Protein SET DOMAIN GROUP
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G43245 AT1G43245 |
| fragaria_vesca | FvH4_2g13430 |
| malus_domestica | MD05G1027900.v1.1 |
| prunus_persica | Prupe.8G033600_v2.0.a1 Prupe.8G033600_v2.0.a1 |
| pyrus_communis | pycom05g02000 |
| rosa_chinensis | RchiOBHm_Chr5g0050861 RchiOBHm_Chr6g0275051 |
| rosa_laevigata | RLG00000013502 |
| rosa_multiflora | Rmu_sc0000181.1_g000001 Rmu_sc0000447.1_g000003 Rmu_sc0020326.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00193730 |
| rosa_rugosa | Rorug05G0264900.1 Rorug06G0087100 Rorug06G0087100 |
| rosa_samantha | Rh5AG336700 Rh5BG346300 Rh5CG373900 Rh5CG374000 Rh5DG359200 Rh6AG202000 Rh6BG205500 Rh6CG207300 Rh6DG197300 |
| rosa_wichuraiana | Rw6G017560 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1847 |
| Acc36I | ACCTGC | 1 cut(s) | 1066 |
| Acc65I | GGTACC | 1 cut(s) | 1745 |
| AccB1I | GGYRCC | 2 cut(s) | 431, 1745 |
| AccBSI | CCGCTC | 1 cut(s) | 353 |
| AccI | GTMKAC | 1 cut(s) | 1739 |
| AccII | CGCG | 2 cut(s) | 306, 426 |
| AclWI | GGATC | 2 cut(s) | 605, 1544 |
| AcoI | YGGCCR | 2 cut(s) | 553, 661 |
| AcsI | RAATTY | 3 cut(s) | 420, 703, 1526 |
| AcuI | CTGAAG | 1 cut(s) | 1179 |
| AcyI | GRCGYC | 3 cut(s) | 432, 486, 670 |
| AfaI | GTAC | 5 cut(s) | 578, 797, 1080, 1181, 1747 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 913, 1111, 1657, 1755 |
| AgsI | TTSAA | 8 cut(s) | 940, 973, 1150, 1242, 1574, 1643, 1704, 1713 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1033 |
| AjnI | CCWGG | 4 cut(s) | 434, 452, 513, 540 |
| AluBI | AGCT | 6 cut(s) | 609, 969, 1025, 1274, 1328, 1422 |
| AluI | AGCT | 6 cut(s) | 609, 969, 1025, 1274, 1328, 1422 |
| Alw21I | GWGCWC | 3 cut(s) | 866, 1424, 1514 |
| Alw26I | GTCTC | 4 cut(s) | 661, 771, 972, 1340 |
| AlwI | GGATC | 2 cut(s) | 605, 1544 |
| Ama87I | CYCGRG | 1 cut(s) | 1829 |
| AoxI | GGCC | 3 cut(s) | 370, 553, 661 |
| ApeKI | GCWGC | 3 cut(s) | 675, 1298, 1325 |
| ApoI | RAATTY | 3 cut(s) | 420, 703, 1526 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1771 |
| Asp718I | GGTACC | 1 cut(s) | 1745 |
| AspLEI | GCGC | 5 cut(s) | 233, 308, 434, 1298, 1325 |
| AspS9I | GGNCC | 3 cut(s) | 517, 538, 734 |
| AsuHPI | GGTGA | 3 cut(s) | 879, 1154, 1322 |
| AsuII | TTCGAA | 1 cut(s) | 1530 |
| AvaI | CYCGRG | 1 cut(s) | 1829 |
| AvaII | GGWCC | 3 cut(s) | 517, 538, 734 |
| BanI | GGYRCC | 2 cut(s) | 431, 1745 |
| BanII | GRGCYC | 1 cut(s) | 1424 |
| BbsI | GAAGAC | 1 cut(s) | 1800 |
| Bbv12I | GWGCWC | 3 cut(s) | 866, 1424, 1514 |
| BbvI | GCAGC | 3 cut(s) | 662, 1310, 1337 |
| BccI | CCATC | 4 cut(s) | 660, 1440, 1513, 1868 |
| BceAI | ACGGC | 4 cut(s) | 301, 445, 473, 515 |
| BciT130I | CCWGG | 4 cut(s) | 436, 454, 515, 542 |
| BcoDI | GTCTC | 4 cut(s) | 661, 771, 972, 1340 |
| BfaI | CTAG | 1 cut(s) | 1358 |
| BfmI | CTRYAG | 2 cut(s) | 1020, 1677 |
| BfoI | RGCGCY | 2 cut(s) | 234, 435 |
| BfuAI | ACCTGC | 1 cut(s) | 1066 |
| BisI | GCNGC | 8 cut(s) | 309, 556, 649, 673, 676, 1299, 1326, 1651 |
| BlsI | GCNGC | 8 cut(s) | 310, 557, 650, 674, 677, 1300, 1327, 1652 |
| Bme1390I | CCNGG | 4 cut(s) | 436, 454, 515, 542 |
| Bme18I | GGWCC | 3 cut(s) | 517, 538, 734 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1033 |
| BmeT110I | CYCGRG | 1 cut(s) | 1829 |
| BmgT120I | GGNCC | 3 cut(s) | 517, 538, 734 |
| BmiI | GGNNCC | 2 cut(s) | 433, 1747 |
| BmrFI | CCNGG | 4 cut(s) | 436, 454, 515, 542 |
| BmsI | GCATC | 6 cut(s) | 372, 765, 893, 1006, 1168, 1589 |
| BpiI | GAAGAC | 1 cut(s) | 1800 |
| BpmI | CTGGAG | 2 cut(s) | 211, 1450 |
| Bpu10I | CCTNAGC | 1 cut(s) | 471 |
| Bpu14I | TTCGAA | 1 cut(s) | 1530 |
| BpuEI | CTTGAG | 1 cut(s) | 1091 |
| BsaAI | YACGTR | 1 cut(s) | 795 |
| BsaHI | GRCGYC | 3 cut(s) | 432, 486, 670 |
| BsaJI | CCNNGG | 4 cut(s) | 283, 435, 562, 1584 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 275, 305, 768, 798 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 913, 1111, 1657, 1755 |
| Bse118I | RCCGGY | 1 cut(s) | 551 |
| Bse1I | ACTGG | 4 cut(s) | 1148, 1553, 1747, 1804 |
| Bse3DI | GCAATG | 1 cut(s) | 1154 |
| BseBI | CCWGG | 4 cut(s) | 436, 454, 515, 542 |
| BseDI | CCNNGG | 4 cut(s) | 283, 435, 562, 1584 |
| BseGI | GGATG | 3 cut(s) | 1580, 1818, 1840 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 913, 1111, 1657, 1755 |
| BseMI | GCAATG | 1 cut(s) | 1154 |
| BseMII | CTCAG | 3 cut(s) | 430, 485, 1748 |
| BseNI | ACTGG | 4 cut(s) | 1148, 1553, 1747, 1804 |
| BseRI | GAGGAG | 8 cut(s) | 41, 57, 91, 126, 245, 283, 311, 512 |
| BseX3I | CGGCCG | 1 cut(s) | 553 |
| BseXI | GCAGC | 3 cut(s) | 662, 1310, 1337 |
| BseYI | CCCAGC | 1 cut(s) | 1391 |
| Bsh1236I | CGCG | 2 cut(s) | 306, 426 |
| Bsh1285I | CGRYCG | 2 cut(s) | 556, 1389 |
| BshFI | GGCC | 3 cut(s) | 372, 555, 663 |
| BshNI | GGYRCC | 2 cut(s) | 431, 1745 |
| BsiEI | CGRYCG | 2 cut(s) | 556, 1389 |
| BsiHKAI | GWGCWC | 3 cut(s) | 866, 1424, 1514 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1829 |
| BsiSI | CCGG | 3 cut(s) | 369, 552, 664 |
| BslFI | GGGAC | 1 cut(s) | 1674 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 913, 1111, 1657, 1755 |
| BsmAI | GTCTC | 4 cut(s) | 661, 771, 972, 1340 |
| BsmBI | CGTCTC | 3 cut(s) | 661, 771, 1340 |
| BsmFI | GGGAC | 1 cut(s) | 1674 |
| BsmI | GAATGC | 1 cut(s) | 725 |
| BsnI | GGCC | 3 cut(s) | 372, 555, 663 |
| BsoBI | CYCGRG | 1 cut(s) | 1829 |
| Bsp119I | TTCGAA | 1 cut(s) | 1530 |
| Bsp1286I | GDGCHC | 3 cut(s) | 866, 1424, 1514 |
| Bsp143I | GATC | 3 cut(s) | 597, 1386, 1549 |
| Bsp68I | TCGCGA | 1 cut(s) | 426 |
| BspANI | GGCC | 3 cut(s) | 372, 555, 663 |
| BspCNI | CTCAG | 3 cut(s) | 429, 484, 1747 |
| BspFNI | CGCG | 2 cut(s) | 306, 426 |
| BspHI | TCATGA | 1 cut(s) | 1546 |
| BspLI | GGNNCC | 2 cut(s) | 433, 1747 |
| BspMI | ACCTGC | 1 cut(s) | 1066 |
| BspPI | GGATC | 2 cut(s) | 605, 1544 |
| BspQI | GCTCTTC | 1 cut(s) | 118 |
| BspT104I | TTCGAA | 1 cut(s) | 1530 |
| BspT107I | GGYRCC | 2 cut(s) | 431, 1745 |
| BsrBI | CCGCTC | 1 cut(s) | 353 |
| BsrDI | GCAATG | 1 cut(s) | 1154 |
| BsrFI | RCCGGY | 1 cut(s) | 551 |
| BsrI | ACTGG | 4 cut(s) | 1148, 1553, 1747, 1804 |
| BssAI | RCCGGY | 1 cut(s) | 551 |
| BssECI | CCNNGG | 4 cut(s) | 283, 435, 562, 1584 |
| BssMI | GATC | 3 cut(s) | 597, 1386, 1549 |
| BssNI | GRCGYC | 3 cut(s) | 432, 486, 670 |
| BssT1I | CCWWGG | 1 cut(s) | 1584 |
| Bst2UI | CCWGG | 4 cut(s) | 436, 454, 515, 542 |
| Bst4CI | ACNGT | 4 cut(s) | 908, 1334, 1484, 1754 |
| Bst6I | CTCTTC | 3 cut(s) | 18, 118, 949 |
| BstACI | GRCGYC | 3 cut(s) | 432, 486, 670 |
| BstBAI | YACGTR | 1 cut(s) | 795 |
| BstBI | TTCGAA | 1 cut(s) | 1530 |
| BstC8I | GCNNGC | 5 cut(s) | 625, 1317, 1321, 1691, 1859 |
| BstDEI | CTNAG | 4 cut(s) | 416, 471, 1416, 1734 |
| BstDSI | CCRYGG | 1 cut(s) | 283 |
| BstF5I | GGATG | 3 cut(s) | 1580, 1818, 1840 |
| BstFNI | CGCG | 2 cut(s) | 306, 426 |
| BstH2I | RGCGCY | 2 cut(s) | 234, 435 |
| BstHHI | GCGC | 5 cut(s) | 233, 308, 434, 1298, 1325 |
| BstKTI | GATC | 3 cut(s) | 600, 1389, 1552 |
| BstMAI | GTCTC | 4 cut(s) | 661, 771, 972, 1340 |
| BstMBI | GATC | 3 cut(s) | 597, 1386, 1549 |
| BstMCI | CGRYCG | 2 cut(s) | 556, 1389 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 117, 249, 369, 645, 654, 669, 1293, 1325 |
| BstNI | CCWGG | 4 cut(s) | 436, 454, 515, 542 |
| BstNSI | RCATGY | 1 cut(s) | 1580 |
| BstSCI | CCNGG | 4 cut(s) | 434, 452, 513, 540 |
| BstSFI | CTRYAG | 2 cut(s) | 1020, 1677 |
| BstSNI | TACGTA | 1 cut(s) | 795 |
| BstUI | CGCG | 2 cut(s) | 306, 426 |
| BstV1I | GCAGC | 3 cut(s) | 662, 1310, 1337 |
| BstV2I | GAAGAC | 1 cut(s) | 1800 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 659 |
| BstZI | CGGCCG | 1 cut(s) | 553 |
| BsuRI | GGCC | 3 cut(s) | 372, 555, 663 |
| BtgI | CCRYGG | 1 cut(s) | 283 |
| BtgZI | GCGATG | 1 cut(s) | 638 |
| BtsCI | GGATG | 3 cut(s) | 1580, 1818, 1840 |
| BtsI | GCAGTG | 3 cut(s) | 106, 579, 664 |
| BtsIMutI | CAGTG | 5 cut(s) | 106, 579, 664, 798, 1560 |
| BtuMI | TCGCGA | 1 cut(s) | 426 |
| BveI | ACCTGC | 1 cut(s) | 1066 |
| Cac8I | GCNNGC | 5 cut(s) | 625, 1317, 1321, 1691, 1859 |
| CciI | TCATGA | 1 cut(s) | 1546 |
| CfoI | GCGC | 5 cut(s) | 233, 308, 434, 1298, 1325 |
| Cfr10I | RCCGGY | 1 cut(s) | 551 |
| Cfr13I | GGNCC | 3 cut(s) | 517, 538, 734 |
| CseI | GACGC | 2 cut(s) | 494, 678 |
| Csp6I | GTAC | 5 cut(s) | 577, 796, 1079, 1180, 1746 |
| CviAII | CATG | 6 cut(s) | 173, 867, 1262, 1282, 1547, 1577 |
| CviQI | GTAC | 5 cut(s) | 577, 796, 1079, 1180, 1746 |
| DdeI | CTNAG | 4 cut(s) | 416, 471, 1416, 1734 |
| DinI | GGCGCC | 1 cut(s) | 433 |
| DpnI | GATC | 3 cut(s) | 599, 1388, 1551 |
| DpnII | GATC | 3 cut(s) | 597, 1386, 1549 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1033 |
| EaeI | YGGCCR | 2 cut(s) | 553, 661 |
| EagI | CGGCCG | 1 cut(s) | 553 |
| Eam1104I | CTCTTC | 3 cut(s) | 18, 118, 949 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1033 |
| EarI | CTCTTC | 3 cut(s) | 18, 118, 949 |
| EciI | GGCGGA | 3 cut(s) | 190, 239, 305 |
| Ecl136II | GAGCTC | 1 cut(s) | 1422 |
| EclXI | CGGCCG | 1 cut(s) | 553 |
| Eco105I | TACGTA | 1 cut(s) | 795 |
| Eco130I | CCWWGG | 1 cut(s) | 1584 |
| Eco24I | GRGCYC | 1 cut(s) | 1424 |
| Eco32I | GATATC | 1 cut(s) | 922 |
| Eco47I | GGWCC | 3 cut(s) | 517, 538, 734 |
| Eco52I | CGGCCG | 1 cut(s) | 553 |
| Eco53kI | GAGCTC | 1 cut(s) | 1422 |
| Eco57I | CTGAAG | 1 cut(s) | 1179 |
| Eco88I | CYCGRG | 1 cut(s) | 1829 |
| EcoICRI | GAGCTC | 1 cut(s) | 1422 |
| EcoRI | GAATTC | 1 cut(s) | 420 |
| EcoRII | CCWGG | 4 cut(s) | 434, 452, 513, 540 |
| EcoRV | GATATC | 1 cut(s) | 922 |
| EcoT14I | CCWWGG | 1 cut(s) | 1584 |
| EcoT22I | ATGCAT | 1 cut(s) | 1582 |
| EcoT38I | GRGCYC | 1 cut(s) | 1424 |
| EgeI | GGCGCC | 1 cut(s) | 433 |
| EheI | GGCGCC | 1 cut(s) | 433 |
| ErhI | CCWWGG | 1 cut(s) | 1584 |
| Esp3I | CGTCTC | 3 cut(s) | 661, 771, 1340 |
| FaeI | CATG | 6 cut(s) | 176, 870, 1265, 1285, 1550, 1580 |
| FaqI | GGGAC | 1 cut(s) | 1674 |
| FatI | CATG | 6 cut(s) | 172, 866, 1261, 1281, 1546, 1576 |
| FauI | CCCGC | 3 cut(s) | 343, 368, 716 |
| FblI | GTMKAC | 1 cut(s) | 1739 |
| Fnu4HI | GCNGC | 8 cut(s) | 309, 556, 649, 673, 676, 1299, 1326, 1651 |
| FokI | GGATG | 3 cut(s) | 1567, 1825, 1847 |
| FriOI | GRGCYC | 1 cut(s) | 1424 |
| Fsp4HI | GCNGC | 8 cut(s) | 309, 556, 649, 673, 676, 1299, 1326, 1651 |
| FspBI | CTAG | 1 cut(s) | 1358 |
| GlaI | GCGC | 5 cut(s) | 232, 307, 433, 1297, 1324 |
| GluI | GCNGC | 8 cut(s) | 309, 556, 649, 673, 676, 1299, 1326, 1651 |
| GsaI | CCCAGC | 1 cut(s) | 1395 |
| GsuI | CTGGAG | 2 cut(s) | 211, 1450 |
| HaeII | RGCGCY | 2 cut(s) | 234, 435 |
| HaeIII | GGCC | 3 cut(s) | 372, 555, 663 |
| HapII | CCGG | 3 cut(s) | 369, 552, 664 |
| HgaI | GACGC | 2 cut(s) | 494, 678 |
| HhaI | GCGC | 5 cut(s) | 233, 308, 434, 1298, 1325 |
| Hin1I | GRCGYC | 3 cut(s) | 432, 486, 670 |
| Hin1II | CATG | 6 cut(s) | 176, 870, 1265, 1285, 1550, 1580 |
| Hin6I | GCGC | 5 cut(s) | 231, 306, 432, 1296, 1323 |
| HinP1I | GCGC | 5 cut(s) | 231, 306, 432, 1296, 1323 |
| HincII | GTYRAC | 3 cut(s) | 711, 904, 1137 |
| HindII | GTYRAC | 3 cut(s) | 711, 904, 1137 |
| HindIII | AAGCTT | 1 cut(s) | 1272 |
| HpaI | GTTAAC | 2 cut(s) | 711, 1137 |
| HpaII | CCGG | 3 cut(s) | 369, 552, 664 |
| HphI | GGTGA | 3 cut(s) | 879, 1154, 1322 |
| Hpy166II | GTNNAC | 7 cut(s) | 577, 711, 798, 904, 1137, 1182, 1740 |
| Hpy8I | GTNNAC | 7 cut(s) | 577, 711, 798, 904, 1137, 1182, 1740 |
| Hpy99I | CGWCG | 6 cut(s) | 410, 431, 482, 485, 488, 536 |
| HpyAV | CCTTC | 3 cut(s) | 104, 254, 341 |
| HpyCH4III | ACNGT | 4 cut(s) | 908, 1334, 1484, 1754 |
| HpyCH4IV | ACGT | 1 cut(s) | 794 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 117, 249, 369, 645, 654, 669, 1293, 1325 |
| HpyF3I | CTNAG | 4 cut(s) | 416, 471, 1416, 1734 |
| HpySE526I | ACGT | 1 cut(s) | 794 |
| Hsp92I | GRCGYC | 3 cut(s) | 432, 486, 670 |
| Hsp92II | CATG | 6 cut(s) | 176, 870, 1265, 1285, 1550, 1580 |
| HspAI | GCGC | 5 cut(s) | 231, 306, 432, 1296, 1323 |
| KasI | GGCGCC | 1 cut(s) | 431 |
| KpnI | GGTACC | 1 cut(s) | 1749 |
| KspAI | GTTAAC | 2 cut(s) | 711, 1137 |
| Kzo9I | GATC | 3 cut(s) | 597, 1386, 1549 |
| LguI | GCTCTTC | 1 cut(s) | 118 |
| LmnI | GCTCC | 4 cut(s) | 191, 203, 358, 753 |
| Lsp1109I | GCAGC | 3 cut(s) | 662, 1310, 1337 |
| LweI | GCATC | 6 cut(s) | 372, 765, 893, 1006, 1168, 1589 |
| MaeI | CTAG | 1 cut(s) | 1358 |
| MaeII | ACGT | 1 cut(s) | 794 |
| MaeIII | GTNAC | 3 cut(s) | 57, 784, 1603 |
| MalI | GATC | 3 cut(s) | 599, 1388, 1551 |
| MbiI | CCGCTC | 1 cut(s) | 353 |
| MboI | GATC | 3 cut(s) | 597, 1386, 1549 |
| MboII | GAAGA | 9 cut(s) | 35, 105, 936, 1047, 1133, 1227, 1230, 1344, 1805 |
| MfeI | CAATTG | 1 cut(s) | 1038 |
| MhlI | GDGCHC | 3 cut(s) | 866, 1424, 1514 |
| MluCI | AATT | 9 cut(s) | 163, 420, 567, 703, 836, 934, 1038, 1223, 1526 |
| Mly113I | GGCGCC | 1 cut(s) | 432 |
| MlyI | GAGTC | 5 cut(s) | 83, 284, 387, 474, 1256 |
| MmeI | TCCRAC | 2 cut(s) | 321, 380 |
| Mph1103I | ATGCAT | 1 cut(s) | 1582 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1771 |
| MseI | TTAA | 6 cut(s) | 50, 710, 1136, 1226, 1341, 1808 |
| MslI | CAYNNNNRTG | 3 cut(s) | 408, 657, 1872 |
| MspA1I | CMGCKG | 2 cut(s) | 609, 675 |
| MspI | CCGG | 3 cut(s) | 369, 552, 664 |
| MspR9I | CCNGG | 4 cut(s) | 436, 454, 515, 542 |
| MunI | CAATTG | 1 cut(s) | 1038 |
| Mva1269I | GAATGC | 1 cut(s) | 725 |
| MvaI | CCWGG | 4 cut(s) | 436, 454, 515, 542 |
| MvnI | CGCG | 2 cut(s) | 306, 426 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 117, 249, 369, 645, 654, 669, 1293, 1325 |
| NarI | GGCGCC | 1 cut(s) | 432 |
| NdeII | GATC | 3 cut(s) | 597, 1386, 1549 |
| NlaIII | CATG | 6 cut(s) | 176, 870, 1265, 1285, 1550, 1580 |
| NlaIV | GGNNCC | 2 cut(s) | 433, 1747 |
| NmeAIII | GCCGAG | 1 cut(s) | 259 |
| NmuCI | GTSAC | 3 cut(s) | 57, 784, 1603 |
| NruI | TCGCGA | 1 cut(s) | 426 |
| NsiI | ATGCAT | 1 cut(s) | 1582 |
| NspI | RCATGY | 1 cut(s) | 1580 |
| NspV | TTCGAA | 1 cut(s) | 1530 |
| PagI | TCATGA | 1 cut(s) | 1546 |
| PciSI | GCTCTTC | 1 cut(s) | 118 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 474, 486 |
| PctI | GAATGC | 1 cut(s) | 725 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1771 |
| PfeI | GAWTC | 7 cut(s) | 209, 581, 765, 1052, 1349, 1397, 1672 |
| PflFI | GACNNNGTC | 1 cut(s) | 782 |
| PfoI | TCCNGGA | 1 cut(s) | 540 |
| PkrI | GCNGC | 8 cut(s) | 310, 557, 650, 674, 677, 1300, 1327, 1652 |
| Ple19I | CGATCG | 1 cut(s) | 1389 |
| PleI | GAGTC | 5 cut(s) | 83, 284, 387, 473, 1255 |
| PluTI | GGCGCC | 1 cut(s) | 435 |
| PpsI | GAGTC | 5 cut(s) | 83, 284, 387, 473, 1255 |
| Ppu21I | YACGTR | 1 cut(s) | 795 |
| PsiI | TTATAA | 1 cut(s) | 1847 |
| Psp124BI | GAGCTC | 1 cut(s) | 1424 |
| Psp6I | CCWGG | 4 cut(s) | 434, 452, 513, 540 |
| PspFI | CCCAGC | 1 cut(s) | 1391 |
| PspGI | CCWGG | 4 cut(s) | 434, 452, 513, 540 |
| PspN4I | GGNNCC | 2 cut(s) | 433, 1747 |
| PspPI | GGNCC | 3 cut(s) | 517, 538, 734 |
| PsyI | GACNNNGTC | 1 cut(s) | 782 |
| PvuI | CGATCG | 1 cut(s) | 1389 |
| PvuII | CAGCTG | 1 cut(s) | 609 |
| RruI | TCGCGA | 1 cut(s) | 426 |
| RsaI | GTAC | 5 cut(s) | 578, 797, 1080, 1181, 1747 |
| RsaNI | GTAC | 5 cut(s) | 577, 796, 1079, 1180, 1746 |
| RseI | CAYNNNNRTG | 3 cut(s) | 408, 657, 1872 |
| SacI | GAGCTC | 1 cut(s) | 1424 |
| SapI | GCTCTTC | 1 cut(s) | 118 |
| SaqAI | TTAA | 6 cut(s) | 50, 710, 1136, 1226, 1341, 1808 |
| SatI | GCNGC | 8 cut(s) | 309, 556, 649, 673, 676, 1299, 1326, 1651 |
| Sau3AI | GATC | 3 cut(s) | 597, 1386, 1549 |
| Sau96I | GGNCC | 3 cut(s) | 517, 538, 734 |
| SchI | GAGTC | 5 cut(s) | 83, 284, 387, 474, 1256 |
| ScrFI | CCNGG | 4 cut(s) | 436, 454, 515, 542 |
| SduI | GDGCHC | 3 cut(s) | 866, 1424, 1514 |
| SfaNI | GCATC | 6 cut(s) | 372, 765, 893, 1006, 1168, 1589 |
| SfcI | CTRYAG | 2 cut(s) | 1020, 1677 |
| SfoI | GGCGCC | 1 cut(s) | 433 |
| SfuI | TTCGAA | 1 cut(s) | 1530 |
| SinI | GGWCC | 3 cut(s) | 517, 538, 734 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 408, 657, 1872 |
| SmlI | CTYRAG | 1 cut(s) | 1070 |
| SmoI | CTYRAG | 1 cut(s) | 1070 |
| SnaBI | TACGTA | 1 cut(s) | 795 |
| Sse9I | AATT | 9 cut(s) | 163, 420, 567, 703, 836, 934, 1038, 1223, 1526 |
| SspDI | GGCGCC | 1 cut(s) | 431 |
| SspI | AATATT | 1 cut(s) | 1709 |
| SspMI | CTAG | 1 cut(s) | 1358 |
| SstI | GAGCTC | 1 cut(s) | 1424 |
| StyD4I | CCNGG | 4 cut(s) | 434, 452, 513, 540 |
| StyI | CCWWGG | 1 cut(s) | 1584 |
| TaaI | ACNGT | 4 cut(s) | 908, 1334, 1484, 1754 |
| TaiI | ACGT | 1 cut(s) | 797 |
| TaqI | TCGA | 2 cut(s) | 534, 1530 |
| TasI | AATT | 9 cut(s) | 163, 420, 567, 703, 836, 934, 1038, 1223, 1526 |
| TauI | GCSGC | 5 cut(s) | 311, 558, 651, 675, 1653 |
| TfiI | GAWTC | 7 cut(s) | 209, 581, 765, 1052, 1349, 1397, 1672 |
| Tru1I | TTAA | 6 cut(s) | 50, 710, 1136, 1226, 1341, 1808 |
| Tru9I | TTAA | 6 cut(s) | 50, 710, 1136, 1226, 1341, 1808 |
| TscAI | CASTG | 5 cut(s) | 113, 579, 664, 805, 1560 |
| TseFI | GTSAC | 3 cut(s) | 57, 784, 1603 |
| TseI | GCWGC | 3 cut(s) | 675, 1298, 1325 |
| Tsp45I | GTSAC | 3 cut(s) | 57, 784, 1603 |
| TspDTI | ATGAA | 4 cut(s) | 1134, 1283, 1530, 1535 |
| TspRI | CASTG | 5 cut(s) | 113, 579, 664, 805, 1560 |
| Tth111I | GACNNNGTC | 1 cut(s) | 782 |
| VpaK11BI | GGWCC | 3 cut(s) | 517, 538, 734 |
| XapI | RAATTY | 3 cut(s) | 420, 703, 1526 |
| XceI | RCATGY | 1 cut(s) | 1580 |
| XmiI | GTMKAC | 1 cut(s) | 1739 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1771 |
| XspI | CTAG | 1 cut(s) | 1358 |
| Zsp2I | ATGCAT | 1 cut(s) | 1582 |