Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005066

Physical Location & Seq

Genomic Coordinates Forward (+)

19237325 .. 19240482

Gene Structure 3158 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g26291.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2232 bp

ATGGGGAACCCAGATACATGGCGCTGCCAGAATTGCGGCAACGTGGGGCTGGAAGATGGTGATGATGGCTTCTTCTATTGCACCCAATGCAACTCACAAGCTGAGGACTTCATGGACACTGGCGTGGCGGATGAGGACTTTCTCGACCAGACTGGTAACCCATATGGAGGCCTCTACTCTGCTCGTCACACCCGTCGCGTTAACAGCTCTGTTGTCAAAGCAGAGCCTCTCTCCCAACCCTTAGACGACTTCTCACCTTATTATGAGCCCTTTAGTCAAAGCCAAGCTAAAACAGAAGATCAGGATCCCACAGGGCTCAAGGATTTTGCATTTGATGGGAGAGAGAATGATGAGGACTATTATGGGTGGATTAGGCTTAGGTATGTGATGGGATTGCAGCGGATGATTGAGCTCCAATGTGAGGCTTTAGTCACAGAGTTCAAGGTAACTCCCTTGATATGTGGTCTGGCTGGGACGGTTTGGCTCCGCTTCTTGGCTGGGACTCAGGTTCTTAATGATGATTGTGCTGACCATTCCTTTGACTTAAATGAGTCTGAGATCCCCCAACAAGGAGAACCGCTTGACAAATTGAAGACGCCTTTGAAAAGCCATGCACCTAATTATGCAAAGTATGACCCTCAAGCATTGAAGGCGTGGTTTAAGTCCTTGAAGAAGATTATACCATTATCTTACACTTTAGCTGTTTCTTTTCTGGCTTGTCATCTTGCCAGGGAAGCAGTCCTGCCAACTGACATGGTAAAATGGTCCCTAGAAGGGAAGCTCCCATATTTTGCTGCTTTTCTTGAAATTAAAGATGATCTGAAACAGTTTGGACAGCCTTCACGTGCCTGCCCAATAAGTTCAAGCTTGATGTTTAGGCCTTCTGAATCAGTTCCAGTGCAGAAGCTGGAATCACTAGCAGCATCTGTTGCTGGGTTTATAGGCTTGGACTTACCACCAGTCAATTTCTATGCTATAGCTTCCCGCTTTCTAAATAAGTTAGCTCTCCCAGTCAAAAAGATTCTCCCTCATGCGTGCCGCATATATGAGTGGTTGATGCCTCCAGAGTTATGGTTATCTACAAATGAGTTGAGGCTTCCCACTCGTGTTTGTGTGATGTCAATACTGATTGTAGCTGTGAGAATTCTTTATAACATTCATGGTTTTGGAGAATGGGAAAGAAGTTTGTCGAGTTGTCATGATTCATCTTCCATATCTAAAAATAGTGGTGATGAGGACCCCAGATCCAGTTGTGAAATAAAGGATGATGCTAATACATATTCAGATTCTCTGCCTCGCAGTAAAGATGATTCAGATACAAACTTTGATAGAGACTACTCGCACGCAGAAAACACTAAGTTGGATACTGCAAAACTTTTGGCCAACCTTGAAGCGAGTTATAATGAAATTGCTGATGACTATGAATATTGCAAGGACTTGCAAACATATCTCCAGTTCTGCAAGGATATAGTCTTTGCTAGATCAGAACCATCGCGTAAGGATGCCAAGGAAGAAAAGTTAATTGAAACTTTATGGAACTACTATCAAAGTGGAAAGGATTCTGATGCAGCAGCGGAACAGGGATTGCATTGTGGTAGAACTGATGACCAGAAAAGACCAAGGTATAATGAAGAATGCAGTAGTAGTCCATGTAGAGAAAAGAAGTTTAGGAGGCCATCTTCTTGTGAAGAAACTTTTCTCGAAGATGACCATCAGAATAGCCAAAATGGTGATCATTTTGGTGATAGCTCACATGATAGTAAGAACTCAGAAGTGAATGACCAAGGGTCAGCTGAGACTTTCAAAAATGAAGCCATTAATCGAATGAAATTAGACATGGAGGAGAAGAGGTTCTGTTATATTCCACCTAGGAAGAACCCCAAGAGATTTGATTACCTTCACTACGTGAGGAAGCAGGATGATGGCGCCTACACTTATGTTGCGCATGCTGACTACTACATAATGCTTCGTACATGCTCGAGAGTTGCCCAAGTCGAAATTCGGTGTATGCACATTGGAGTGCTGAGCTTTGAGAGAAGACTGGCTTGGTTGGAGAAGAGAATCGACCACTGCTTGCATTTGACCCCTCCTATTATATCATGTGAGTACTGTACTGAGAGGGTTCCTGAGAACACTACTGATGCAGAAACTACTGACATGGTTCCTGAGAACACTACTGATGCAGACACTATTGTTGAGGAATCGATTGGACTTTCAAATTTGAATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000120 GO:0000976 GO:0001013 GO:0001046 GO:0001047 GO:0001067 GO:0001163 GO:0001164 GO:0001188 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005668 GO:0005730 GO:0006139 GO:0006351 GO:0006352 GO:0006360 GO:0006361 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0016070 GO:0018130 GO:0019438 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0065004 GO:0070013 GO:0070860 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1990837

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RRN7

Protein Analysis

744

Amino Acids

84.66

Weight (kDa)

4.93

Isoelectric Point (pI)

54.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rrn7_cyclin_N	PF20644	132 - 267	2.3e-06	Rrn7/TAF1B, N-terminal cyclin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0005066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42615 AT2G02955
fragaria_vesca	FvH4_3g26291
malus_domestica	MD04G1025400.v1.1
prunus_persica	Prupe.1G174900_v2.0.a1 Prupe.1G174900_v2.0.a1
pyrus_communis	pycom04g02160
rosa_chinensis	RchiOBHm_Chr5g0048631 RchiOBHm_Chr5g0048641 RchiOBHm_Chr7g0220011 RchiOBHm_Chr7g0220021
rosa_laevigata	RLG00000002264 RLG00000034545
rosa_multiflora	Rmu_sc0005838.1_g000011 Rmu_sc0011175.1_g000001 Rmu_sc0017790.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033160 Rroxscaffold_3G00239820
rosa_rugosa	Rorug05G0240600 Rorug07G0188400
rosa_samantha	Rh5AG319800 Rh5BG330000 Rh5CG356000 Rh5DG341200 Rh7AG332200 Rh7CG349700 Rh7DG327900
rosa_wichuraiana	Rw5G029910 Rw5G030190 Rw7G027980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1152, 1401
Acc16I	TGCGCA	1 cut(s)	1944
AccB1I	GGYRCC	1 cut(s)	1925
AccII	CGCG	2 cut(s)	198, 1495
AciI	CCGC	8 cut(s)	36, 128, 400, 487, 578, 985, 1039, 1574
AclWI	GGATC	4 cut(s)	299, 312, 553, 1239
AcoI	YGGCCR	1 cut(s)	1380
AcsI	RAATTY	3 cut(s)	1143, 1998, 2218
AcvI	CACGTG	1 cut(s)	845
AcyI	GRCGYC	2 cut(s)	596, 1926
AdeI	CACNNNGTG	1 cut(s)	1906
AfaI	GTAC	3 cut(s)	1972, 2108, 2113
AfiI	CCNNNNNNNGG	5 cut(s)	167, 421, 493, 569, 774
AhdI	GACNNNNNGTC	1 cut(s)	1786
AjnI	CCWGG	1 cut(s)	728
AjuI	GAANNNNNNNTTGG	4 cut(s)	1983, 2015, 2029, 2061
AleI	CACNNNNGTG	1 cut(s)	122
AloI	GAACNNNNNNTCC	2 cut(s)	1835, 1867
Alw21I	GWGCWC	1 cut(s)	414
Alw26I	GTCTC	2 cut(s)	1326, 1790
AlwI	GGATC	4 cut(s)	299, 312, 553, 1239
AlwNI	CAGNNNCTG	2 cut(s)	907, 926
Ama87I	CYCGRG	1 cut(s)	1978
AoxI	GGCC	4 cut(s)	169, 878, 1380, 1673
ApeKI	GCWGC	6 cut(s)	24, 397, 794, 920, 1568, 1571
ApoI	RAATTY	3 cut(s)	1143, 1998, 2218
ArsI	GACNNNNNNTTYG	2 cut(s)	521, 553
AseI	ATTAAT	1 cut(s)	1818
Asp700I	GAANNNNTTC	4 cut(s)	891, 1558, 1695, 1850
AspA2I	CCTAGG	1 cut(s)	1868
AspLEI	GCGC	3 cut(s)	24, 1928, 1945
AspS9I	GGNCC	2 cut(s)	765, 1237
AsuHPI	GGTGA	5 cut(s)	71, 246, 1241, 1742, 1754
AvaI	CYCGRG	1 cut(s)	1978
AvaII	GGWCC	2 cut(s)	765, 1237
AvrII	CCTAGG	1 cut(s)	1868
BalI	TGGCCA	1 cut(s)	1382
BamHI	GGATCC	1 cut(s)	304
BanI	GGYRCC	1 cut(s)	1925
BanII	GRGCYC	3 cut(s)	270, 318, 414
BauI	CACGAG	1 cut(s)	1104
BbrPI	CACGTG	1 cut(s)	845
BbsI	GAAGAC	2 cut(s)	599, 2044
Bbv12I	GWGCWC	1 cut(s)	414
BbvCI	CCTCAGC	1 cut(s)	102
BbvI	GCAGC	6 cut(s)	11, 409, 781, 932, 1580, 1583
BccI	CCATC	8 cut(s)	50, 59, 329, 382, 1498, 1684, 1719, 1916
BciT130I	CCWGG	1 cut(s)	730
BciVI	GTATCC	1 cut(s)	1357
BclI	TGATCA	1 cut(s)	1732
BcoDI	GTCTC	2 cut(s)	1326, 1790
BfaI	CTAG	4 cut(s)	770, 917, 1479, 1869
BfmI	CTRYAG	1 cut(s)	975
BfoI	RGCGCY	2 cut(s)	25, 1929
BfuI	GTATCC	1 cut(s)	1357
BisI	GCNGC	8 cut(s)	25, 37, 398, 795, 921, 1039, 1569, 1572
BlnI	CCTAGG	1 cut(s)	1868
BlpI	GCTNAGC	1 cut(s)	2024
BlsI	GCNGC	8 cut(s)	26, 38, 399, 796, 922, 1040, 1570, 1573
BmcAI	AGTACT	1 cut(s)	2108
Bme1390I	CCNGG	1 cut(s)	730
Bme18I	GGWCC	2 cut(s)	765, 1237
BmeRI	GACNNNNNGTC	1 cut(s)	1786
BmeT110I	CYCGRG	1 cut(s)	1978
BmgT120I	GGNCC	2 cut(s)	765, 1237
BmiI	GGNNCC	8 cut(s)	8, 306, 485, 767, 1239, 1927, 2124, 2163
BmrFI	CCNGG	1 cut(s)	730
BmrI	ACTGGG	1 cut(s)	1004
BmsI	GCATC	7 cut(s)	932, 1047, 1258, 1492, 1555, 2131, 2170
BmuI	ACTGGG	1 cut(s)	1004
BpiI	GAAGAC	2 cut(s)	599, 2044
BplI	GAGNNNNNCTC	2 cut(s)	215, 247
BpmI	CTGGAG	2 cut(s)	1047, 1436
Bpu10I	CCTNAGC	2 cut(s)	102, 377
Bpu1102I	GCTNAGC	1 cut(s)	2024
BpuEI	CTTGAG	2 cut(s)	302, 624
Bsa29I	ATCGAT	1 cut(s)	2204
BsaAI	YACGTR	2 cut(s)	845, 1906
BsaBI	GATNNNNATC	2 cut(s)	303, 1710
BsaHI	GRCGYC	2 cut(s)	596, 1926
BsaJI	CCNNGG	5 cut(s)	729, 1506, 1619, 1783, 1868
BsaXI	ACNNNNNCTCC	2 cut(s)	1835, 1865
Bsc4I	CCNNNNNNNGG	5 cut(s)	167, 421, 493, 569, 774
Bse1I	ACTGG	8 cut(s)	124, 157, 896, 959, 1010, 1248, 1453, 2046
Bse8I	GATNNNNATC	2 cut(s)	303, 1710
BseBI	CCWGG	1 cut(s)	730
BseCI	ATCGAT	1 cut(s)	2204
BseDI	CCNNGG	5 cut(s)	729, 1506, 1619, 1783, 1868
BseGI	GGATG	5 cut(s)	136, 408, 1270, 1507, 1924
BseJI	GATNNNNATC	2 cut(s)	303, 1710
BseLI	CCNNNNNNNGG	5 cut(s)	167, 421, 493, 569, 774
BseMII	CTCAG	9 cut(s)	93, 518, 546, 1782, 1785, 2015, 2106, 2118, 2157
BseNI	ACTGG	8 cut(s)	124, 157, 896, 959, 1010, 1248, 1453, 2046
BseRI	GAGGAG	1 cut(s)	1856
BseXI	GCAGC	6 cut(s)	11, 409, 781, 932, 1580, 1583
BseYI	CCCAGC	3 cut(s)	470, 497, 932
BsgI	GTGCAG	1 cut(s)	920
Bsh1236I	CGCG	2 cut(s)	198, 1495
BshFI	GGCC	4 cut(s)	171, 880, 1382, 1675
BshNI	GGYRCC	1 cut(s)	1925
BshVI	ATCGAT	1 cut(s)	2204
BsiHKAI	GWGCWC	1 cut(s)	414
BsiHKCI	CYCGRG	1 cut(s)	1978
BslFI	GGGAC	3 cut(s)	487, 514, 751
BslI	CCNNNNNNNGG	5 cut(s)	167, 421, 493, 569, 774
BsmAI	GTCTC	2 cut(s)	1326, 1790
BsmFI	GGGAC	3 cut(s)	487, 514, 751
BsmI	GAATGC	1 cut(s)	1640
BsnI	GGCC	4 cut(s)	171, 880, 1382, 1675
BsoBI	CYCGRG	1 cut(s)	1978
Bsp1286I	GDGCHC	3 cut(s)	270, 318, 414
Bsp143I	GATC	7 cut(s)	298, 304, 558, 817, 1244, 1481, 1732
Bsp1720I	GCTNAGC	1 cut(s)	2024
BspACI	CCGC	8 cut(s)	36, 128, 400, 487, 578, 985, 1039, 1574
BspANI	GGCC	4 cut(s)	171, 880, 1382, 1675
BspCNI	CTCAG	9 cut(s)	94, 517, 547, 1781, 1786, 2016, 2107, 2119, 2158
BspDI	ATCGAT	1 cut(s)	2204
BspFNI	CGCG	2 cut(s)	198, 1495
BspHI	TCATGA	1 cut(s)	1198
BspLI	GGNNCC	8 cut(s)	8, 306, 485, 767, 1239, 1927, 2124, 2163
BspPI	GGATC	4 cut(s)	299, 312, 553, 1239
BspT107I	GGYRCC	1 cut(s)	1925
BsrI	ACTGG	8 cut(s)	124, 157, 896, 959, 1010, 1248, 1453, 2046
BssECI	CCNNGG	5 cut(s)	729, 1506, 1619, 1783, 1868
BssMI	GATC	7 cut(s)	298, 304, 558, 817, 1244, 1481, 1732
BssNI	GRCGYC	2 cut(s)	596, 1926
BssSI	CACGAG	1 cut(s)	1104
BssT1I	CCWWGG	4 cut(s)	1506, 1619, 1783, 1868
Bst2BI	CACGAG	1 cut(s)	1104
Bst2UI	CCWGG	1 cut(s)	730
Bst4CI	ACNGT	3 cut(s)	478, 828, 2111
Bst6I	CTCTTC	2 cut(s)	1841, 2051
BstACI	GRCGYC	2 cut(s)	596, 1926
BstAPI	GCANNNNNTGC	2 cut(s)	87, 929
BstBAI	YACGTR	2 cut(s)	845, 1906
BstC8I	GCNNGC	5 cut(s)	850, 1036, 1344, 1947, 2075
BstEII	GGTNACC	1 cut(s)	155
BstF5I	GGATG	5 cut(s)	136, 408, 1270, 1507, 1924
BstFNI	CGCG	2 cut(s)	198, 1495
BstH2I	RGCGCY	2 cut(s)	25, 1929
BstHHI	GCGC	3 cut(s)	24, 1928, 1945
BstKTI	GATC	7 cut(s)	301, 307, 561, 820, 1247, 1484, 1735
BstMAI	GTCTC	2 cut(s)	1326, 1790
BstMBI	GATC	7 cut(s)	298, 304, 558, 817, 1244, 1481, 1732
BstMWI	GCNNNNNNNGC	6 cut(s)	33, 87, 204, 650, 734, 929
BstNI	CCWGG	1 cut(s)	730
BstNSI	RCATGY	2 cut(s)	1949, 1977
BstPI	GGTNACC	1 cut(s)	155
BstSCI	CCNGG	1 cut(s)	728
BstSFI	CTRYAG	1 cut(s)	975
BstUI	CGCG	2 cut(s)	198, 1495
BstV1I	GCAGC	6 cut(s)	11, 409, 781, 932, 1580, 1583
BstV2I	GAAGAC	2 cut(s)	599, 2044
BstX2I	RGATCY	3 cut(s)	304, 558, 1244
BstXI	CCANNNNNNTGG	2 cut(s)	18, 1071
BstYI	RGATCY	3 cut(s)	304, 558, 1244
Bsu15I	ATCGAT	1 cut(s)	2204
BsuI	GTATCC	1 cut(s)	1357
BsuRI	GGCC	4 cut(s)	171, 880, 1382, 1675
BsuTUI	ATCGAT	1 cut(s)	2204
BtgZI	GCGATG	1 cut(s)	1476
BtsCI	GGATG	5 cut(s)	136, 408, 1270, 1507, 1924
BtsI	GCAGTG	1 cut(s)	2068
BtsIMutI	CAGTG	3 cut(s)	117, 903, 2068
Cac8I	GCNNGC	5 cut(s)	850, 1036, 1344, 1947, 2075
CaiI	CAGNNNCTG	2 cut(s)	907, 926
CciI	TCATGA	1 cut(s)	1198
CfoI	GCGC	3 cut(s)	24, 1928, 1945
Cfr13I	GGNCC	2 cut(s)	765, 1237
ClaI	ATCGAT	1 cut(s)	2204
CseI	GACGC	1 cut(s)	604
Csp6I	GTAC	3 cut(s)	1971, 2107, 2112
CviQI	GTAC	3 cut(s)	1971, 2107, 2112
DinI	GGCGCC	1 cut(s)	1927
DpnI	GATC	7 cut(s)	300, 306, 560, 819, 1246, 1483, 1734
DpnII	GATC	7 cut(s)	298, 304, 558, 817, 1244, 1481, 1732
DraIII	CACNNNGTG	1 cut(s)	1906
DriI	GACNNNNNGTC	1 cut(s)	1786
EaeI	YGGCCR	1 cut(s)	1380
Eam1104I	CTCTTC	2 cut(s)	1841, 2051
Eam1105I	GACNNNNNGTC	1 cut(s)	1786
EarI	CTCTTC	2 cut(s)	1841, 2051
EciI	GGCGGA	1 cut(s)	143
Ecl136II	GAGCTC	1 cut(s)	412
Eco130I	CCWWGG	4 cut(s)	1506, 1619, 1783, 1868
Eco147I	AGGCCT	2 cut(s)	171, 880
Eco24I	GRGCYC	3 cut(s)	270, 318, 414
Eco47I	GGWCC	2 cut(s)	765, 1237
Eco53kI	GAGCTC	1 cut(s)	412
Eco72I	CACGTG	1 cut(s)	845
Eco88I	CYCGRG	1 cut(s)	1978
Eco91I	GGTNACC	1 cut(s)	155
EcoICRI	GAGCTC	1 cut(s)	412
EcoO109I	RGGNCCY	1 cut(s)	1237
EcoO65I	GGTNACC	1 cut(s)	155
EcoRI	GAATTC	1 cut(s)	1143
EcoRII	CCWGG	1 cut(s)	728
EcoT14I	CCWWGG	4 cut(s)	1506, 1619, 1783, 1868
EcoT38I	GRGCYC	3 cut(s)	270, 318, 414
EgeI	GGCGCC	1 cut(s)	1927
EheI	GGCGCC	1 cut(s)	1927
ErhI	CCWWGG	4 cut(s)	1506, 1619, 1783, 1868
FalI	AAGNNNNNCTT	2 cut(s)	2029, 2061
FaqI	GGGAC	3 cut(s)	487, 514, 751
FauI	CCCGC	1 cut(s)	992
FauNDI	CATATG	1 cut(s)	163
FbaI	TGATCA	1 cut(s)	1732
Fnu4HI	GCNGC	8 cut(s)	25, 37, 398, 795, 921, 1039, 1569, 1572
FokI	GGATG	5 cut(s)	143, 415, 1277, 1514, 1931
FriOI	GRGCYC	3 cut(s)	270, 318, 414
Fsp4HI	GCNGC	8 cut(s)	25, 37, 398, 795, 921, 1039, 1569, 1572
FspBI	CTAG	4 cut(s)	770, 917, 1479, 1869
FspI	TGCGCA	1 cut(s)	1944
GlaI	GCGC	3 cut(s)	23, 1927, 1944
GluI	GCNGC	8 cut(s)	25, 37, 398, 795, 921, 1039, 1569, 1572
GsaI	CCCAGC	3 cut(s)	474, 501, 936
GsuI	CTGGAG	2 cut(s)	1047, 1436
HaeII	RGCGCY	2 cut(s)	25, 1929
HaeIII	GGCC	4 cut(s)	171, 880, 1382, 1675
HgaI	GACGC	1 cut(s)	604
HhaI	GCGC	3 cut(s)	24, 1928, 1945
Hin1I	GRCGYC	2 cut(s)	596, 1926
Hin6I	GCGC	3 cut(s)	22, 1926, 1943
HinP1I	GCGC	3 cut(s)	22, 1926, 1943
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HindIII	AAGCTT	1 cut(s)	865
HpaI	GTTAAC	1 cut(s)	202
HphI	GGTGA	5 cut(s)	71, 246, 1241, 1742, 1754
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	9 cut(s)	556, 822, 886, 1285, 1315, 1486, 1564, 1716, 1771
Hpy188III	TCNNGA	9 cut(s)	143, 302, 803, 1064, 1199, 1700, 1980, 2126, 2165
Hpy8I	GTNNAC	1 cut(s)	202
Hpy99I	CGWCG	1 cut(s)	198
HpyAV	CCTTC	5 cut(s)	643, 767, 849, 891, 1907
HpyCH4III	ACNGT	3 cut(s)	478, 828, 2111
HpyCH4IV	ACGT	3 cut(s)	42, 844, 1905
HpyF10VI	GCNNNNNNNGC	6 cut(s)	33, 87, 204, 650, 734, 929
HpySE526I	ACGT	3 cut(s)	42, 844, 1905
Hsp92I	GRCGYC	2 cut(s)	596, 1926
HspAI	GCGC	3 cut(s)	22, 1926, 1943
KasI	GGCGCC	1 cut(s)	1925
Ksp22I	TGATCA	1 cut(s)	1732
KspAI	GTTAAC	1 cut(s)	202
Kzo9I	GATC	7 cut(s)	298, 304, 558, 817, 1244, 1481, 1732
LmnI	GCTCC	3 cut(s)	417, 489, 786
Lsp1109I	GCAGC	6 cut(s)	11, 409, 781, 932, 1580, 1583
LweI	GCATC	7 cut(s)	932, 1047, 1258, 1492, 1555, 2131, 2170
MaeI	CTAG	4 cut(s)	770, 917, 1479, 1869
MaeII	ACGT	3 cut(s)	42, 844, 1905
MaeIII	GTNAC	4 cut(s)	155, 185, 430, 445
MalI	GATC	7 cut(s)	300, 306, 560, 819, 1246, 1483, 1734
MboI	GATC	7 cut(s)	298, 304, 558, 817, 1244, 1481, 1732
MflI	RGATCY	3 cut(s)	304, 558, 1244
MhlI	GDGCHC	3 cut(s)	270, 318, 414
MlsI	TGGCCA	1 cut(s)	1382
MluNI	TGGCCA	1 cut(s)	1382
Mly113I	GGCGCC	1 cut(s)	1926
MlyI	GAGTC	2 cut(s)	496, 560
MmeI	TCCRAC	2 cut(s)	1341, 2031
Mox20I	TGGCCA	1 cut(s)	1382
MroXI	GAANNNNTTC	4 cut(s)	891, 1558, 1695, 1850
MscI	TGGCCA	1 cut(s)	1382
MseI	TTAA	7 cut(s)	201, 513, 545, 660, 810, 1520, 1818
MslI	CAYNNNNRTG	3 cut(s)	122, 1740, 2018
Msp20I	TGGCCA	1 cut(s)	1382
MspA1I	CMGCKG	3 cut(s)	400, 1574, 1793
MspR9I	CCNGG	1 cut(s)	730
Mva1269I	GAATGC	1 cut(s)	1640
MvaI	CCWGG	1 cut(s)	730
MvnI	CGCG	2 cut(s)	198, 1495
MwoI	GCNNNNNNNGC	6 cut(s)	33, 87, 204, 650, 734, 929
NarI	GGCGCC	1 cut(s)	1926
NdeI	CATATG	1 cut(s)	163
NdeII	GATC	7 cut(s)	298, 304, 558, 817, 1244, 1481, 1732
NlaIV	GGNNCC	8 cut(s)	8, 306, 485, 767, 1239, 1927, 2124, 2163
NmuCI	GTSAC	2 cut(s)	185, 430
NsbI	TGCGCA	1 cut(s)	1944
NspI	RCATGY	2 cut(s)	1949, 1977
OliI	CACNNNNGTG	1 cut(s)	122
PaeI	GCATGC	1 cut(s)	1949
PaeR7I	CTCGAG	1 cut(s)	1978
PagI	TCATGA	1 cut(s)	1198
PceI	AGGCCT	2 cut(s)	171, 880
PcsI	WCGNNNNNNNCGW	1 cut(s)	190
PctI	GAATGC	1 cut(s)	1640
PdmI	GAANNNNTTC	4 cut(s)	891, 1558, 1695, 1850
PfeI	GAWTC	9 cut(s)	887, 911, 1021, 1202, 1286, 1310, 1559, 2061, 2201
PkrI	GCNGC	8 cut(s)	26, 38, 399, 796, 922, 1040, 1570, 1573
PleI	GAGTC	2 cut(s)	496, 559
PluTI	GGCGCC	1 cut(s)	1929
PmaCI	CACGTG	1 cut(s)	845
PmlI	CACGTG	1 cut(s)	845
PpsI	GAGTC	2 cut(s)	496, 559
Ppu21I	YACGTR	2 cut(s)	845, 1906
PpuMI	RGGWCCY	1 cut(s)	1237
PshBI	ATTAAT	1 cut(s)	1818
PsiI	TTATAA	2 cut(s)	1152, 1401
Psp124BI	GAGCTC	1 cut(s)	414
Psp5II	RGGWCCY	1 cut(s)	1237
Psp6I	CCWGG	1 cut(s)	728
PspCI	CACGTG	1 cut(s)	845
PspEI	GGTNACC	1 cut(s)	155
PspFI	CCCAGC	3 cut(s)	470, 497, 932
PspGI	CCWGG	1 cut(s)	728
PspN4I	GGNNCC	8 cut(s)	8, 306, 485, 767, 1239, 1927, 2124, 2163
PspPI	GGNCC	2 cut(s)	765, 1237
PspPPI	RGGWCCY	1 cut(s)	1237
PstNI	CAGNNNCTG	2 cut(s)	907, 926
PsuI	RGATCY	3 cut(s)	304, 558, 1244
PvuII	CAGCTG	1 cut(s)	1793
RsaI	GTAC	3 cut(s)	1972, 2108, 2113
RsaNI	GTAC	3 cut(s)	1971, 2107, 2112
RseI	CAYNNNNRTG	3 cut(s)	122, 1740, 2018
SacI	GAGCTC	1 cut(s)	414
SaqAI	TTAA	7 cut(s)	201, 513, 545, 660, 810, 1520, 1818
SatI	GCNGC	8 cut(s)	25, 37, 398, 795, 921, 1039, 1569, 1572
Sau3AI	GATC	7 cut(s)	298, 304, 558, 817, 1244, 1481, 1732
Sau96I	GGNCC	2 cut(s)	765, 1237
ScaI	AGTACT	1 cut(s)	2108
SchI	GAGTC	2 cut(s)	496, 560
ScrFI	CCNGG	1 cut(s)	730
SduI	GDGCHC	3 cut(s)	270, 318, 414
SfaNI	GCATC	7 cut(s)	932, 1047, 1258, 1492, 1555, 2131, 2170
SfcI	CTRYAG	1 cut(s)	975
SfoI	GGCGCC	1 cut(s)	1927
Sfr274I	CTCGAG	1 cut(s)	1978
SinI	GGWCC	2 cut(s)	765, 1237
SlaI	CTCGAG	1 cut(s)	1978
SmiMI	CAYNNNNRTG	3 cut(s)	122, 1740, 2018
SmlI	CTYRAG	3 cut(s)	317, 639, 1978
SmoI	CTYRAG	3 cut(s)	317, 639, 1978
SphI	GCATGC	1 cut(s)	1949
SseBI	AGGCCT	2 cut(s)	171, 880
SsiI	CCGC	8 cut(s)	36, 128, 400, 487, 578, 985, 1039, 1574
SspDI	GGCGCC	1 cut(s)	1925
SspI	AATATT	1 cut(s)	1427
SspMI	CTAG	4 cut(s)	770, 917, 1479, 1869
SstI	GAGCTC	1 cut(s)	414
StuI	AGGCCT	2 cut(s)	171, 880
StyD4I	CCNGG	1 cut(s)	728
StyI	CCWWGG	4 cut(s)	1506, 1619, 1783, 1868
TaaI	ACNGT	3 cut(s)	478, 828, 2111
TaiI	ACGT	3 cut(s)	45, 847, 1908
TaqI	TCGA	8 cut(s)	144, 1190, 1701, 1822, 1979, 1995, 2064, 2204
TatI	WGTACW	2 cut(s)	2106, 2111
TauI	GCSGC	2 cut(s)	39, 1041
TfiI	GAWTC	9 cut(s)	887, 911, 1021, 1202, 1286, 1310, 1559, 2061, 2201
Tru1I	TTAA	7 cut(s)	201, 513, 545, 660, 810, 1520, 1818
Tru9I	TTAA	7 cut(s)	201, 513, 545, 660, 810, 1520, 1818
TscAI	CASTG	3 cut(s)	124, 903, 2075
TseFI	GTSAC	2 cut(s)	185, 430
TseI	GCWGC	6 cut(s)	24, 397, 794, 920, 1568, 1571
Tsp45I	GTSAC	2 cut(s)	185, 430
TspDTI	ATGAA	8 cut(s)	100, 1148, 1194, 1419, 1437, 1644, 1824, 1841
TspRI	CASTG	3 cut(s)	124, 903, 2075
VpaK11BI	GGWCC	2 cut(s)	765, 1237
VspI	ATTAAT	1 cut(s)	1818
XapI	RAATTY	3 cut(s)	1143, 1998, 2218
XceI	RCATGY	2 cut(s)	1949, 1977
XhoI	CTCGAG	1 cut(s)	1978
XmaJI	CCTAGG	1 cut(s)	1868
XmnI	GAANNNNTTC	4 cut(s)	891, 1558, 1695, 1850
XspI	CTAG	4 cut(s)	770, 917, 1479, 1869
ZrmI	AGTACT	1 cut(s)	2108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.