AT1G43245

SET domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006147
Physical Location & Seq
Reverse (-)
16308510 .. 16311094
2585 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G43245.2

Sequence Viewer

Length: 1677 bp
ATGGAGATACGCGCGGCGGAGGATATCGAAATCCGCACAGATCTATTTCCGCCACTCTCTCCACTCGCTTCCTCTCTCTACGACTCATTCCTCTCCTCTCACTGCTCCTCCTGCTTCTCCCTTCTCCCCCCATCTCCGCCGCAACCTCTCTACTGCTCCGCCGCATGCTCCCTCACCGATTCATTCACCAATTCCCCTCAATTCCCACCGGAGATAACACCAATCCTCCCCTCCGACATCCGTACATCTCTCCATCTCCTCAATTCCACCGCCGTCGACACTTCCTCATCTCCCCACCGTCTTAACAACCTTCTCACTAATCACCACCTCCTCATGGCTGATCCTTCCATCTCCGTCGCTATTCACCACGCCGCCAACTTCATAGCCACCGTTATTAGATCAAACCGGAAAAACACAGAGTTGGAAGAAGCAGCTATATGTGCTGTGCTAACAAACGCCGTTGAGGTGCACGATAGCAACGGACTAGCTCTTGGAATCGCTCTCTATAATTCAAGCTTCTCTTGGATTAACCATAGCTGCTCTCCAAACTCTTGTTACCGTTTCGTCAACAACAGGACGTCGTATCATGATGTTCATGTCACCAACACAGAAACATCGTCAAACTTAGAATTGCAGGAACAAGTTTGTGGTACTAGTTTGAACAGTGGTAATGGAAATGGACCAAAGTTGATTGTTAGAAGTATCAAGAGGATTAAGAGTGGTGAAGAGATCACTGTATCTTATATTGACTTACTTCAACCCACGGGATTGAGACAGTCAGATTTGTGGTCGAAATATCGATTTATGTGTAACTGTGGACGATGTGCAGCTTCACCTCCAGCTTATGTGGACTCTATTTTAGAGGGAGTTCTTACGTTGGAGAGTGAAAAGACAACCGTTGGTCACTTTGATGGAAGTACTAACAAAGATGAAGCAGTGGGAAAGATGAATGATTATATCCAAGAAGCTATAGATGATTTTTTATCGGACAATATCGATCCTAAAACATGTTGTGAGATGATTGAGAGTGTTCTGCATCACGGCATCCAGTTCAAGGAAGACTCACAGCCTCATTGTCTGCGGTTACATGCGTGTCACTACGTTGCTCTGAATGCGTACATTACTCTAGCTACTGCTTACAGAATCCGTTCGATTGATTCTGAAACTGGCATTGTTTGTGACATGAGCAGGATAAGTGCAGCCTACTCTTTATTCCTTGCTGGTGTTTCTCACCATCTCTTTTGTGCGGAACGTTCTTTTGCTATATCTGCAGCAAAATTCTGGAAAAATGCTGGAGAATTATTGTTTGATTTGGCCCCGAAGCTTTTGATGGAATTATCTGTAGAATCTGATGTCAAATGCACGAAATGTCTTATGCTTGAAACCTCTAATTCACACAGAGATATCAAAGAAAAGTCTAGGCAGATTCTGAGTTGTGTCAGAGACATCTCACAAGTCACATGGAGTTTCCTCACTCGCGGTTGCCCTTACCTGGAAAAGTTTAGGAGTCCAGTTGATTTCAGCTTGACTAGGACCAATGGCGAGAGAGAAGAATCGAGTAAGGATCAAACGGTAAACGTACTTTTACTCTCTTCTCACTGCTTACTATACGCAGACCTTCTGACTGATTTATGTTACGGTCAGAAATCACATTTGGTGTCTCGATTCCGATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SET

Protein Analysis

558

Amino Acids

61.93

Weight (kDa)

5.8

Isoelectric Point (pI)

48.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 162 - 248 5.8e-07 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 581
AccI GTMKAC 1 cut(s) 276
AccII CGCG 3 cut(s) 12, 14, 1479
AclI AACGTT 1 cut(s) 1252
AclWI GGATC 3 cut(s) 335, 992, 1572
AcsI RAATTY 1 cut(s) 1277
AcyI GRCGYC 1 cut(s) 578
AfaI GTAC 5 cut(s) 244, 652, 919, 1118, 1581
AfiI CCNNNNNNNGG 3 cut(s) 334, 1054, 1492
AflIII ACRYGT 1 cut(s) 1007
AgsI TTSAA 5 cut(s) 513, 661, 758, 1054, 1382
AhlI ACTAGT 1 cut(s) 653
AjnI CCWGG 1 cut(s) 1491
AjuI GAANNNNNNNTTGG 2 cut(s) 1637, 1669
Alw21I GWGCWC 1 cut(s) 471
Alw26I GTCTC 3 cut(s) 766, 1437, 1665
Alw44I GTGCAC 1 cut(s) 467
AlwI GGATC 3 cut(s) 335, 992, 1572
AlwNI CAGNNNCTG 1 cut(s) 1429
AoxI GGCC 1 cut(s) 1314
ApaLI GTGCAC 1 cut(s) 467
ApeKI GCWGC 5 cut(s) 431, 537, 827, 1199, 1271
ApoI RAATTY 1 cut(s) 1277
Asp700I GAANNNNTTC 1 cut(s) 1147
AspLEI GCGC 1 cut(s) 14
AspS9I GGNCC 3 cut(s) 680, 1315, 1533
AsuHPI GGTGA 8 cut(s) 166, 178, 314, 356, 592, 734, 825, 1223
AvaII GGWCC 2 cut(s) 680, 1533
BaeGI GKGCMC 1 cut(s) 471
BbsI GAAGAC 1 cut(s) 1065
Bbv12I GWGCWC 1 cut(s) 471
BbvI GCAGC 5 cut(s) 443, 524, 839, 1211, 1283
BccI CCATC 6 cut(s) 139, 261, 356, 905, 1242, 1324
BceAI ACGGC 3 cut(s) 257, 443, 1057
BciT130I CCWGG 1 cut(s) 1493
BcoDI GTCTC 3 cut(s) 766, 1437, 1665
BcuI ACTAGT 1 cut(s) 653
BfaI CTAG 5 cut(s) 485, 654, 1127, 1419, 1530
BfmI CTRYAG 3 cut(s) 969, 1269, 1341
BglII AGATCT 1 cut(s) 40
BisI GCNGC 9 cut(s) 15, 140, 162, 372, 432, 538, 828, 1200, 1272
BlsI GCNGC 9 cut(s) 16, 141, 163, 373, 433, 539, 829, 1201, 1273
BmcAI AGTACT 1 cut(s) 919
Bme1390I CCNGG 1 cut(s) 1493
Bme18I GGWCC 2 cut(s) 680, 1533
BmgT120I GGNCC 3 cut(s) 680, 1315, 1533
BmiI GGNNCC 1 cut(s) 1317
BmrFI CCNGG 1 cut(s) 1493
BmsI GCATC 2 cut(s) 1045, 1053
BpiI GAAGAC 1 cut(s) 1065
BpmI CTGGAG 2 cut(s) 822, 1314
Bsa29I ATCGAT 2 cut(s) 799, 996
BsaHI GRCGYC 1 cut(s) 578
BsaJI CCNNGG 1 cut(s) 762
BsaWI WCCGGW 2 cut(s) 208, 405
BsaXI ACNNNNNCTCC 4 cut(s) 92, 122, 210, 240
Bsc4I CCNNNNNNNGG 3 cut(s) 334, 1054, 1492
Bse1I ACTGG 3 cut(s) 1048, 1171, 1511
BseBI CCWGG 1 cut(s) 1493
BseCI ATCGAT 2 cut(s) 799, 996
BseDI CCNNGG 1 cut(s) 762
BseGI GGATG 2 cut(s) 237, 1044
BseLI CCNNNNNNNGG 3 cut(s) 334, 1054, 1492
BseMII CTCAG 1 cut(s) 1421
BseNI ACTGG 3 cut(s) 1048, 1171, 1511
BseRI GAGGAG 4 cut(s) 85, 97, 248, 320
BseSI GKGCMC 1 cut(s) 471
BseXI GCAGC 5 cut(s) 443, 524, 839, 1211, 1283
BsgI GTGCAG 2 cut(s) 846, 1218
Bsh1236I CGCG 3 cut(s) 12, 14, 1479
BshFI GGCC 1 cut(s) 1316
BshVI ATCGAT 2 cut(s) 799, 996
BsiHKAI GWGCWC 1 cut(s) 471
BsiSI CCGG 2 cut(s) 209, 406
BslI CCNNNNNNNGG 3 cut(s) 334, 1054, 1492
BsmAI GTCTC 3 cut(s) 766, 1437, 1665
BsmI GAATGC 1 cut(s) 1117
BsnI GGCC 1 cut(s) 1316
Bsp1286I GDGCHC 1 cut(s) 471
Bsp143I GATC 6 cut(s) 40, 340, 398, 729, 997, 1564
BspANI GGCC 1 cut(s) 1316
BspCNI CTCAG 1 cut(s) 1422
BspDI ATCGAT 2 cut(s) 799, 996
BspFNI CGCG 3 cut(s) 12, 14, 1479
BspHI TCATGA 1 cut(s) 586
BspLI GGNNCC 1 cut(s) 1317
BspMAI CTGCAG 1 cut(s) 1273
BspPI GGATC 3 cut(s) 335, 992, 1572
BsrI ACTGG 3 cut(s) 1048, 1171, 1511
BssECI CCNNGG 1 cut(s) 762
BssMI GATC 6 cut(s) 40, 340, 398, 729, 997, 1564
BssNI GRCGYC 1 cut(s) 578
Bst2UI CCWGG 1 cut(s) 1493
Bst6I CTCTTC 2 cut(s) 720, 1597
BstACI GRCGYC 1 cut(s) 578
BstC8I GCNNGC 1 cut(s) 166
BstDEI CTNAG 2 cut(s) 625, 1430
BstDSI CCRYGG 1 cut(s) 762
BstF5I GGATG 2 cut(s) 237, 1044
BstFNI CGCG 3 cut(s) 12, 14, 1479
BstHHI GCGC 1 cut(s) 14
BstKTI GATC 6 cut(s) 43, 343, 401, 732, 1000, 1567
BstMAI GTCTC 3 cut(s) 766, 1437, 1665
BstMBI GATC 6 cut(s) 40, 340, 398, 729, 997, 1564
BstMWI GCNNNNNNNGC 4 cut(s) 111, 440, 1112, 1268
BstNI CCWGG 1 cut(s) 1493
BstNSI RCATGY 3 cut(s) 168, 1011, 1091
BstSCI CCNGG 1 cut(s) 1491
BstSFI CTRYAG 3 cut(s) 969, 1269, 1341
BstSLI GKGCMC 1 cut(s) 471
BstUI CGCG 3 cut(s) 12, 14, 1479
BstV1I GCAGC 5 cut(s) 443, 524, 839, 1211, 1283
BstV2I GAAGAC 1 cut(s) 1065
BstX2I RGATCY 1 cut(s) 40
BstYI RGATCY 1 cut(s) 40
Bsu15I ATCGAT 2 cut(s) 799, 996
BsuRI GGCC 1 cut(s) 1316
BsuTUI ATCGAT 2 cut(s) 799, 996
BtgI CCRYGG 1 cut(s) 762
BtsCI GGATG 2 cut(s) 237, 1044
BtsI GCAGTG 3 cut(s) 100, 942, 1597
BtsIMutI CAGTG 5 cut(s) 100, 670, 732, 942, 1597
Cac8I GCNNGC 1 cut(s) 166
CaiI CAGNNNCTG 1 cut(s) 1429
CciI TCATGA 1 cut(s) 586
CfoI GCGC 1 cut(s) 14
Cfr13I GGNCC 3 cut(s) 680, 1315, 1533
ClaI ATCGAT 2 cut(s) 799, 996
Csp6I GTAC 5 cut(s) 243, 651, 918, 1117, 1580
CviAII CATG 8 cut(s) 165, 334, 587, 596, 1008, 1088, 1183, 1461
CviQI GTAC 5 cut(s) 243, 651, 918, 1117, 1580
DdeI CTNAG 2 cut(s) 625, 1430
DpnI GATC 6 cut(s) 42, 342, 400, 731, 999, 1566
DpnII GATC 6 cut(s) 40, 340, 398, 729, 997, 1564
Eam1104I CTCTTC 2 cut(s) 720, 1597
EarI CTCTTC 2 cut(s) 720, 1597
EciI GGCGGA 4 cut(s) 32, 39, 126, 148
Eco32I GATATC 2 cut(s) 25, 1405
Eco47I GGWCC 2 cut(s) 680, 1533
EcoRII CCWGG 1 cut(s) 1491
EcoRV GATATC 2 cut(s) 25, 1405
FaeI CATG 8 cut(s) 168, 337, 590, 599, 1011, 1091, 1186, 1464
FalI AAGNNNNNCTT 2 cut(s) 505, 537
FatI CATG 8 cut(s) 164, 333, 586, 595, 1007, 1087, 1182, 1460
FblI GTMKAC 1 cut(s) 276
Fnu4HI GCNGC 9 cut(s) 15, 140, 162, 372, 432, 538, 828, 1200, 1272
FokI GGATG 2 cut(s) 224, 1031
Fsp4HI GCNGC 9 cut(s) 15, 140, 162, 372, 432, 538, 828, 1200, 1272
FspBI CTAG 5 cut(s) 485, 654, 1127, 1419, 1530
GlaI GCGC 1 cut(s) 13
GluI GCNGC 9 cut(s) 15, 140, 162, 372, 432, 538, 828, 1200, 1272
GsuI CTGGAG 2 cut(s) 822, 1314
HaeIII GGCC 1 cut(s) 1316
HapII CCGG 2 cut(s) 209, 406
HhaI GCGC 1 cut(s) 14
Hin1I GRCGYC 1 cut(s) 578
Hin1II CATG 8 cut(s) 168, 337, 590, 599, 1011, 1091, 1186, 1464
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HincII GTYRAC 2 cut(s) 277, 568
HindII GTYRAC 2 cut(s) 277, 568
HindIII AAGCTT 2 cut(s) 514, 1322
HpaII CCGG 2 cut(s) 209, 406
HphI GGTGA 8 cut(s) 166, 178, 314, 356, 592, 734, 825, 1223
Hpy166II GTNNAC 6 cut(s) 277, 469, 568, 818, 850, 1576
Hpy188III TCNNGA 4 cut(s) 587, 706, 1282, 1662
Hpy8I GTNNAC 6 cut(s) 277, 469, 568, 818, 850, 1576
Hpy99I CGWCG 3 cut(s) 278, 359, 583
HpyAV CCTTC 4 cut(s) 131, 320, 354, 1628
HpyCH4IV ACGT 5 cut(s) 578, 875, 1101, 1252, 1578
HpyCH4V TGCA 7 cut(s) 469, 634, 827, 1036, 1199, 1271, 1362
HpyF10VI GCNNNNNNNGC 4 cut(s) 111, 440, 1112, 1268
HpyF3I CTNAG 2 cut(s) 625, 1430
HpySE526I ACGT 5 cut(s) 578, 875, 1101, 1252, 1578
Hsp92I GRCGYC 1 cut(s) 578
Hsp92II CATG 8 cut(s) 168, 337, 590, 599, 1011, 1091, 1186, 1464
HspAI GCGC 1 cut(s) 12
Kzo9I GATC 6 cut(s) 40, 340, 398, 729, 997, 1564
LmnI GCTCC 3 cut(s) 110, 161, 173
Lsp1109I GCAGC 5 cut(s) 443, 524, 839, 1211, 1283
LweI GCATC 2 cut(s) 1045, 1053
MaeI CTAG 5 cut(s) 485, 654, 1127, 1419, 1530
MaeII ACGT 5 cut(s) 578, 875, 1101, 1252, 1578
MaeIII GTNAC 9 cut(s) 554, 598, 809, 902, 1083, 1094, 1178, 1456, 1634
MalI GATC 6 cut(s) 42, 342, 400, 731, 999, 1566
MboI GATC 6 cut(s) 40, 340, 398, 729, 997, 1564
MboII GAAGA 5 cut(s) 437, 737, 1070, 1562, 1584
MflI RGATCY 1 cut(s) 40
MhlI GDGCHC 1 cut(s) 471
MluCI AATT 9 cut(s) 190, 200, 262, 508, 629, 1277, 1298, 1334, 1390
MlyI GAGTC 4 cut(s) 77, 845, 1055, 1516
MmeI TCCRAC 3 cut(s) 258, 402, 858
MroXI GAANNNNTTC 1 cut(s) 1147
MseI TTAA 3 cut(s) 303, 528, 714
MslI CAYNNNNRTG 1 cut(s) 909
MspI CCGG 2 cut(s) 209, 406
MspR9I CCNGG 1 cut(s) 1493
Mva1269I GAATGC 1 cut(s) 1117
MvaI CCWGG 1 cut(s) 1493
MvnI CGCG 3 cut(s) 12, 14, 1479
MwoI GCNNNNNNNGC 4 cut(s) 111, 440, 1112, 1268
NdeII GATC 6 cut(s) 40, 340, 398, 729, 997, 1564
NlaIII CATG 8 cut(s) 168, 337, 590, 599, 1011, 1091, 1186, 1464
NlaIV GGNNCC 1 cut(s) 1317
NmuCI GTSAC 5 cut(s) 598, 902, 1094, 1178, 1456
NspI RCATGY 3 cut(s) 168, 1011, 1091
PaeI GCATGC 1 cut(s) 168
PagI TCATGA 1 cut(s) 586
PciI ACATGT 1 cut(s) 1007
PctI GAATGC 1 cut(s) 1117
PdmI GAANNNNTTC 1 cut(s) 1147
PfeI GAWTC 8 cut(s) 179, 495, 1143, 1157, 1346, 1426, 1553, 1665
PkrI GCNGC 9 cut(s) 16, 141, 163, 373, 433, 539, 829, 1201, 1273
PleI GAGTC 4 cut(s) 77, 845, 1055, 1515
PpsI GAGTC 4 cut(s) 77, 845, 1055, 1515
PscI ACATGT 1 cut(s) 1007
Psp1406I AACGTT 1 cut(s) 1252
Psp6I CCWGG 1 cut(s) 1491
PspGI CCWGG 1 cut(s) 1491
PspN4I GGNNCC 1 cut(s) 1317
PspPI GGNCC 3 cut(s) 680, 1315, 1533
PstI CTGCAG 1 cut(s) 1273
PstNI CAGNNNCTG 1 cut(s) 1429
PsuI RGATCY 1 cut(s) 40
RsaI GTAC 5 cut(s) 244, 652, 919, 1118, 1581
RsaNI GTAC 5 cut(s) 243, 651, 918, 1117, 1580
RseI CAYNNNNRTG 1 cut(s) 909
SalI GTCGAC 1 cut(s) 275
SaqAI TTAA 3 cut(s) 303, 528, 714
SatI GCNGC 9 cut(s) 15, 140, 162, 372, 432, 538, 828, 1200, 1272
Sau3AI GATC 6 cut(s) 40, 340, 398, 729, 997, 1564
Sau96I GGNCC 3 cut(s) 680, 1315, 1533
ScaI AGTACT 1 cut(s) 919
SchI GAGTC 4 cut(s) 77, 845, 1055, 1516
ScrFI CCNGG 1 cut(s) 1493
SduI GDGCHC 1 cut(s) 471
SfaNI GCATC 2 cut(s) 1045, 1053
SfcI CTRYAG 3 cut(s) 969, 1269, 1341
SinI GGWCC 2 cut(s) 680, 1533
SmiMI CAYNNNNRTG 1 cut(s) 909
SpeI ACTAGT 1 cut(s) 653
SphI GCATGC 1 cut(s) 168
Sse9I AATT 9 cut(s) 190, 200, 262, 508, 629, 1277, 1298, 1334, 1390
SspMI CTAG 5 cut(s) 485, 654, 1127, 1419, 1530
StyD4I CCNGG 1 cut(s) 1491
TaiI ACGT 5 cut(s) 581, 878, 1104, 1255, 1581
TaqI TCGA 8 cut(s) 27, 276, 791, 799, 996, 1151, 1556, 1663
TasI AATT 9 cut(s) 190, 200, 262, 508, 629, 1277, 1298, 1334, 1390
TatI WGTACW 1 cut(s) 917
TauI GCSGC 4 cut(s) 17, 142, 164, 374
TfiI GAWTC 8 cut(s) 179, 495, 1143, 1157, 1346, 1426, 1553, 1665
Tru1I TTAA 3 cut(s) 303, 528, 714
Tru9I TTAA 3 cut(s) 303, 528, 714
TscAI CASTG 5 cut(s) 107, 670, 739, 942, 1604
TseFI GTSAC 5 cut(s) 598, 902, 1094, 1178, 1456
TseI GCWGC 5 cut(s) 431, 537, 827, 1199, 1271
Tsp45I GTSAC 5 cut(s) 598, 902, 1094, 1178, 1456
TspDTI ATGAA 5 cut(s) 171, 370, 584, 945, 962
TspGWI ACGGA 4 cut(s) 230, 343, 495, 1136
TspRI CASTG 5 cut(s) 107, 670, 739, 942, 1604
VneI GTGCAC 1 cut(s) 467
VpaK11BI GGWCC 2 cut(s) 680, 1533
XapI RAATTY 1 cut(s) 1277
XceI RCATGY 3 cut(s) 168, 1011, 1091
XmiI GTMKAC 1 cut(s) 276
XmnI GAANNNNTTC 1 cut(s) 1147
XspI CTAG 5 cut(s) 485, 654, 1127, 1419, 1530
ZraI GACGTC 1 cut(s) 579
ZrmI AGTACT 1 cut(s) 919
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.