 375, 412, 1274, 1511, 1663, 1931
FriOI	GRGCYC	3 cut(s)	228, 318, 411
Fsp4HI	GCNGC	3 cut(s)	37, 792, 1036
GluI	GCNGC	3 cut(s)	37, 792, 1036
GsaI	CCCAGC	3 cut(s)	471, 498, 933
GsuI	CTGGAG	3 cut(s)	939, 1044, 1433
HaeIII	GGCC	3 cut(s)	171, 877, 1379
HapII	CCGG	2 cut(s)	120, 1007
HgaI	GACGC	1 cut(s)	1681
Hin1I	GRCGYC	1 cut(s)	1673
HincII	GTYRAC	1 cut(s)	1193
HindII	GTYRAC	1 cut(s)	1193
HindIII	AAGCTT	2 cut(s)	862, 1664
HpaII	CCGG	2 cut(s)	120, 1007
HphI	GGTGA	4 cut(s)	71, 246, 1754, 1885
Hpy166II	GTNNAC	2 cut(s)	1193, 1343
Hpy188III	TCNNGA	7 cut(s)	302, 600, 800, 1061, 1653, 1980, 2126
Hpy8I	GTNNAC	2 cut(s)	1193, 1343
Hpy99I	CGWCG	1 cut(s)	198
HpyAV	CCTTC	8 cut(s)	606, 640, 764, 846, 888, 1252, 1907, 1916
HpyCH4III	ACNGT	4 cut(s)	825, 1298, 1468, 1712
HpyCH4IV	ACGT	2 cut(s)	841, 1938
HpyF10VI	GCNNNNNNNGC	8 cut(s)	33, 87, 204, 647, 731, 740, 1582, 1672
HpySE526I	ACGT	2 cut(s)	841, 1938
Hsp92I	GRCGYC	1 cut(s)	1673
Kzo9I	GATC	7 cut(s)	298, 304, 531, 555, 814, 1241, 1478
LmnI	GCTCC	4 cut(s)	414, 486, 783, 1719
Lsp1109I	GCAGC	1 cut(s)	778
LweI	GCATC	4 cut(s)	582, 1255, 1489, 2131
MaeII	ACGT	2 cut(s)	841, 1938
MaeIII	GTNAC	3 cut(s)	185, 252, 427
MalI	GATC	7 cut(s)	300, 306, 533, 557, 816, 1243, 1480
MboI	GATC	7 cut(s)	298, 304, 531, 555, 814, 1241, 1478
MfeI	CAATTG	2 cut(s)	1219, 2151
MflI	RGATCY	4 cut(s)	304, 531, 555, 1241
MhlI	GDGCHC	5 cut(s)	228, 318, 411, 1345, 1735
MlsI	TGGCCA	1 cut(s)	1379
MluNI	TGGCCA	1 cut(s)	1379
MlyI	GAGTC	4 cut(s)	493, 533, 557, 1792
MmeI	TCCRAC	3 cut(s)	1121, 1338, 2031
Mox20I	TGGCCA	1 cut(s)	1379
MroXI	GAANNNNTTC	4 cut(s)	888, 1017, 1555, 1850
MscI	TGGCCA	1 cut(s)	1379
MseI	TTAA	4 cut(s)	201, 437, 1517, 1818
MslI	CAYNNNNRTG	3 cut(s)	122, 1740, 2018
Msp20I	TGGCCA	1 cut(s)	1379
MspA1I	CMGCKG	1 cut(s)	268
MspI	CCGG	2 cut(s)	120, 1007
MspR9I	CCNGG	1 cut(s)	727
MunI	CAATTG	2 cut(s)	1219, 2151
Mva1269I	GAATGC	1 cut(s)	1637
MvaI	CCWGG	1 cut(s)	727
MvnI	CGCG	2 cut(s)	1339, 1492
MwoI	GCNNNNNNNGC	8 cut(s)	33, 87, 204, 647, 731, 740, 1582, 1672
NdeII	GATC	7 cut(s)	298, 304, 531, 555, 814, 1241, 1478
NmeAIII	GCCGAG	1 cut(s)	127
NmuCI	GTSAC	3 cut(s)	185, 252, 427
NspI	RCATGY	2 cut(s)	1199, 1949
OliI	CACNNNNGTG	1 cut(s)	122
PaeR7I	CTCGAG	1 cut(s)	317
PceI	AGGCCT	2 cut(s)	171, 877
PcsI	WCGNNNNNNNCGW	1 cut(s)	190
PctI	GAATGC	1 cut(s)	1637
PdmI	GAANNNNTTC	4 cut(s)	888, 1017, 1555, 1850
PkrI	GCNGC	3 cut(s)	38, 793, 1037
PleI	GAGTC	4 cut(s)	493, 533, 556, 1792
PmaCI	CACGTG	1 cut(s)	842
PmlI	CACGTG	1 cut(s)	842
PpsI	GAGTC	4 cut(s)	493, 533, 556, 1792
Ppu21I	YACGTR	1 cut(s)	842
PpuMI	RGGWCCY	2 cut(s)	660, 1234
PshBI	ATTAAT	1 cut(s)	1818
PsiI	TTATAA	1 cut(s)	1149
Psp124BI	GAGCTC	1 cut(s)	411
Psp5II	RGGWCCY	2 cut(s)	660, 1234
Psp6I	CCWGG	1 cut(s)	725
PspCI	CACGTG	1 cut(s)	842
PspFI	CCCAGC	3 cut(s)	467, 494, 929
PspGI	CCWGG	1 cut(s)	725
PspPI	GGNCC	5 cut(s)	471, 660, 762, 933, 1234
PspPPI	RGGWCCY	2 cut(s)	660, 1234
PspXI	VCTCGAGB	1 cut(s)	317
PstI	CTGCAG	2 cut(s)	1369, 1570
PsuI	RGATCY	4 cut(s)	304, 531, 555, 1241
PvuII	CAGCTG	1 cut(s)	268
RsaI	GTAC	2 cut(s)	738, 2113
RsaNI	GTAC	2 cut(s)	737, 2112
RseI	CAYNNNNRTG	3 cut(s)	122, 1740, 2018
SacI	GAGCTC	1 cut(s)	411
SalI	GTCGAC	1 cut(s)	1191
SaqAI	TTAA	4 cut(s)	201, 437, 1517, 1818
SatI	GCNGC	3 cut(s)	37, 792, 1036
Sau3AI	GATC	7 cut(s)	298, 304, 531, 555, 814, 1241, 1478
Sau96I	GGNCC	5 cut(s)	471, 660, 762, 933, 1234
ScaI	AGTACT	1 cut(s)	738
SchI	GAGTC	4 cut(s)	493, 533, 557, 1792
ScrFI	CCNGG	1 cut(s)	727
SduI	GDGCHC	5 cut(s)	228, 318, 411, 1345, 1735
SfaNI	GCATC	4 cut(s)	582, 1255, 1489, 2131
SfcI	CTRYAG	2 cut(s)	1365, 1566
Sfr274I	CTCGAG	1 cut(s)	317
SgrAI	CRCCGGYG	1 cut(s)	119
SinI	GGWCC	5 cut(s)	471, 660, 762, 933, 1234
SlaI	CTCGAG	1 cut(s)	317
SmiMI	CAYNNNNRTG	3 cut(s)	122, 1740, 2018
SmlI	CTYRAG	2 cut(s)	317, 636
SmoI	CTYRAG	2 cut(s)	317, 636
SpeI	ACTAGT	1 cut(s)	1637
SseBI	AGGCCT	2 cut(s)	171, 877
SsiI	CCGC	6 cut(s)	36, 128, 484, 559, 917, 1036
SspI	AATATT	2 cut(s)	1153, 1424
SstI	GAGCTC	1 cut(s)	411
StuI	AGGCCT	2 cut(s)	171, 877
StyD4I	CCNGG	1 cut(s)	725
StyI	CCWWGG	3 cut(s)	1503, 1616, 1868
TaaI	ACNGT	4 cut(s)	825, 1298, 1468, 1712
TaiI	ACGT	2 cut(s)	844, 1941
TaqI	TCGA	6 cut(s)	144, 318, 1011, 1192, 2064, 2165
TatI	WGTACW	2 cut(s)	736, 2111
TauI	GCSGC	2 cut(s)	39, 1038
Tru1I	TTAA	4 cut(s)	201, 437, 1517, 1818
Tru9I	TTAA	4 cut(s)	201, 437, 1517, 1818
TscAI	CASTG	5 cut(s)	92, 648, 900, 1575, 2075
TseFI	GTSAC	3 cut(s)	185, 252, 427
TseI	GCWGC	1 cut(s)	791
Tsp45I	GTSAC	3 cut(s)	185, 252, 427
TspGWI	ACGGA	3 cut(s)	375, 412, 446
TspRI	CASTG	5 cut(s)	92, 648, 900, 1575, 2075
VneI	GTGCAC	1 cut(s)	1341
VpaK11BI	GGWCC	5 cut(s)	471, 660, 762, 933, 1234
VspI	ATTAAT	1 cut(s)	1818
XapI	RAATTY	3 cut(s)	583, 1140, 2179
XbaI	TCTAGA	3 cut(s)	599, 1652, 1979
XceI	RCATGY	2 cut(s)	1199, 1949
XhoI	CTCGAG	1 cut(s)	317
XmiI	GTMKAC	1 cut(s)	1192
XmnI	GAANNNNTTC	4 cut(s)	888, 1017, 1555, 1850
ZrmI	AGTACT	1 cut(s)	738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.