Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000447.1

Orthogroup ID

OG0006147

Physical Location & Seq

Genomic Coordinates Reverse (-)

20721 .. 21452

Gene Structure 732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000447.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

atggagatggagatggagatgagagccgaagaggagatagaagtaggacaagacttaaccccatcactccctcctctctctttcgctctccacgactcccttctctcctctcactgctcttcctgcttctctcccctccctcctcaaccttttcctcctctccatacccctccctttcccaacaattcccaccatgtccactactgctccccactctgctccgcctccgattctcccctccacctctccagcgccgagcctcgccttctccgcctcctccattcccacccctccacctacccccacggcgactcctccgacctccgcgccgccctccgcctcctccactcccttccccccacctctccccccgctccaacccgcatctccggcctcctgaccaaccgcctcagactcattgaccacgacgatgacctcagaattcgcgacggcgccagggctatgtttctcgccaggacaatgcgggacgctcgggacgacgacgccgttttggaggaggctgtgctgtgcctggtcctgaccaacgccgtcgaggtccaggataacaccggccgcaccctcggaattgcagtgtacgattcctgcttctcttggatcaaccacagctgttctcccaatgcctgctaccgctttctgctgtgctcgccgtcgccgccgcagtgcgccgagacgccgctgcgtattgtccccgccggccaagtaacgtcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SET

Protein Analysis

243

Amino Acids

26.74

Weight (kDa)

5.53

Isoelectric Point (pI)

64.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43245 AT1G43245
fragaria_vesca	FvH4_2g13430
malus_domestica	MD05G1027900.v1.1
prunus_persica	Prupe.8G033600_v2.0.a1 Prupe.8G033600_v2.0.a1
pyrus_communis	pycom05g02000
rosa_chinensis	RchiOBHm_Chr5g0050861 RchiOBHm_Chr6g0275051
rosa_laevigata	RLG00000013502
rosa_multiflora	Rmu_sc0000181.1_g000001 Rmu_sc0000447.1_g000003 Rmu_sc0020326.1_g000001
rosa_roxburghii	Rroxscaffold_7G00193730
rosa_rugosa	Rorug05G0264900.1 Rorug06G0087100 Rorug06G0087100
rosa_samantha	Rh5AG336700 Rh5BG346300 Rh5CG373900 Rh5CG374000 Rh5DG359200 Rh6AG202000 Rh6BG205500 Rh6CG207300 Rh6DG197300
rosa_wichuraiana	Rw6G017560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	452
AccBSI	CCGCTC	1 cut(s)	374
AccII	CGCG	2 cut(s)	327, 447
AclWI	GGATC	1 cut(s)	623
AcoI	YGGCCR	2 cut(s)	571, 715
AcsI	RAATTY	1 cut(s)	441
AcyI	GRCGYC	3 cut(s)	453, 504, 692
AfaI	GTAC	1 cut(s)	596
AjnI	CCWGG	4 cut(s)	455, 473, 531, 558
AluBI	AGCT	1 cut(s)	627
AluI	AGCT	1 cut(s)	627
Alw21I	GWGCWC	1 cut(s)	665
Alw26I	GTCTC	1 cut(s)	683
AlwI	GGATC	1 cut(s)	623
Ama87I	CYCGRG	1 cut(s)	492
AoxI	GGCC	3 cut(s)	391, 571, 715
ApeKI	GCWGC	1 cut(s)	697
ApoI	RAATTY	1 cut(s)	441
AspLEI	GCGC	4 cut(s)	254, 329, 455, 686
AspS9I	GGNCC	2 cut(s)	535, 556
AvaI	CYCGRG	1 cut(s)	492
AvaII	GGWCC	2 cut(s)	535, 556
BanI	GGYRCC	1 cut(s)	452
Bbv12I	GWGCWC	1 cut(s)	665
BbvI	GCAGC	1 cut(s)	684
BccI	CCATC	2 cut(s)	7, 70
BceAI	ACGGC	5 cut(s)	322, 466, 491, 533, 652
BciT130I	CCWGG	4 cut(s)	457, 475, 533, 560
BcoDI	GTCTC	1 cut(s)	683
BfoI	RGCGCY	2 cut(s)	255, 456
BisI	GCNGC	6 cut(s)	330, 574, 674, 677, 695, 698
BlsI	GCNGC	6 cut(s)	331, 575, 675, 678, 696, 699
Bme1390I	CCNGG	4 cut(s)	457, 475, 533, 560
Bme18I	GGWCC	2 cut(s)	535, 556
BmeT110I	CYCGRG	1 cut(s)	492
BmgT120I	GGNCC	2 cut(s)	535, 556
BmiI	GGNNCC	1 cut(s)	454
BmrFI	CCNGG	4 cut(s)	457, 475, 533, 560
BmsI	GCATC	1 cut(s)	393
BpmI	CTGGAG	1 cut(s)	232
BsaHI	GRCGYC	3 cut(s)	453, 504, 692
BsaJI	CCNNGG	3 cut(s)	304, 456, 580
BsaXI	ACNNNNNCTCC	4 cut(s)	191, 221, 296, 326
Bse118I	RCCGGY	2 cut(s)	569, 713
BseBI	CCWGG	4 cut(s)	457, 475, 533, 560
BseDI	CCNNGG	3 cut(s)	304, 456, 580
BseMII	CTCAG	2 cut(s)	424, 451
BseRI	GAGGAG	9 cut(s)	47, 63, 97, 132, 147, 266, 304, 332, 530
BseX3I	CGGCCG	1 cut(s)	571
BseXI	GCAGC	1 cut(s)	684
Bsh1236I	CGCG	2 cut(s)	327, 447
Bsh1285I	CGRYCG	1 cut(s)	574
BshFI	GGCC	3 cut(s)	393, 573, 717
BshNI	GGYRCC	1 cut(s)	452
BsiEI	CGRYCG	1 cut(s)	574
BsiHKAI	GWGCWC	1 cut(s)	665
BsiHKCI	CYCGRG	1 cut(s)	492
BsiSI	CCGG	3 cut(s)	390, 570, 714
BslFI	GGGAC	3 cut(s)	500, 509, 692
BsmAI	GTCTC	1 cut(s)	683
BsmBI	CGTCTC	1 cut(s)	683
BsmFI	GGGAC	3 cut(s)	500, 509, 692
BsnI	GGCC	3 cut(s)	393, 573, 717
BsoBI	CYCGRG	1 cut(s)	492
Bsp1286I	GDGCHC	1 cut(s)	665
Bsp143I	GATC	1 cut(s)	615
Bsp68I	TCGCGA	1 cut(s)	447
BspANI	GGCC	3 cut(s)	393, 573, 717
BspCNI	CTCAG	2 cut(s)	423, 450
BspFNI	CGCG	2 cut(s)	327, 447
BspLI	GGNNCC	1 cut(s)	454
BspPI	GGATC	1 cut(s)	623
BspQI	GCTCTTC	1 cut(s)	124
BspT107I	GGYRCC	1 cut(s)	452
BsrBI	CCGCTC	1 cut(s)	374
BsrFI	RCCGGY	2 cut(s)	569, 713
BssAI	RCCGGY	2 cut(s)	569, 713
BssECI	CCNNGG	3 cut(s)	304, 456, 580
BssMI	GATC	1 cut(s)	615
BssNI	GRCGYC	3 cut(s)	453, 504, 692
Bst2UI	CCWGG	4 cut(s)	457, 475, 533, 560
Bst6I	CTCTTC	2 cut(s)	24, 124
BstACI	GRCGYC	3 cut(s)	453, 504, 692
BstC8I	GCNNGC	3 cut(s)	643, 665, 715
BstDEI	CTNAG	2 cut(s)	410, 437
BstDSI	CCRYGG	1 cut(s)	304
BstFNI	CGCG	2 cut(s)	327, 447
BstH2I	RGCGCY	2 cut(s)	255, 456
BstHHI	GCGC	4 cut(s)	254, 329, 455, 686
BstKTI	GATC	1 cut(s)	618
BstMAI	GTCTC	1 cut(s)	683
BstMBI	GATC	1 cut(s)	615
BstMCI	CGRYCG	1 cut(s)	574
BstMWI	GCNNNNNNNGC	5 cut(s)	123, 270, 390, 664, 673
BstNI	CCWGG	4 cut(s)	457, 475, 533, 560
BstSCI	CCNGG	4 cut(s)	455, 473, 531, 558
BstUI	CGCG	2 cut(s)	327, 447
BstV1I	GCAGC	1 cut(s)	684
BstZI	CGGCCG	1 cut(s)	571
BsuRI	GGCC	3 cut(s)	393, 573, 717
BtgI	CCRYGG	1 cut(s)	304
BtsI	GCAGTG	3 cut(s)	112, 597, 686
BtsIMutI	CAGTG	3 cut(s)	112, 597, 686
BtuMI	TCGCGA	1 cut(s)	447
Cac8I	GCNNGC	3 cut(s)	643, 665, 715
CfoI	GCGC	4 cut(s)	254, 329, 455, 686
Cfr10I	RCCGGY	2 cut(s)	569, 713
Cfr13I	GGNCC	2 cut(s)	535, 556
CseI	GACGC	3 cut(s)	497, 512, 700
Csp6I	GTAC	1 cut(s)	595
CviAII	CATG	1 cut(s)	194
CviJI	RGCY	8 cut(s)	26, 259, 393, 461, 521, 573, 627, 717
CviKI_1	RGCY	8 cut(s)	26, 259, 393, 461, 521, 573, 627, 717
CviQI	GTAC	1 cut(s)	595
DdeI	CTNAG	2 cut(s)	410, 437
DinI	GGCGCC	1 cut(s)	454
DpnI	GATC	1 cut(s)	617
DpnII	GATC	1 cut(s)	615
EaeI	YGGCCR	2 cut(s)	571, 715
EagI	CGGCCG	1 cut(s)	571
Eam1104I	CTCTTC	2 cut(s)	24, 124
EarI	CTCTTC	2 cut(s)	24, 124
EciI	GGCGGA	3 cut(s)	211, 260, 326
EclXI	CGGCCG	1 cut(s)	571
Eco47I	GGWCC	2 cut(s)	535, 556
Eco52I	CGGCCG	1 cut(s)	571
Eco88I	CYCGRG	1 cut(s)	492
EcoRI	GAATTC	1 cut(s)	441
EcoRII	CCWGG	4 cut(s)	455, 473, 531, 558
EgeI	GGCGCC	1 cut(s)	454
EheI	GGCGCC	1 cut(s)	454
Esp3I	CGTCTC	1 cut(s)	683
FaeI	CATG	1 cut(s)	197
FaiI	YATR	4 cut(s)	165, 195, 464, 730
FaqI	GGGAC	3 cut(s)	500, 509, 692
FatI	CATG	1 cut(s)	193
FauI	CCCGC	4 cut(s)	379, 389, 477, 718
Fnu4HI	GCNGC	6 cut(s)	330, 574, 674, 677, 695, 698
Fsp4HI	GCNGC	6 cut(s)	330, 574, 674, 677, 695, 698
GlaI	GCGC	4 cut(s)	253, 328, 454, 685
GluI	GCNGC	6 cut(s)	330, 574, 674, 677, 695, 698
GsuI	CTGGAG	1 cut(s)	232
HaeII	RGCGCY	2 cut(s)	255, 456
HaeIII	GGCC	3 cut(s)	393, 573, 717
HapII	CCGG	3 cut(s)	390, 570, 714
HgaI	GACGC	3 cut(s)	497, 512, 700
HhaI	GCGC	4 cut(s)	254, 329, 455, 686
Hin1I	GRCGYC	3 cut(s)	453, 504, 692
Hin1II	CATG	1 cut(s)	197
Hin6I	GCGC	4 cut(s)	252, 327, 453, 684
HinP1I	GCGC	4 cut(s)	252, 327, 453, 684
HinfI	GANTC	5 cut(s)	95, 230, 311, 414, 599
HpaII	CCGG	3 cut(s)	390, 570, 714
Hpy166II	GTNNAC	2 cut(s)	199, 595
Hpy188I	TCNGA	5 cut(s)	229, 319, 413, 440, 584
Hpy188III	TCNNGA	4 cut(s)	397, 446, 494, 538
Hpy8I	GTNNAC	2 cut(s)	199, 595
Hpy99I	CGWCG	6 cut(s)	431, 452, 503, 506, 554, 673
HpyAV	CCTTC	3 cut(s)	110, 275, 362
HpyCH4IV	ACGT	1 cut(s)	725
HpyCH4V	TGCA	1 cut(s)	590
HpyF10VI	GCNNNNNNNGC	5 cut(s)	123, 270, 390, 664, 673
HpyF3I	CTNAG	2 cut(s)	410, 437
HpySE526I	ACGT	1 cut(s)	725
Hsp92I	GRCGYC	3 cut(s)	453, 504, 692
Hsp92II	CATG	1 cut(s)	197
HspAI	GCGC	4 cut(s)	252, 327, 453, 684
KasI	GGCGCC	1 cut(s)	452
KroI	GCCGGC	1 cut(s)	713
KroNI	GCCGGC	1 cut(s)	715
Kzo9I	GATC	1 cut(s)	615
LguI	GCTCTTC	1 cut(s)	124
LmnI	GCTCC	3 cut(s)	212, 224, 379
Lsp1109I	GCAGC	1 cut(s)	684
LweI	GCATC	1 cut(s)	393
MaeII	ACGT	1 cut(s)	725
MaeIII	GTNAC	1 cut(s)	721
MalI	GATC	1 cut(s)	617
MbiI	CCGCTC	1 cut(s)	374
MboI	GATC	1 cut(s)	615
MboII	GAAGA	2 cut(s)	41, 111
MhlI	GDGCHC	1 cut(s)	665
MluCI	AATT	3 cut(s)	184, 441, 585
Mly113I	GGCGCC	1 cut(s)	453
MlyI	GAGTC	3 cut(s)	89, 305, 408
MmeI	TCCRAC	2 cut(s)	342, 401
MroNI	GCCGGC	1 cut(s)	713
MseI	TTAA	1 cut(s)	56
MslI	CAYNNNNRTG	1 cut(s)	429
MspA1I	CMGCKG	2 cut(s)	627, 697
MspI	CCGG	3 cut(s)	390, 570, 714
MspR9I	CCNGG	4 cut(s)	457, 475, 533, 560
MvaI	CCWGG	4 cut(s)	457, 475, 533, 560
MvnI	CGCG	2 cut(s)	327, 447
MwoI	GCNNNNNNNGC	5 cut(s)	123, 270, 390, 664, 673
NaeI	GCCGGC	1 cut(s)	715
NarI	GGCGCC	1 cut(s)	453
NdeII	GATC	1 cut(s)	615
NgoMIV	GCCGGC	1 cut(s)	713
NlaIII	CATG	1 cut(s)	197
NlaIV	GGNNCC	1 cut(s)	454
NmeAIII	GCCGAG	2 cut(s)	280, 712
NruI	TCGCGA	1 cut(s)	447
PciSI	GCTCTTC	1 cut(s)	124
PcsI	WCGNNNNNNNCGW	3 cut(s)	90, 495, 504
PdiI	GCCGGC	1 cut(s)	715
PfeI	GAWTC	2 cut(s)	230, 599
PfoI	TCCNGGA	1 cut(s)	558
PkrI	GCNGC	6 cut(s)	331, 575, 675, 678, 696, 699
PleI	GAGTC	3 cut(s)	89, 305, 408
PluTI	GGCGCC	1 cut(s)	456
PpsI	GAGTC	3 cut(s)	89, 305, 408
Psp6I	CCWGG	4 cut(s)	455, 473, 531, 558
PspGI	CCWGG	4 cut(s)	455, 473, 531, 558
PspN4I	GGNNCC	1 cut(s)	454
PspPI	GGNCC	2 cut(s)	535, 556
PvuII	CAGCTG	1 cut(s)	627
RruI	TCGCGA	1 cut(s)	447
RsaI	GTAC	1 cut(s)	596
RsaNI	GTAC	1 cut(s)	595
RseI	CAYNNNNRTG	1 cut(s)	429
SapI	GCTCTTC	1 cut(s)	124
SaqAI	TTAA	1 cut(s)	56
SatI	GCNGC	6 cut(s)	330, 574, 674, 677, 695, 698
Sau3AI	GATC	1 cut(s)	615
Sau96I	GGNCC	2 cut(s)	535, 556
SchI	GAGTC	3 cut(s)	89, 305, 408
ScrFI	CCNGG	4 cut(s)	457, 475, 533, 560
SduI	GDGCHC	1 cut(s)	665
SetI	ASST	9 cut(s)	151, 246, 299, 324, 365, 438, 558, 629, 728
SfaNI	GCATC	1 cut(s)	393
SfoI	GGCGCC	1 cut(s)	454
SinI	GGWCC	2 cut(s)	535, 556
SmiMI	CAYNNNNRTG	1 cut(s)	429
Sse9I	AATT	3 cut(s)	184, 441, 585
SspDI	GGCGCC	1 cut(s)	452
StyD4I	CCNGG	4 cut(s)	455, 473, 531, 558
TaiI	ACGT	1 cut(s)	728
TaqI	TCGA	1 cut(s)	552
TasI	AATT	3 cut(s)	184, 441, 585
TauI	GCSGC	5 cut(s)	332, 576, 676, 679, 697
TfiI	GAWTC	2 cut(s)	230, 599
Tru1I	TTAA	1 cut(s)	56
Tru9I	TTAA	1 cut(s)	56
TscAI	CASTG	3 cut(s)	119, 597, 686
TseI	GCWGC	1 cut(s)	697
TspRI	CASTG	3 cut(s)	119, 597, 686
VpaK11BI	GGWCC	2 cut(s)	535, 556
XapI	RAATTY	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.