TATA box-binding protein-associated factor RNA polymerase I subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G42615 AT2G02955 |
| fragaria_vesca | FvH4_3g26291 |
| malus_domestica | MD04G1025400.v1.1 |
| prunus_persica | Prupe.1G174900_v2.0.a1 Prupe.1G174900_v2.0.a1 |
| pyrus_communis | pycom04g02160 |
| rosa_chinensis | RchiOBHm_Chr5g0048631 RchiOBHm_Chr5g0048641 RchiOBHm_Chr7g0220011 RchiOBHm_Chr7g0220021 |
| rosa_laevigata | RLG00000002264 RLG00000034545 |
| rosa_multiflora | Rmu_sc0005838.1_g000011 Rmu_sc0011175.1_g000001 Rmu_sc0017790.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00033160 Rroxscaffold_3G00239820 |
| rosa_rugosa | Rorug05G0240600 Rorug07G0188400 |
| rosa_samantha | Rh5AG319800 Rh5BG330000 Rh5CG356000 Rh5DG341200 Rh7AG332200 Rh7CG349700 Rh7DG327900 |
| rosa_wichuraiana | Rw5G029910 Rw5G030190 Rw7G027980 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 101 |
| AcsI | RAATTY | 1 cut(s) | 352 |
| AdeI | CACNNNGTG | 1 cut(s) | 82 |
| AfaI | GTAC | 1 cut(s) | 286 |
| AgsI | TTSAA | 2 cut(s) | 351, 358 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 11, 43 |
| AluBI | AGCT | 1 cut(s) | 204 |
| AluI | AGCT | 1 cut(s) | 204 |
| Alw26I | GTCTC | 1 cut(s) | 208 |
| ApoI | RAATTY | 1 cut(s) | 352 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 26 |
| AsuHPI | GGTGA | 1 cut(s) | 61 |
| BanI | GGYRCC | 1 cut(s) | 101 |
| BcoDI | GTCTC | 1 cut(s) | 208 |
| BfaI | CTAG | 1 cut(s) | 156 |
| BmiI | GGNNCC | 2 cut(s) | 103, 297 |
| BmsI | GCATC | 1 cut(s) | 304 |
| Bsa29I | ATCGAT | 1 cut(s) | 338 |
| BsaJI | CCNNGG | 1 cut(s) | 44 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 11, 41 |
| Bse1I | ACTGG | 1 cut(s) | 222 |
| BseCI | ATCGAT | 1 cut(s) | 338 |
| BseDI | CCNNGG | 1 cut(s) | 44 |
| BseGI | GGATG | 1 cut(s) | 100 |
| BseMII | CTCAG | 1 cut(s) | 291 |
| BseNI | ACTGG | 1 cut(s) | 222 |
| BseRI | GAGGAG | 2 cut(s) | 32, 226 |
| BshNI | GGYRCC | 1 cut(s) | 101 |
| BshVI | ATCGAT | 1 cut(s) | 338 |
| BsmAI | GTCTC | 1 cut(s) | 208 |
| BspCNI | CTCAG | 1 cut(s) | 292 |
| BspDI | ATCGAT | 1 cut(s) | 338 |
| BspLI | GGNNCC | 2 cut(s) | 103, 297 |
| BspT107I | GGYRCC | 1 cut(s) | 101 |
| BsrI | ACTGG | 1 cut(s) | 222 |
| BssECI | CCNNGG | 1 cut(s) | 44 |
| Bst6I | CTCTTC | 2 cut(s) | 17, 227 |
| BstC8I | GCNNGC | 1 cut(s) | 151 |
| BstDEI | CTNAG | 1 cut(s) | 300 |
| BstF5I | GGATG | 1 cut(s) | 100 |
| BstMAI | GTCTC | 1 cut(s) | 208 |
| BstNSI | RCATGY | 1 cut(s) | 125 |
| Bsu15I | ATCGAT | 1 cut(s) | 338 |
| BsuTUI | ATCGAT | 1 cut(s) | 338 |
| BtsCI | GGATG | 1 cut(s) | 100 |
| BtsI | GCAGTG | 1 cut(s) | 244 |
| BtsIMutI | CAGTG | 1 cut(s) | 244 |
| Cac8I | GCNNGC | 1 cut(s) | 151 |
| ClaI | ATCGAT | 1 cut(s) | 338 |
| Csp6I | GTAC | 1 cut(s) | 285 |
| CviAII | CATG | 4 cut(s) | 13, 122, 273, 292 |
| CviJI | RGCY | 2 cut(s) | 204, 221 |
| CviKI_1 | RGCY | 2 cut(s) | 204, 221 |
| CviQI | GTAC | 1 cut(s) | 285 |
| DdeI | CTNAG | 1 cut(s) | 300 |
| DraIII | CACNNNGTG | 1 cut(s) | 82 |
| Eam1104I | CTCTTC | 2 cut(s) | 17, 227 |
| EarI | CTCTTC | 2 cut(s) | 17, 227 |
| FaeI | CATG | 4 cut(s) | 16, 125, 276, 295 |
| FatI | CATG | 4 cut(s) | 12, 121, 272, 291 |
| FokI | GGATG | 1 cut(s) | 107 |
| FspBI | CTAG | 1 cut(s) | 156 |
| Hin1II | CATG | 4 cut(s) | 16, 125, 276, 295 |
| HinfI | GANTC | 3 cut(s) | 237, 259, 335 |
| HphI | GGTGA | 1 cut(s) | 61 |
| Hpy166II | GTNNAC | 1 cut(s) | 52 |
| Hpy188III | TCNNGA | 2 cut(s) | 156, 299 |
| Hpy8I | GTNNAC | 1 cut(s) | 52 |
| HpyAV | CCTTC | 1 cut(s) | 92 |
| HpyCH4IV | ACGT | 1 cut(s) | 114 |
| HpyCH4V | TGCA | 2 cut(s) | 187, 317 |
| HpyF3I | CTNAG | 1 cut(s) | 300 |
| HpySE526I | ACGT | 1 cut(s) | 114 |
| Hsp92II | CATG | 4 cut(s) | 16, 125, 276, 295 |
| LpnPI | CCDG | 3 cut(s) | 77, 203, 312 |
| LweI | GCATC | 1 cut(s) | 304 |
| MaeI | CTAG | 1 cut(s) | 156 |
| MaeII | ACGT | 1 cut(s) | 114 |
| MboII | GAAGA | 2 cut(s) | 34, 244 |
| MluCI | AATT | 2 cut(s) | 5, 352 |
| MlyI | GAGTC | 1 cut(s) | 253 |
| MmeI | TCCRAC | 1 cut(s) | 207 |
| MnlI | CCTC | 8 cut(s) | 10, 18, 39, 65, 78, 83, 204, 325 |
| MroXI | GAANNNNTTC | 1 cut(s) | 26 |
| MslI | CAYNNNNRTG | 1 cut(s) | 194 |
| NlaIII | CATG | 4 cut(s) | 16, 125, 276, 295 |
| NlaIV | GGNNCC | 2 cut(s) | 103, 297 |
| NspI | RCATGY | 1 cut(s) | 125 |
| PdmI | GAANNNNTTC | 1 cut(s) | 26 |
| PfeI | GAWTC | 2 cut(s) | 237, 335 |
| PleI | GAGTC | 1 cut(s) | 253 |
| PpsI | GAGTC | 1 cut(s) | 253 |
| PspN4I | GGNNCC | 2 cut(s) | 103, 297 |
| RsaI | GTAC | 1 cut(s) | 286 |
| RsaNI | GTAC | 1 cut(s) | 285 |
| RseI | CAYNNNNRTG | 1 cut(s) | 194 |
| SchI | GAGTC | 1 cut(s) | 253 |
| SetI | ASST | 6 cut(s) | 29, 57, 75, 103, 117, 206 |
| SfaNI | GCATC | 1 cut(s) | 304 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 194 |
| Sse9I | AATT | 2 cut(s) | 5, 352 |
| SspMI | CTAG | 1 cut(s) | 156 |
| TaiI | ACGT | 1 cut(s) | 117 |
| TaqI | TCGA | 3 cut(s) | 171, 240, 338 |
| TasI | AATT | 2 cut(s) | 5, 352 |
| TatI | WGTACW | 1 cut(s) | 284 |
| TfiI | GAWTC | 2 cut(s) | 237, 335 |
| TscAI | CASTG | 1 cut(s) | 251 |
| TspDTI | ATGAA | 2 cut(s) | 17, 111 |
| TspRI | CASTG | 1 cut(s) | 251 |
| XapI | RAATTY | 1 cut(s) | 352 |
| XbaI | TCTAGA | 1 cut(s) | 155 |
| XceI | RCATGY | 1 cut(s) | 125 |
| XmnI | GAANNNNTTC | 1 cut(s) | 26 |
| XspI | CTAG | 1 cut(s) | 156 |