Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006147

Physical Location & Seq

Genomic Coordinates Reverse (-)

11658063 .. 11660559

Gene Structure 2497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0087100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGCCCAGACCCAACGACGGAGCTCCGAGTGCCCAAAACATAATCCCCGGCGACGGAATTGGACCGCTCGTAATGAATGCCGTCGAGCAGGTGATCGAGTACCTCGATCTGTTTGGTTTTGATGCAATTTATCAATGCAAGGTAATTGTTAAGCTTAAGTATGCAGATCTTGTTTCCATACTTCCAACCAATGTCAGTGTAGTAGTATGGCCCATTCAAATCTGGAGATTCAGTGTAAATATATCAACCATGAATACACTGGAAGGTCCAACTTGTCTACTCTATGCAGAGGATGCCTTACGAACTATGAGCTTACTTGAAGCATATATGATTGTCTTGAATTTGCCATATAAGCTCTTCGGAAAATGCACAAAGAGTCCGCTTAATATCACACTTGTGAACGCAGCTGAATTTGTACAAAGCCATAGCAAAAATTGGTTTCGGGAAAAGGATAGCTCTCTGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SET

Protein Analysis

155

Amino Acids

17.33

Weight (kDa)

5.32

Isoelectric Point (pI)

46.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43245 AT1G43245
fragaria_vesca	FvH4_2g13430
malus_domestica	MD05G1027900.v1.1
prunus_persica	Prupe.8G033600_v2.0.a1 Prupe.8G033600_v2.0.a1
pyrus_communis	pycom05g02000
rosa_chinensis	RchiOBHm_Chr5g0050861 RchiOBHm_Chr6g0275051
rosa_laevigata	RLG00000013502
rosa_multiflora	Rmu_sc0000181.1_g000001 Rmu_sc0000447.1_g000003 Rmu_sc0020326.1_g000001
rosa_roxburghii	Rroxscaffold_7G00193730
rosa_rugosa	Rorug05G0264900.1 Rorug06G0087100 Rorug06G0087100
rosa_samantha	Rh5AG336700 Rh5BG346300 Rh5CG373900 Rh5CG374000 Rh5DG359200 Rh6AG202000 Rh6BG205500 Rh6CG207300 Rh6DG197300
rosa_wichuraiana	Rw6G017560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	79
Acc36I	ACCTGC	1 cut(s)	79
AccBSI	CCGCTC	1 cut(s)	67
AccI	GTMKAC	1 cut(s)	277
AciI	CCGC	2 cut(s)	65, 380
AcsI	RAATTY	2 cut(s)	340, 410
AfaI	GTAC	2 cut(s)	101, 417
AfiI	CCNNNNNNNGG	2 cut(s)	17, 53
AflII	CTTAAG	1 cut(s)	155
AgsI	TTSAA	3 cut(s)	218, 320, 340
AleI	CACNNNNGTG	1 cut(s)	395
AluBI	AGCT	6 cut(s)	23, 154, 312, 355, 407, 456
AluI	AGCT	6 cut(s)	23, 154, 312, 355, 407, 456
Alw21I	GWGCWC	1 cut(s)	25
AoxI	GGCC	1 cut(s)	209
ApeKI	GCWGC	1 cut(s)	404
ApoI	RAATTY	2 cut(s)	340, 410
AspS9I	GGNCC	3 cut(s)	62, 210, 266
AsuC2I	CCSGG	1 cut(s)	48
AsuHPI	GGTGA	1 cut(s)	103
AvaII	GGWCC	2 cut(s)	62, 266
BaeGI	GKGCMC	1 cut(s)	34
BanII	GRGCYC	1 cut(s)	25
Bbv12I	GWGCWC	1 cut(s)	25
BbvI	GCAGC	1 cut(s)	416
BceAI	ACGGC	1 cut(s)	65
BcnI	CCSGG	1 cut(s)	48
BfaI	CTAG	1 cut(s)	466
BfrI	CTTAAG	1 cut(s)	155
BfuAI	ACCTGC	1 cut(s)	79
BglII	AGATCT	1 cut(s)	166
BisI	GCNGC	1 cut(s)	405
BlsI	GCNGC	1 cut(s)	406
Bme1390I	CCNGG	1 cut(s)	48
Bme18I	GGWCC	2 cut(s)	62, 266
BmgT120I	GGNCC	3 cut(s)	62, 210, 266
BmrFI	CCNGG	1 cut(s)	48
BmsI	GCATC	2 cut(s)	112, 283
BpmI	CTGGAG	1 cut(s)	244
BpuMI	CCSGG	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	46
BsaXI	ACNNNNNCTCC	2 cut(s)	217, 247
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 53
Bse1I	ACTGG	1 cut(s)	264
BseDI	CCNNGG	1 cut(s)	46
BseGI	GGATG	1 cut(s)	298
BseLI	CCNNNNNNNGG	2 cut(s)	17, 53
BseNI	ACTGG	1 cut(s)	264
BseSI	GKGCMC	1 cut(s)	34
BseXI	GCAGC	1 cut(s)	416
BshFI	GGCC	1 cut(s)	211
BsiHKAI	GWGCWC	1 cut(s)	25
BsiSI	CCGG	1 cut(s)	48
BslI	CCNNNNNNNGG	2 cut(s)	17, 53
BsmI	GAATGC	1 cut(s)	82
BsnI	GGCC	1 cut(s)	211
Bsp1286I	GDGCHC	2 cut(s)	25, 34
Bsp1407I	TGTACA	1 cut(s)	415
Bsp143I	GATC	4 cut(s)	93, 106, 166, 462
BspACI	CCGC	2 cut(s)	65, 380
BspANI	GGCC	1 cut(s)	211
BspMI	ACCTGC	1 cut(s)	79
BspQI	GCTCTTC	1 cut(s)	362
BspTI	CTTAAG	1 cut(s)	155
BsrBI	CCGCTC	1 cut(s)	67
BsrGI	TGTACA	1 cut(s)	415
BsrI	ACTGG	1 cut(s)	264
BssECI	CCNNGG	1 cut(s)	46
BssMI	GATC	4 cut(s)	93, 106, 166, 462
Bst6I	CTCTTC	1 cut(s)	362
BstAFI	CTTAAG	1 cut(s)	155
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstAUI	TGTACA	1 cut(s)	415
BstF5I	GGATG	1 cut(s)	298
BstKTI	GATC	4 cut(s)	96, 109, 169, 465
BstMBI	GATC	4 cut(s)	93, 106, 166, 462
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 293, 352
BstSCI	CCNGG	1 cut(s)	46
BstSLI	GKGCMC	1 cut(s)	34
BstV1I	GCAGC	1 cut(s)	416
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
BsuRI	GGCC	1 cut(s)	211
BtsCI	GGATG	1 cut(s)	298
BtsIMutI	CAGTG	3 cut(s)	202, 238, 257
BveI	ACCTGC	1 cut(s)	79
Cfr13I	GGNCC	3 cut(s)	62, 210, 266
Csp6I	GTAC	2 cut(s)	100, 416
CviAII	CATG	1 cut(s)	250
CviJI	RGCY	8 cut(s)	23, 154, 211, 312, 355, 407, 423, 456
CviKI_1	RGCY	8 cut(s)	23, 154, 211, 312, 355, 407, 423, 456
CviQI	GTAC	2 cut(s)	100, 416
DpnI	GATC	4 cut(s)	95, 108, 168, 464
DpnII	GATC	4 cut(s)	93, 106, 166, 462
Eam1104I	CTCTTC	1 cut(s)	362
EarI	CTCTTC	1 cut(s)	362
Ecl136II	GAGCTC	1 cut(s)	23
Eco24I	GRGCYC	1 cut(s)	25
Eco47I	GGWCC	2 cut(s)	62, 266
Eco53kI	GAGCTC	1 cut(s)	23
EcoICRI	GAGCTC	1 cut(s)	23
EcoT38I	GRGCYC	1 cut(s)	25
FaeI	CATG	1 cut(s)	253
FatI	CATG	1 cut(s)	249
FblI	GTMKAC	1 cut(s)	277
Fnu4HI	GCNGC	1 cut(s)	405
FokI	GGATG	1 cut(s)	305
FriOI	GRGCYC	1 cut(s)	25
Fsp4HI	GCNGC	1 cut(s)	405
FspBI	CTAG	1 cut(s)	466
GluI	GCNGC	1 cut(s)	405
GsuI	CTGGAG	1 cut(s)	244
HaeIII	GGCC	1 cut(s)	211
HapII	CCGG	1 cut(s)	48
Hin1II	CATG	1 cut(s)	253
HindIII	AAGCTT	1 cut(s)	152
HinfI	GANTC	2 cut(s)	228, 376
HpaII	CCGG	1 cut(s)	48
HphI	GGTGA	1 cut(s)	103
Hpy166II	GTNNAC	2 cut(s)	278, 400
Hpy188I	TCNGA	3 cut(s)	27, 362, 462
Hpy188III	TCNNGA	3 cut(s)	223, 337, 443
Hpy8I	GTNNAC	2 cut(s)	278, 400
Hpy99I	CGWCG	3 cut(s)	20, 56, 86
HpyAV	CCTTC	1 cut(s)	257
HpyCH4V	TGCA	5 cut(s)	125, 138, 164, 287, 369
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 293, 352
Hsp92II	CATG	1 cut(s)	253
Kzo9I	GATC	4 cut(s)	93, 106, 166, 462
LguI	GCTCTTC	1 cut(s)	362
LmnI	GCTCC	2 cut(s)	20, 28
LpnPI	CCDG	5 cut(s)	19, 61, 74, 208, 245
Lsp1109I	GCAGC	1 cut(s)	416
LweI	GCATC	2 cut(s)	112, 283
MaeI	CTAG	1 cut(s)	466
MalI	GATC	4 cut(s)	95, 108, 168, 464
MbiI	CCGCTC	1 cut(s)	67
MboI	GATC	4 cut(s)	93, 106, 166, 462
MboII	GAAGA	1 cut(s)	349
MflI	RGATCY	1 cut(s)	166
MhlI	GDGCHC	2 cut(s)	25, 34
MluCI	AATT	6 cut(s)	57, 126, 144, 340, 410, 433
MlyI	GAGTC	1 cut(s)	385
MmeI	TCCRAC	2 cut(s)	209, 293
MnlI	CCTC	2 cut(s)	113, 283
MseI	TTAA	3 cut(s)	150, 156, 384
MslI	CAYNNNNRTG	1 cut(s)	395
MspA1I	CMGCKG	1 cut(s)	407
MspCI	CTTAAG	1 cut(s)	155
MspI	CCGG	1 cut(s)	48
MspR9I	CCNGG	1 cut(s)	48
Mva1269I	GAATGC	1 cut(s)	82
MwoI	GCNNNNNNNGC	3 cut(s)	29, 293, 352
NciI	CCSGG	1 cut(s)	48
NdeII	GATC	4 cut(s)	93, 106, 166, 462
NlaIII	CATG	1 cut(s)	253
OliI	CACNNNNGTG	1 cut(s)	395
PaqCI	CACCTGC	1 cut(s)	79
PciSI	GCTCTTC	1 cut(s)	362
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PctI	GAATGC	1 cut(s)	82
PfeI	GAWTC	1 cut(s)	228
PkrI	GCNGC	1 cut(s)	406
PleI	GAGTC	1 cut(s)	384
PpsI	GAGTC	1 cut(s)	384
Psp124BI	GAGCTC	1 cut(s)	25
PspPI	GGNCC	3 cut(s)	62, 210, 266
PsuI	RGATCY	1 cut(s)	166
PvuII	CAGCTG	1 cut(s)	407
RsaI	GTAC	2 cut(s)	101, 417
RsaNI	GTAC	2 cut(s)	100, 416
RseI	CAYNNNNRTG	1 cut(s)	395
SacI	GAGCTC	1 cut(s)	25
SapI	GCTCTTC	1 cut(s)	362
SaqAI	TTAA	3 cut(s)	150, 156, 384
SatI	GCNGC	1 cut(s)	405
Sau3AI	GATC	4 cut(s)	93, 106, 166, 462
Sau96I	GGNCC	3 cut(s)	62, 210, 266
SchI	GAGTC	1 cut(s)	385
ScrFI	CCNGG	1 cut(s)	48
SduI	GDGCHC	2 cut(s)	25, 34
SfaNI	GCATC	2 cut(s)	112, 283
SinI	GGWCC	2 cut(s)	62, 266
SmiMI	CAYNNNNRTG	1 cut(s)	395
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	6 cut(s)	57, 126, 144, 340, 410, 433
SsiI	CCGC	2 cut(s)	65, 380
SspMI	CTAG	1 cut(s)	466
SstI	GAGCTC	1 cut(s)	25
StyD4I	CCNGG	1 cut(s)	46
TaqI	TCGA	3 cut(s)	84, 96, 105
TasI	AATT	6 cut(s)	57, 126, 144, 340, 410, 433
TatI	WGTACW	1 cut(s)	415
TfiI	GAWTC	1 cut(s)	228
Tru1I	TTAA	3 cut(s)	150, 156, 384
Tru9I	TTAA	3 cut(s)	150, 156, 384
TscAI	CASTG	3 cut(s)	202, 238, 264
TseI	GCWGC	1 cut(s)	404
TspDTI	ATGAA	2 cut(s)	89, 266
TspGWI	ACGGA	2 cut(s)	33, 69
TspRI	CASTG	3 cut(s)	202, 238, 264
Vha464I	CTTAAG	1 cut(s)	155
VpaK11BI	GGWCC	2 cut(s)	62, 266
XapI	RAATTY	2 cut(s)	340, 410
XcmI	CCANNNNNNNNNTGG	1 cut(s)	256
XmiI	GTMKAC	1 cut(s)	277
XspI	CTAG	1 cut(s)	466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.