Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005066

Physical Location & Seq

Genomic Coordinates Reverse (-)

41759224 .. 41765185

Gene Structure 5962 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG356000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2193 bp

ATGGGGAACCCAGATACATGGCGTTGCCAGAATTGCGGCAATGTGGGGCTGGAAGATGGCGATGATGGCTTCTTCTATTGCACCCAGTGCAACTCACAAGCCGAGGACTTCATGGACACCGGCGTGGCGGATGAGGACTTCCTCGACCAGACTGGCAACCCATTTGGAGGCCTCTACTCTGCTCGTCACACCCGTCGCATTAACAGCTCTATTGTCAAACCGGAGCCCCTCTCTGAACCCTTAGATGACTTGTCACCTCATTATCAGCTGTTTAGTCAAAGCCAAGCCAAAACAGCAGATCAGGATCCCACAGGGCTCGAGGATTTTTCATTTGATGGGAGAAAGAATGAGGACTATTACGGATGGATTAGGCTTAGGTATGTGATGGGATTGCAACGGATGATTGAGCTCCAATGTGAGGCTTTGGTCTTGGAGTTAAAGGTAAATCCCTTGATATGTGGTTTGGCTGGGACCATTTGGCTCCGCTTCTTGGCTGGGACTCAGGTTTTCAATGATGATTGTGCTGACCAGATCTTTGACTTCAATGAGTCTGAGATCCGCCAACAAGGAGAACCACCTGAAAAATTGAAGATGCCTTCTAGAAGCCATGCACAGCATCATGCAAAGTATGACCCTCAAGCAGTGAAGGCGTGGTTTAGGTCCTTGAAGAAGATTATACCACTATCTTATACTCTAGCTGTTTCTTTTCTGGCTTGTCATCTTGCCAGGGAAGCAGTACTGCCAACTGACATGGTAAAATGGTCCCTAGAAGGAAAGCTCCCATATTTTGCTGCTTTTCTTGAACTTGAAAATGATCTGAAACAGTTTGGACAGCCTTCACGTGCCTGCCCAATAAGTTCAAGCTTGATGTTTAGGCCTTCTGAATCAGTTCCAGTGCAGAAGCTAGAATCACTAGCAGCATCTGTTGCTGGGTCCATAGGCTTGGACTTACCTCCAGTCAATTTCTATGCTATCGCTTCCCGCTTTCTAAATAAGTTATCTCTTCCAGTTGAAAAGATTCTCCCTCATGCGTGCCGCATATATGAGTGGTCAATGCCTCCAGAGTTATGGTTATCTACAAATGAATTGAGGCTTCCAACTCGTGTTTGTGTGATGTCAATACTGATTGTAGCTGTGAGAATTCTTTATAATATTCATGGTTTTGGAGAGTGGGAAAGAAGTTTGTCCAGTCGTCATGCTTCATCTTCCACATCTAACAATTGTGGGGATGATGACCCCAGATCCAGTTGCGAAATGAAGGATGATGCTGATAAGGATTCAGATAATCTGCCTCACAGTAAAGATGATTCGGATACGAACTTTGTTAGAAACTTATCGCGTTCACGTAACTCTAAGTTGGATACTGCAGAACTTTTGGCCAACCTTGAAGCAAGATATAATGAAATTGCTGATGACTATGAATATTGCAAGGACTTGCCAACATATCTCCAGTTCTGCAAGGATACAGTCTTTGCTAGATCAGAACCATCGCGTAAGGATGCCAAGGAAGAAAAGTTAATTGAATCTTTATGGAACTTCTATCAAAGTGGAAAGGATTCTGATACAGCAGTGGAACAAGGATTGCATTGTGGTAGAACTGATGACCAGAAAAGACCAAGGTATAATGAAGAATGCACTAGTAGTAGTCCATCTAGAGAAAAGAAGCTTAGGAGGCCATCCTCCAATGAAGAAACTTCTCTCGCAGATGACCATAAGTGGAGCCAAAATGGTGCTCATTTTGGTGATAGCTCACAGAATAGTCAGAACTCAGAAGTGAATGACCAAGAGTTAGCCGAGACTTTCAAAGATGAAGCCATTAATAGAATGAAATTAGACATGGAGGAGAAGAGGTTCTGTTATATTCCACCGAGGGTGAACCTCAAAAGATTTGACTACCTTCACTATGTGAGGAAGCAGGATGAAGGTGCCTACACTTACGTTGCACATGCTGACTACTACATACTGCTTCGTGCTTGCTCTAGAGTTGCCCAAGTCGAAACTCGGTGTATGCACATTGGGGTGTTGAGCTTTGAGAGGAGACTGGCTTGGTTGGAGAAGAGAATCGACCACTGCTTGCACTTGACCCCTCCTATTGTATCATGTGATTATTGTACTGACATGGTTCCTGAGAACACTACTGATGCAGAAACTATTGTTGAGGAATCGATTGGACTTTCAAATTTGAATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000120 GO:0000976 GO:0001013 GO:0001046 GO:0001047 GO:0001067 GO:0001163 GO:0001164 GO:0001188 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005668 GO:0005730 GO:0006139 GO:0006351 GO:0006352 GO:0006360 GO:0006361 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0016070 GO:0018130 GO:0019438 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0065004 GO:0070013 GO:0070860 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1990837

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RRN7

Protein Analysis

730

Amino Acids

83.22

Weight (kDa)

5.09

Isoelectric Point (pI)

58.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rrn7_cyclin_N	PF20644	131 - 266	7.6e-08	Rrn7/TAF1B, N-terminal cyclin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42615 AT2G02955
fragaria_vesca	FvH4_3g26291
malus_domestica	MD04G1025400.v1.1
prunus_persica	Prupe.1G174900_v2.0.a1 Prupe.1G174900_v2.0.a1
pyrus_communis	pycom04g02160
rosa_chinensis	RchiOBHm_Chr5g0048631 RchiOBHm_Chr5g0048641 RchiOBHm_Chr7g0220011 RchiOBHm_Chr7g0220021
rosa_laevigata	RLG00000002264 RLG00000034545
rosa_multiflora	Rmu_sc0005838.1_g000011 Rmu_sc0011175.1_g000001 Rmu_sc0017790.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033160 Rroxscaffold_3G00239820
rosa_rugosa	Rorug05G0240600 Rorug07G0188400
rosa_samantha	Rh5AG319800 Rh5BG330000 Rh5CG356000 Rh5DG341200 Rh7AG332200 Rh7CG349700 Rh7DG327900
rosa_wichuraiana	Rw5G029910 Rw5G030190 Rw7G027980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1149
AccB1I	GGYRCC	1 cut(s)	1925
AccII	CGCG	2 cut(s)	1339, 1492
AciI	CCGC	6 cut(s)	36, 128, 484, 559, 982, 1036
AclWI	GGATC	4 cut(s)	299, 312, 550, 1236
AcoI	YGGCCR	1 cut(s)	1377
AcsI	RAATTY	2 cut(s)	1140, 2179
AcvI	CACGTG	1 cut(s)	842
AdeI	CACNNNGTG	2 cut(s)	87, 1906
AfaI	GTAC	2 cut(s)	738, 2113
AfiI	CCNNNNNNNGG	3 cut(s)	167, 418, 490
AhlI	ACTAGT	1 cut(s)	1637
AjnI	CCWGG	1 cut(s)	725
AleI	CACNNNNGTG	1 cut(s)	122
AloI	GAACNNNNNNTCC	2 cut(s)	1835, 1867
Alw21I	GWGCWC	2 cut(s)	411, 1735
Alw26I	GTCTC	2 cut(s)	1790, 2032
AlwI	GGATC	4 cut(s)	299, 312, 550, 1236
AlwNI	CAGNNNCTG	1 cut(s)	923
Ama87I	CYCGRG	1 cut(s)	317
AoxI	GGCC	4 cut(s)	169, 875, 1377, 1673
ApeKI	GCWGC	2 cut(s)	791, 917
ApoI	RAATTY	2 cut(s)	1140, 2179
ArsI	GACNNNNNNTTYG	2 cut(s)	518, 550
AseI	ATTAAT	1 cut(s)	1818
Asp700I	GAANNNNTTC	4 cut(s)	888, 1017, 1555, 1850
AspS9I	GGNCC	4 cut(s)	471, 660, 762, 933
AsuHPI	GGTGA	3 cut(s)	246, 1754, 1885
AvaI	CYCGRG	1 cut(s)	317
AvaII	GGWCC	4 cut(s)	471, 660, 762, 933
BaeI	ACNNNNGTAYC	2 cut(s)	1554, 1587
BalI	TGGCCA	1 cut(s)	1379
BamHI	GGATCC	1 cut(s)	304
BanI	GGYRCC	1 cut(s)	1925
BanII	GRGCYC	3 cut(s)	228, 318, 411
BauI	CACGAG	1 cut(s)	1101
BbrPI	CACGTG	1 cut(s)	842
Bbv12I	GWGCWC	2 cut(s)	411, 1735
BbvI	GCAGC	2 cut(s)	778, 929
BccI	CCATC	8 cut(s)	50, 59, 329, 357, 379, 1495, 1657, 1684
BciT130I	CCWGG	1 cut(s)	727
BciVI	GTATCC	3 cut(s)	1306, 1354, 1456
BcoDI	GTCTC	2 cut(s)	1790, 2032
BcuI	ACTAGT	1 cut(s)	1637
BfaI	CTAG	9 cut(s)	600, 695, 767, 905, 914, 1476, 1638, 1653, 1980
BfmI	CTRYAG	1 cut(s)	1365
BfuI	GTATCC	3 cut(s)	1306, 1354, 1456
BglII	AGATCT	1 cut(s)	531
BisI	GCNGC	4 cut(s)	37, 792, 918, 1036
BlsI	GCNGC	4 cut(s)	38, 793, 919, 1037
BmcAI	AGTACT	1 cut(s)	738
Bme1390I	CCNGG	1 cut(s)	727
Bme18I	GGWCC	4 cut(s)	471, 660, 762, 933
BmeT110I	CYCGRG	1 cut(s)	317
BmgT120I	GGNCC	4 cut(s)	471, 660, 762, 933
BmrFI	CCNGG	1 cut(s)	727
BmrI	ACTGGG	1 cut(s)	79
BmsI	GCATC	6 cut(s)	582, 625, 929, 1255, 1489, 2131
BmuI	ACTGGG	1 cut(s)	79
BplI	GAGNNNNNCTC	2 cut(s)	215, 247
BpmI	CTGGAG	3 cut(s)	939, 1044, 1433
Bpu10I	CCTNAGC	2 cut(s)	374, 1667
BpuEI	CTTGAG	1 cut(s)	621
Bsa29I	ATCGAT	1 cut(s)	2165
BsaAI	YACGTR	2 cut(s)	842, 1346
BsaBI	GATNNNNATC	1 cut(s)	303
BsaJI	CCNNGG	5 cut(s)	102, 726, 1503, 1616, 1868
BsaWI	WCCGGW	1 cut(s)	220
BsaXI	ACNNNNNCTCC	2 cut(s)	1835, 1865
Bsc4I	CCNNNNNNNGG	3 cut(s)	167, 418, 490
Bse118I	RCCGGY	1 cut(s)	119
Bse1I	ACTGG	9 cut(s)	85, 157, 893, 956, 1007, 1188, 1245, 1450, 2046
Bse3DI	GCAATG	1 cut(s)	46
Bse8I	GATNNNNATC	1 cut(s)	303
BseBI	CCWGG	1 cut(s)	727
BseCI	ATCGAT	1 cut(s)	2165
BseDI	CCNNGG	5 cut(s)	102, 726, 1503, 1616, 1868
BseGI	GGATG	8 cut(s)	136, 368, 405, 1234, 1267, 1504, 1676, 1924
BseJI	GATNNNNATC	1 cut(s)	303
BseLI	CCNNNNNNNGG	3 cut(s)	167, 418, 490
BseMI	GCAATG	1 cut(s)	46
BseMII	CTCAG	4 cut(s)	515, 543, 1782, 2118
BseNI	ACTGG	9 cut(s)	85, 157, 893, 956, 1007, 1188, 1245, 1450, 2046
BseRI	GAGGAG	2 cut(s)	1856, 2050
BseXI	GCAGC	2 cut(s)	778, 929
BseYI	CCCAGC	3 cut(s)	467, 494, 929
BsgI	GTGCAG	1 cut(s)	917
Bsh1236I	CGCG	2 cut(s)	1339, 1492
BshFI	GGCC	4 cut(s)	171, 877, 1379, 1675
BshNI	GGYRCC	1 cut(s)	1925
BshVI	ATCGAT	1 cut(s)	2165
BsiHKAI	GWGCWC	2 cut(s)	411, 1735
BsiHKCI	CYCGRG	1 cut(s)	317
BsiSI	CCGG	2 cut(s)	120, 221
BslFI	GGGAC	3 cut(s)	484, 511, 748
BslI	CCNNNNNNNGG	3 cut(s)	167, 418, 490
BsmAI	GTCTC	2 cut(s)	1790, 2032
BsmFI	GGGAC	3 cut(s)	484, 511, 748
BsmI	GAATGC	1 cut(s)	1637
BsnI	GGCC	4 cut(s)	171, 877, 1379, 1675
BsoBI	CYCGRG	1 cut(s)	317
Bsp1286I	GDGCHC	4 cut(s)	228, 318, 411, 1735
Bsp143I	GATC	7 cut(s)	298, 304, 531, 555, 814, 1241, 1478
BspACI	CCGC	6 cut(s)	36, 128, 484, 559, 982, 1036
BspANI	GGCC	4 cut(s)	171, 877, 1379, 1675
BspCNI	CTCAG	4 cut(s)	514, 544, 1781, 2119
BspDI	ATCGAT	1 cut(s)	2165
BspFNI	CGCG	2 cut(s)	1339, 1492
BspMAI	CTGCAG	1 cut(s)	1369
BspPI	GGATC	4 cut(s)	299, 312, 550, 1236
BspT107I	GGYRCC	1 cut(s)	1925
BsrDI	GCAATG	1 cut(s)	46
BsrFI	RCCGGY	1 cut(s)	119
BsrI	ACTGG	9 cut(s)	85, 157, 893, 956, 1007, 1188, 1245, 1450, 2046
BssAI	RCCGGY	1 cut(s)	119
BssECI	CCNNGG	5 cut(s)	102, 726, 1503, 1616, 1868
BssMI	GATC	7 cut(s)	298, 304, 531, 555, 814, 1241, 1478
BssSI	CACGAG	1 cut(s)	1101
BssT1I	CCWWGG	2 cut(s)	1503, 1616
Bst2BI	CACGAG	1 cut(s)	1101
Bst2UI	CCWGG	1 cut(s)	727
Bst4CI	ACNGT	3 cut(s)	825, 1298, 1468
Bst6I	CTCTTC	3 cut(s)	1008, 1841, 2051
BstAPI	GCANNNNNTGC	2 cut(s)	87, 926
BstBAI	YACGTR	2 cut(s)	842, 1346
BstC8I	GCNNGC	4 cut(s)	847, 1033, 1975, 2075
BstDEI	CTNAG	8 cut(s)	241, 374, 501, 552, 1353, 1667, 1768, 2127
BstF5I	GGATG	8 cut(s)	136, 368, 405, 1234, 1267, 1504, 1676, 1924
BstFNI	CGCG	2 cut(s)	1339, 1492
BstKTI	GATC	7 cut(s)	301, 307, 534, 558, 817, 1244, 1481
BstMAI	GTCTC	2 cut(s)	1790, 2032
BstMBI	GATC	7 cut(s)	298, 304, 531, 555, 814, 1241, 1478
BstMWI	GCNNNNNNNGC	9 cut(s)	33, 66, 87, 204, 293, 647, 731, 926, 1672
BstNI	CCWGG	1 cut(s)	727
BstNSI	RCATGY	1 cut(s)	1949
BstSCI	CCNGG	1 cut(s)	725
BstSFI	CTRYAG	1 cut(s)	1365
BstUI	CGCG	2 cut(s)	1339, 1492
BstV1I	GCAGC	2 cut(s)	778, 929
BstX2I	RGATCY	4 cut(s)	304, 531, 555, 1241
BstXI	CCANNNNNNTGG	3 cut(s)	18, 943, 1068
BstYI	RGATCY	4 cut(s)	304, 531, 555, 1241
Bsu15I	ATCGAT	1 cut(s)	2165
BsuI	GTATCC	3 cut(s)	1306, 1354, 1456
BsuRI	GGCC	4 cut(s)	171, 877, 1379, 1675
BsuTUI	ATCGAT	1 cut(s)	2165
BtgZI	GCGATG	2 cut(s)	75, 1473
BtsCI	GGATG	8 cut(s)	136, 368, 405, 1234, 1267, 1504, 1676, 1924
BtsI	GCAGTG	3 cut(s)	648, 1575, 2068
BtsIMutI	CAGTG	5 cut(s)	92, 648, 900, 1575, 2068
Cac8I	GCNNGC	4 cut(s)	847, 1033, 1975, 2075
CaiI	CAGNNNCTG	1 cut(s)	923
Cfr10I	RCCGGY	1 cut(s)	119
Cfr13I	GGNCC	4 cut(s)	471, 660, 762, 933
ClaI	ATCGAT	1 cut(s)	2165
Csp6I	GTAC	2 cut(s)	737, 2112
CviQI	GTAC	2 cut(s)	737, 2112
DdeI	CTNAG	8 cut(s)	241, 374, 501, 552, 1353, 1667, 1768, 2127
DpnI	GATC	7 cut(s)	300, 306, 533, 557, 816, 1243, 1480
DpnII	GATC	7 cut(s)	298, 304, 531, 555, 814, 1241, 1478
DraIII	CACNNNGTG	2 cut(s)	87, 1906
EaeI	YGGCCR	1 cut(s)	1377
Eam1104I	CTCTTC	3 cut(s)	1008, 1841, 2051
EarI	CTCTTC	3 cut(s)	1008, 1841, 2051
EciI	GGCGGA	2 cut(s)	143, 548
Ecl136II	GAGCTC	1 cut(s)	409
Eco130I	CCWWGG	2 cut(s)	1503, 1616
Eco147I	AGGCCT	2 cut(s)	171, 877
Eco24I	GRGCYC	3 cut(s)	228, 318, 411
Eco47I	GGWCC	4 cut(s)	471, 660, 762, 933
Eco53kI	GAGCTC	1 cut(s)	409
Eco72I	CACGTG	1 cut(s)	842
Eco88I	CYCGRG	1 cut(s)	317
EcoICRI	GAGCTC	1 cut(s)	409
EcoO109I	RGGNCCY	1 cut(s)	660
EcoRI	GAATTC	1 cut(s)	1140
EcoRII	CCWGG	1 cut(s)	725
EcoT14I	CCWWGG	2 cut(s)	1503, 1616
EcoT38I	GRGCYC	3 cut(s)	228, 318, 411
ErhI	CCWWGG	2 cut(s)	1503, 1616
FaqI	GGGAC	3 cut(s)	484, 511, 748
FauI	CCCGC	1 cut(s)	989
Fnu4HI	GCNGC	4 cut(s)	37, 792, 918, 1036
FokI	GGATG	8 cut(s)	143, 375, 412, 1241, 1274, 1511, 1663, 1931
FriOI	GRGCYC	3 cut(s)	228, 318, 411
Fsp4HI	GCNGC	4 cut(s)	37, 792, 918, 1036
FspBI	CTAG	9 cut(s)	600, 695, 767, 905, 914, 1476, 1638, 1653, 1980
GluI	GCNGC	4 cut(s)	37, 792, 918, 1036
GsaI	CCCAGC	3 cut(s)	471, 498, 933
GsuI	CTGGAG	3 cut(s)	939, 1044, 1433
HaeIII	GGCC	4 cut(s)	171, 877, 1379, 1675
HapII	CCGG	2 cut(s)	120, 221
HindIII	AAGCTT	2 cut(s)	862, 1664
HpaII	CCGG	2 cut(s)	120, 221
HphI	GGTGA	3 cut(s)	246, 1754, 1885
Hpy166II	GTNNAC	2 cut(s)	1343, 1876
Hpy188III	TCNNGA	7 cut(s)	302, 600, 800, 1061, 1653, 1980, 2126
Hpy8I	GTNNAC	2 cut(s)	1343, 1876
Hpy99I	CGWCG	1 cut(s)	198
HpyAV	CCTTC	8 cut(s)	606, 640, 764, 846, 888, 1252, 1907, 1916
HpyCH4III	ACNGT	3 cut(s)	825, 1298, 1468
HpyCH4IV	ACGT	3 cut(s)	841, 1345, 1938
HpyF10VI	GCNNNNNNNGC	9 cut(s)	33, 66, 87, 204, 293, 647, 731, 926, 1672
HpyF3I	CTNAG	8 cut(s)	241, 374, 501, 552, 1353, 1667, 1768, 2127
HpySE526I	ACGT	3 cut(s)	841, 1345, 1938
Kzo9I	GATC	7 cut(s)	298, 304, 531, 555, 814, 1241, 1478
LmnI	GCTCC	5 cut(s)	223, 414, 486, 783, 1719
Lsp1109I	GCAGC	2 cut(s)	778, 929
LweI	GCATC	6 cut(s)	582, 625, 929, 1255, 1489, 2131
MaeI	CTAG	9 cut(s)	600, 695, 767, 905, 914, 1476, 1638, 1653, 1980
MaeII	ACGT	3 cut(s)	841, 1345, 1938
MaeIII	GTNAC	3 cut(s)	185, 252, 1346
MalI	GATC	7 cut(s)	300, 306, 533, 557, 816, 1243, 1480
MboI	GATC	7 cut(s)	298, 304, 531, 555, 814, 1241, 1478
MfeI	CAATTG	1 cut(s)	1219
MflI	RGATCY	4 cut(s)	304, 531, 555, 1241
MhlI	GDGCHC	4 cut(s)	228, 318, 411, 1735
MlsI	TGGCCA	1 cut(s)	1379
MluNI	TGGCCA	1 cut(s)	1379
MlyI	GAGTC	2 cut(s)	493, 557
MmeI	TCCRAC	3 cut(s)	1121, 1338, 2031
Mox20I	TGGCCA	1 cut(s)	1379
MroXI	GAANNNNTTC	4 cut(s)	888, 1017, 1555, 1850
MscI	TGGCCA	1 cut(s)	1379
MseI	TTAA	4 cut(s)	201, 437, 1517, 1818
MslI	CAYNNNNRTG	3 cut(s)	122, 1740, 2018
Msp20I	TGGCCA	1 cut(s)	1379
MspA1I	CMGCKG	1 cut(s)	268
MspI	CCGG	2 cut(s)	120, 221
MspR9I	CCNGG	1 cut(s)	727
MunI	CAATTG	1 cut(s)	1219
Mva1269I	GAATGC	1 cut(s)	1637
MvaI	CCWGG	1 cut(s)	727
MvnI	CGCG	2 cut(s)	1339, 1492
MwoI	GCNNNNNNNGC	9 cut(s)	33, 66, 87, 204, 293, 647, 731, 926, 1672
NdeII	GATC	7 cut(s)	298, 304, 531, 555, 814, 1241, 1478
NmeAIII	GCCGAG	2 cut(s)	127, 1819
NmuCI	GTSAC	2 cut(s)	185, 252
NspI	RCATGY	1 cut(s)	1949
OliI	CACNNNNGTG	1 cut(s)	122
PaeR7I	CTCGAG	1 cut(s)	317
PceI	AGGCCT	2 cut(s)	171, 877
PcsI	WCGNNNNNNNCGW	1 cut(s)	190
PctI	GAATGC	1 cut(s)	1637
PdmI	GAANNNNTTC	4 cut(s)	888, 1017, 1555, 1850
PfeI	GAWTC	9 cut(s)	884, 908, 1018, 1277, 1307, 1523, 1556, 2061, 2162
PkrI	GCNGC	4 cut(s)	38, 793, 919, 1037
PleI	GAGTC	2 cut(s)	493, 556
PmaCI	CACGTG	1 cut(s)	842
PmlI	CACGTG	1 cut(s)	842
PpsI	GAGTC	2 cut(s)	493, 556
Ppu21I	YACGTR	2 cut(s)	842, 1346
PpuMI	RGGWCCY	1 cut(s)	660
PshBI	ATTAAT	1 cut(s)	1818
PsiI	TTATAA	1 cut(s)	1149
Psp124BI	GAGCTC	1 cut(s)	411
Psp5II	RGGWCCY	1 cut(s)	660
Psp6I	CCWGG	1 cut(s)	725
PspCI	CACGTG	1 cut(s)	842
PspFI	CCCAGC	3 cut(s)	467, 494, 929
PspGI	CCWGG	1 cut(s)	725
PspPI	GGNCC	4 cut(s)	471, 660, 762, 933
PspPPI	RGGWCCY	1 cut(s)	660
PspXI	VCTCGAGB	1 cut(s)	317
PstI	CTGCAG	1 cut(s)	1369
PstNI	CAGNNNCTG	1 cut(s)	923
PsuI	RGATCY	4 cut(s)	304, 531, 555, 1241
PvuII	CAGCTG	1 cut(s)	268
RsaI	GTAC	2 cut(s)	738, 2113
RsaNI	GTAC	2 cut(s)	737, 2112
RseI	CAYNNNNRTG	3 cut(s)	122, 1740, 2018
SacI	GAGCTC	1 cut(s)	411
SaqAI	TTAA	4 cut(s)	201, 437, 1517, 1818
SatI	GCNGC	4 cut(s)	37, 792, 918, 1036
Sau3AI	GATC	7 cut(s)	298, 304, 531, 555, 814, 1241, 1478
Sau96I	GGNCC	4 cut(s)	471, 660, 762, 933
ScaI	AGTACT	1 cut(s)	738
SchI	GAGTC	2 cut(s)	493, 557
ScrFI	CCNGG	1 cut(s)	727
SduI	GDGCHC	4 cut(s)	228, 318, 411, 1735
SfaNI	GCATC	6 cut(s)	582, 625, 929, 1255, 1489, 2131
SfcI	CTRYAG	1 cut(s)	1365
Sfr274I	CTCGAG	1 cut(s)	317
SgrAI	CRCCGGYG	1 cut(s)	119
SinI	GGWCC	4 cut(s)	471, 660, 762, 933
SlaI	CTCGAG	1 cut(s)	317
SmiMI	CAYNNNNRTG	3 cut(s)	122, 1740, 2018
SmlI	CTYRAG	2 cut(s)	317, 636
SmoI	CTYRAG	2 cut(s)	317, 636
SpeI	ACTAGT	1 cut(s)	1637
SseBI	AGGCCT	2 cut(s)	171, 877
SsiI	CCGC	6 cut(s)	36, 128, 484, 559, 982, 1036
SspI	AATATT	2 cut(s)	1153, 1424
SspMI	CTAG	9 cut(s)	600, 695, 767, 905, 914, 1476, 1638, 1653, 1980
SstI	GAGCTC	1 cut(s)	411
StuI	AGGCCT	2 cut(s)	171, 877
StyD4I	CCNGG	1 cut(s)	725
StyI	CCWWGG	2 cut(s)	1503, 1616
TaaI	ACNGT	3 cut(s)	825, 1298, 1468
TaiI	ACGT	3 cut(s)	844, 1348, 1941
TaqI	TCGA	5 cut(s)	144, 318, 1995, 2064, 2165
TatI	WGTACW	2 cut(s)	736, 2111
TauI	GCSGC	2 cut(s)	39, 1038
TfiI	GAWTC	9 cut(s)	884, 908, 1018, 1277, 1307, 1523, 1556, 2061, 2162
Tru1I	TTAA	4 cut(s)	201, 437, 1517, 1818
Tru9I	TTAA	4 cut(s)	201, 437, 1517, 1818
TscAI	CASTG	5 cut(s)	92, 648, 900, 1575, 2075
TseFI	GTSAC	2 cut(s)	185, 252
TseI	GCWGC	2 cut(s)	791, 917
Tsp45I	GTSAC	2 cut(s)	185, 252
TspGWI	ACGGA	2 cut(s)	375, 412
TspRI	CASTG	5 cut(s)	92, 648, 900, 1575, 2075
VpaK11BI	GGWCC	4 cut(s)	471, 660, 762, 933
VspI	ATTAAT	1 cut(s)	1818
XapI	RAATTY	2 cut(s)	1140, 2179
XbaI	TCTAGA	3 cut(s)	599, 1652, 1979
XceI	RCATGY	1 cut(s)	1949
XhoI	CTCGAG	1 cut(s)	317
XmnI	GAANNNNTTC	4 cut(s)	888, 1017, 1555, 1850
XspI	CTAG	9 cut(s)	600, 695, 767, 905, 914, 1476, 1638, 1653, 1980
ZrmI	AGTACT	1 cut(s)	738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.