MD05G1027900.v1.1

Protein SET DOMAIN GROUP

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0006147
Physical Location & Seq
Forward (+)
4535936 .. 4538975
3040 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1027900.v1.1.491

Sequence Viewer

Length: 2019 bp
ATGGAGGTGGAGATGGAGATGAGGGCCGGGGAAGAAATAGAGATAGGACAAGACATAACGCCACCGCTCCCTCCGCTTTCTTCCTCTCTCCACCACTCCCTCCTCTCATCTCACTGCTCTTCCTGCTTCTCCCCTCTCCCTCCCCAACCCTTCCCTCCCCTCTTTACTCCTACCTTTCCCAACACTCCCTCCTCCTACTACTGCTCCTCCCTCTGCTCCTCCGCCGATTCTCCCCTCCACGTCTCCAGCGCCGAGCCCTACCTTCTCCTGCTTCTCCAATCCCACCCCTCCGCCTACCCCAACGGCGACTCCTCCGACCTCCGCGCCGCCCTCCGCCTCCTCCAATCCCTTCCCGCCACCTCCCCCTACCCTCGCGTAGCCGGCCTCCTGACGAATCGCCACAAACTCCTCCACCACCACGACCATAGGGTTCGCGACGGCGCCAGAGCCATGTTCCTCGCCAGGAAGATGCGGGATGAATCTCCGAATTTCTCTATCGATGCGACTATTGCCAACGTTGCTCCGCACGACGCCGTATTGGAGGAGGCCGTGCTGTCATTGGTGCTAACGAACGCCGTGGAGGTGCAGGATAAGACCGGGCGCACCCTTGGAATTTCCGTCTACGGTCCCAGCTTCTGCTGGATCAACCACAGCTGCTCCCCGAATGCTTGCTACCGCTTTTCTTTGATGACACCGCCAACGCCACCTTGTTGGCCCGAAACGGCGCTGCTGCGCATTGTCCCCTTCGGCCGCTCCTCCGGTCGTGCCACACAAATTGAGAATGAAAGCCGAGGTTATGGTCCAAGAGTGACGGTTAGGAGCATCAAGAGAATCAAGAAAGGCGAAGAAGTGACTGTTACTTACACTGATTTGTTGCAGCCTAAGGCAATGAGGCAGTCAGAGCTATGGTCAAGGTATCGGTTTATCTGCTCTTGTACGCGATGTAGTGCATCACCCCTAACCTACGTGGATCAAGCTTTGGAGGAAATATTTGCAGTCAATTCCAACTCCTCCAGTTTGAGTTTAGAAATAAACTTCAATAGAGATAAGGCAACGCAATTGTTGAGTGTTTACTTTGATGATGCTATTGACGACTACCTGTCGAGTGGCGATCCTGAATCTTCTTGTGAGAGGCTTGAGCATGCGTTCACACAAGGACTCTCTGATATGCAATTAGATTGCAACGGAGAAACATCTCAGCTGAGATACTGGTTGCACCCATTAAATTACCTCTCCCTAAATGCCTACACAACATTGGCTTCAGCGTATAAAATCCGTGCAACTGACATGATAGCTTTATGTTCTAAAATGGATGATCATCTGTTAAAAGCTTTGAACTTAAGCAGGACTAGTGCAGCATACTCCTTACTACTTGCTGGTGCAACTCACCATCTGTTCCGCTCTGAATCGTCTCTAATTGTATCTGTTGCAAATTTCTGGACAAGCGCAGGGGAGTCATTGTTAACTCTTGCTAAAAGCTCAGTCTGGAGTGAGTTTGTCCACCGGGATCTGCCTGTGTCAAATCCATGTTCCACTGCAAGTTATAGATGTCCAAAATGCTCATTGATAGACAAATTTGAAGCTTGTTTATTCTATGGTCAAGTTCAACATGCAGATTTTGACGATGTCTCAAGTGAATTCATTGATTGCGTCTCTAACTTTACACAGAATGTTTGGAATATTTTGGCTCTCAGTTGCCAGTACCTTAGATTGATTAAGAGTCCTATTGATTTCAGTTGGCTTGGTACCACAAAAGATTCCAGTGTAGGGGAAGTTCTGATTCGGTCTAGTGGCACTAAAGCGGGTTCTTGTGGGACTGAGAGAAGCATTTCTGGAAGTGAAGCAGAGGGATACACAGCCCAGGTACGGATATGTATTTTTAAGCTCGGTGTCCATTGCTTACTATATGGAGGATATCTAGCGAGCATATGTTATGGTAATTCCCATTTGACCTGTTATGTTCGTAATATTTTAGATATGGAAGGGATATTATTGAATCCTTGTCATGAACCAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SET

Protein Analysis

673

Amino Acids

74.33

Weight (kDa)

5.93

Isoelectric Point (pI)

48.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 203 - 288 9.7e-07 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 734
Acc65I GGTACC 1 cut(s) 1745
AccB1I GGYRCC 2 cut(s) 440, 1745
AccBSI CCGCTC 3 cut(s) 67, 753, 1401
AccI GTMKAC 1 cut(s) 621
AccII CGCG 4 cut(s) 324, 375, 435, 940
AclI AACGTT 1 cut(s) 516
AclWI GGATC 4 cut(s) 650, 978, 1106, 1515
AcoI YGGCCR 1 cut(s) 748
AcsI RAATTY 5 cut(s) 487, 612, 1432, 1574, 1637
AcuI CTGAAG 1 cut(s) 1245
AcyI GRCGYC 2 cut(s) 441, 531
AfaI GTAC 4 cut(s) 937, 1703, 1747, 1866
AfiI CCNNNNNNNGG 2 cut(s) 1767, 1866
AflII CTTAAG 1 cut(s) 1339
AgsI TTSAA 5 cut(s) 1039, 1336, 1580, 1607, 1996
AhdI GACNNNNNGTC 1 cut(s) 1099
AhlI ACTAGT 1 cut(s) 1349
AjiI CACGTC 1 cut(s) 241
AjnI CCWGG 2 cut(s) 461, 1860
Alw26I GTCTC 4 cut(s) 247, 1416, 1633, 1657
AlwI GGATC 4 cut(s) 650, 978, 1106, 1515
AlwNI CAGNNNCTG 1 cut(s) 636
AoxI GGCC 5 cut(s) 24, 382, 546, 713, 748
ApeKI GCWGC 5 cut(s) 654, 727, 730, 877, 1355
ApoI RAATTY 5 cut(s) 487, 612, 1432, 1574, 1637
Asp700I GAANNNNTTC 1 cut(s) 1828
Asp718I GGTACC 1 cut(s) 1745
AspLEI GCGC 7 cut(s) 251, 326, 443, 603, 727, 735, 1448
AspS9I GGNCC 4 cut(s) 24, 626, 714, 800
AsuC2I CCSGG 3 cut(s) 28, 598, 1505
AsuHPI GGTGA 2 cut(s) 945, 1379
AvaII GGWCC 2 cut(s) 626, 800
AxyI CCTNAGG 1 cut(s) 882
BanI GGYRCC 2 cut(s) 440, 1745
BanII GRGCYC 1 cut(s) 258
BbvI GCAGC 5 cut(s) 641, 714, 717, 889, 1367
BccI CCATC 2 cut(s) 7, 1398
BceAI ACGGC 6 cut(s) 319, 454, 518, 533, 560, 738
BciT130I CCWGG 2 cut(s) 463, 1862
BciVI GTATCC 1 cut(s) 1844
BclI TGATCA 1 cut(s) 1315
BcnI CCSGG 3 cut(s) 28, 598, 1505
BcoDI GTCTC 4 cut(s) 247, 1416, 1633, 1657
BcuI ACTAGT 1 cut(s) 1349
BfaI CTAG 3 cut(s) 1350, 1788, 1919
BfoI RGCGCY 3 cut(s) 252, 444, 728
BfrI CTTAAG 1 cut(s) 1339
BfuI GTATCC 1 cut(s) 1844
BisI GCNGC 7 cut(s) 327, 655, 728, 731, 751, 878, 1356
BlsI GCNGC 7 cut(s) 328, 656, 729, 732, 752, 879, 1357
Bme1390I CCNGG 5 cut(s) 28, 463, 598, 1505, 1862
Bme18I GGWCC 2 cut(s) 626, 800
BmeRI GACNNNNNGTC 1 cut(s) 1099
BmgBI CACGTC 1 cut(s) 241
BmgT120I GGNCC 4 cut(s) 24, 626, 714, 800
BmiI GGNNCC 3 cut(s) 442, 628, 1747
BmrFI CCNGG 5 cut(s) 28, 463, 598, 1505, 1862
BmsI GCATC 5 cut(s) 459, 490, 831, 959, 1072
BpmI CTGGAG 3 cut(s) 229, 997, 1507
BpuEI CTTGAG 2 cut(s) 1157, 1615
BpuMI CCSGG 3 cut(s) 28, 598, 1505
Bsa29I ATCGAT 1 cut(s) 498
BsaAI YACGTR 1 cut(s) 967
BsaBI GATNNNNATC 1 cut(s) 1317
BsaHI GRCGYC 2 cut(s) 441, 531
BsaJI CCNNGG 5 cut(s) 27, 576, 607, 790, 1860
BsaWI WCCGGW 1 cut(s) 758
Bsc4I CCNNNNNNNGG 2 cut(s) 1767, 1866
Bse118I RCCGGY 1 cut(s) 380
Bse1I ACTGG 4 cut(s) 1014, 1214, 1699, 1761
Bse21I CCTNAGG 1 cut(s) 882
Bse3DI GCAATG 2 cut(s) 894, 1894
Bse8I GATNNNNATC 1 cut(s) 1317
BseBI CCWGG 2 cut(s) 463, 1862
BseCI ATCGAT 1 cut(s) 498
BseDI CCNNGG 5 cut(s) 27, 576, 607, 790, 1860
BseGI GGATG 2 cut(s) 481, 1318
BseJI GATNNNNATC 1 cut(s) 1317
BseLI CCNNNNNNNGG 2 cut(s) 1767, 1866
BseMI GCAATG 2 cut(s) 894, 1894
BseMII CTCAG 5 cut(s) 1193, 1211, 1494, 1705, 1809
BseNI ACTGG 4 cut(s) 1014, 1214, 1699, 1761
BseX3I CGGCCG 1 cut(s) 748
BseXI GCAGC 5 cut(s) 641, 714, 717, 889, 1367
BseYI CCCAGC 1 cut(s) 629
BsgI GTGCAG 2 cut(s) 605, 1374
Bsh1236I CGCG 4 cut(s) 324, 375, 435, 940
Bsh1285I CGRYCG 2 cut(s) 751, 763
BshFI GGCC 5 cut(s) 26, 384, 548, 715, 750
BshNI GGYRCC 2 cut(s) 440, 1745
BshVI ATCGAT 1 cut(s) 498
BsiEI CGRYCG 2 cut(s) 751, 763
BsiSI CCGG 5 cut(s) 27, 381, 597, 759, 1504
BslFI GGGAC 3 cut(s) 612, 725, 1828
BslI CCNNNNNNNGG 2 cut(s) 1767, 1866
BsmAI GTCTC 4 cut(s) 247, 1416, 1633, 1657
BsmBI CGTCTC 3 cut(s) 247, 1416, 1657
BsmFI GGGAC 3 cut(s) 612, 725, 1828
BsmI GAATGC 1 cut(s) 670
BsnI GGCC 5 cut(s) 26, 384, 548, 715, 750
Bsp1286I GDGCHC 1 cut(s) 258
Bsp143I GATC 5 cut(s) 642, 970, 1111, 1315, 1507
Bsp68I TCGCGA 1 cut(s) 435
BspANI GGCC 5 cut(s) 26, 384, 548, 715, 750
BspCNI CTCAG 5 cut(s) 1194, 1210, 1493, 1704, 1810
BspDI ATCGAT 1 cut(s) 498
BspFNI CGCG 4 cut(s) 324, 375, 435, 940
BspHI TCATGA 1 cut(s) 2005
BspLI GGNNCC 3 cut(s) 442, 628, 1747
BspPI GGATC 4 cut(s) 650, 978, 1106, 1515
BspQI GCTCTTC 1 cut(s) 124
BspT107I GGYRCC 2 cut(s) 440, 1745
BspTI CTTAAG 1 cut(s) 1339
BsrBI CCGCTC 3 cut(s) 67, 753, 1401
BsrDI GCAATG 2 cut(s) 894, 1894
BsrFI RCCGGY 1 cut(s) 380
BsrI ACTGG 4 cut(s) 1014, 1214, 1699, 1761
BssAI RCCGGY 1 cut(s) 380
BssECI CCNNGG 5 cut(s) 27, 576, 607, 790, 1860
BssMI GATC 5 cut(s) 642, 970, 1111, 1315, 1507
BssNI GRCGYC 2 cut(s) 441, 531
BssT1I CCWWGG 1 cut(s) 607
Bst2UI CCWGG 2 cut(s) 463, 1862
Bst4CI ACNGT 3 cut(s) 626, 814, 856
Bst6I CTCTTC 1 cut(s) 124
BstACI GRCGYC 2 cut(s) 441, 531
BstAFI CTTAAG 1 cut(s) 1339
BstBAI YACGTR 1 cut(s) 967
BstC8I GCNNGC 4 cut(s) 382, 670, 1143, 1924
BstDEI CTNAG 7 cut(s) 882, 1197, 1202, 1480, 1691, 1706, 1818
BstDSI CCRYGG 1 cut(s) 576
BstF5I GGATG 2 cut(s) 481, 1318
BstFNI CGCG 4 cut(s) 324, 375, 435, 940
BstH2I RGCGCY 3 cut(s) 252, 444, 728
BstHHI GCGC 7 cut(s) 251, 326, 443, 603, 727, 735, 1448
BstKTI GATC 5 cut(s) 645, 973, 1114, 1318, 1510
BstMAI GTCTC 4 cut(s) 247, 1416, 1633, 1657
BstMBI GATC 5 cut(s) 642, 970, 1111, 1315, 1507
BstMCI CGRYCG 2 cut(s) 751, 763
BstMWI GCNNNNNNNGC 6 cut(s) 73, 123, 381, 509, 518, 901
BstNI CCWGG 2 cut(s) 463, 1862
BstNSI RCATGY 2 cut(s) 1145, 1613
BstSCI CCNGG 5 cut(s) 26, 461, 596, 1503, 1860
BstUI CGCG 4 cut(s) 324, 375, 435, 940
BstV1I GCAGC 5 cut(s) 641, 714, 717, 889, 1367
BstX2I RGATCY 1 cut(s) 1507
BstXI CCANNNNNNTGG 1 cut(s) 711
BstYI RGATCY 1 cut(s) 1507
BstZI CGGCCG 1 cut(s) 748
Bsu15I ATCGAT 1 cut(s) 498
Bsu36I CCTNAGG 1 cut(s) 882
BsuI GTATCC 1 cut(s) 1844
BsuRI GGCC 5 cut(s) 26, 384, 548, 715, 750
BsuTUI ATCGAT 1 cut(s) 498
BtgI CCRYGG 1 cut(s) 576
BtgZI GCGATG 1 cut(s) 955
BtrI CACGTC 1 cut(s) 241
BtsCI GGATG 2 cut(s) 481, 1318
BtsI GCAGTG 2 cut(s) 112, 1533
BtsIMutI CAGTG 4 cut(s) 112, 864, 1533, 1768
BtuMI TCGCGA 1 cut(s) 435
Cac8I GCNNGC 4 cut(s) 382, 670, 1143, 1924
CaiI CAGNNNCTG 1 cut(s) 636
CciI TCATGA 1 cut(s) 2005
CfoI GCGC 7 cut(s) 251, 326, 443, 603, 727, 735, 1448
Cfr10I RCCGGY 1 cut(s) 380
Cfr13I GGNCC 4 cut(s) 24, 626, 714, 800
ClaI ATCGAT 1 cut(s) 498
CseI GACGC 2 cut(s) 539, 1639
Csp6I GTAC 4 cut(s) 936, 1702, 1746, 1865
CspCI CAANNNNNGTGG 2 cut(s) 757, 792
CviAII CATG 6 cut(s) 451, 1142, 1288, 1527, 1610, 2006
CviQI GTAC 4 cut(s) 936, 1702, 1746, 1865
DdeI CTNAG 7 cut(s) 882, 1197, 1202, 1480, 1691, 1706, 1818
DinI GGCGCC 1 cut(s) 442
DpnI GATC 5 cut(s) 644, 972, 1113, 1317, 1509
DpnII GATC 5 cut(s) 642, 970, 1111, 1315, 1507
DriI GACNNNNNGTC 1 cut(s) 1099
EaeI YGGCCR 1 cut(s) 748
EagI CGGCCG 1 cut(s) 748
Eam1104I CTCTTC 1 cut(s) 124
Eam1105I GACNNNNNGTC 1 cut(s) 1099
EarI CTCTTC 1 cut(s) 124
EciI GGCGGA 3 cut(s) 211, 280, 323
EclXI CGGCCG 1 cut(s) 748
Eco130I CCWWGG 1 cut(s) 607
Eco24I GRGCYC 1 cut(s) 258
Eco32I GATATC 1 cut(s) 1916
Eco47I GGWCC 2 cut(s) 626, 800
Eco52I CGGCCG 1 cut(s) 748
Eco57I CTGAAG 1 cut(s) 1245
Eco81I CCTNAGG 1 cut(s) 882
EcoRI GAATTC 1 cut(s) 1637
EcoRII CCWGG 2 cut(s) 461, 1860
EcoRV GATATC 1 cut(s) 1916
EcoT14I CCWWGG 1 cut(s) 607
EcoT38I GRGCYC 1 cut(s) 258
EgeI GGCGCC 1 cut(s) 442
EheI GGCGCC 1 cut(s) 442
ErhI CCWWGG 1 cut(s) 607
Esp3I CGTCTC 3 cut(s) 247, 1416, 1657
FaeI CATG 6 cut(s) 454, 1145, 1291, 1530, 1613, 2009
FaqI GGGAC 3 cut(s) 612, 725, 1828
FatI CATG 6 cut(s) 450, 1141, 1287, 1526, 1609, 2005
FauI CCCGC 3 cut(s) 361, 465, 1795
FauNDI CATATG 1 cut(s) 1928
FbaI TGATCA 1 cut(s) 1315
FblI GTMKAC 1 cut(s) 621
Fnu4HI GCNGC 7 cut(s) 327, 655, 728, 731, 751, 878, 1356
FokI GGATG 2 cut(s) 488, 1325
FriOI GRGCYC 1 cut(s) 258
Fsp4HI GCNGC 7 cut(s) 327, 655, 728, 731, 751, 878, 1356
FspBI CTAG 3 cut(s) 1350, 1788, 1919
FspI TGCGCA 1 cut(s) 734
GlaI GCGC 7 cut(s) 250, 325, 442, 602, 726, 734, 1447
GluI GCNGC 7 cut(s) 327, 655, 728, 731, 751, 878, 1356
GsaI CCCAGC 1 cut(s) 633
GsuI CTGGAG 3 cut(s) 229, 997, 1507
HaeII RGCGCY 3 cut(s) 252, 444, 728
HaeIII GGCC 5 cut(s) 26, 384, 548, 715, 750
HapII CCGG 5 cut(s) 27, 381, 597, 759, 1504
HgaI GACGC 2 cut(s) 539, 1639
HhaI GCGC 7 cut(s) 251, 326, 443, 603, 727, 735, 1448
Hin1I GRCGYC 2 cut(s) 441, 531
Hin1II CATG 6 cut(s) 454, 1145, 1291, 1530, 1613, 2009
Hin6I GCGC 7 cut(s) 249, 324, 441, 601, 725, 733, 1446
HinP1I GCGC 7 cut(s) 249, 324, 441, 601, 725, 733, 1446
HincII GTYRAC 1 cut(s) 1464
HindII GTYRAC 1 cut(s) 1464
HindIII AAGCTT 3 cut(s) 975, 1329, 1581
HpaI GTTAAC 1 cut(s) 1464
HpaII CCGG 5 cut(s) 27, 381, 597, 759, 1504
HphI GGTGA 2 cut(s) 945, 1379
Hpy166II GTNNAC 5 cut(s) 622, 1072, 1149, 1464, 1501
Hpy188I TCNGA 6 cut(s) 316, 486, 901, 1165, 1405, 1779
Hpy188III TCNNGA 9 cut(s) 388, 434, 826, 835, 1115, 1438, 1486, 1833, 2006
Hpy8I GTNNAC 5 cut(s) 622, 1072, 1149, 1464, 1501
Hpy99I CGWCG 2 cut(s) 440, 533
HpyAV CCTTC 5 cut(s) 160, 272, 359, 754, 1976
HpyCH4III ACNGT 3 cut(s) 626, 814, 856
HpyCH4IV ACGT 3 cut(s) 240, 516, 966
HpyF10VI GCNNNNNNNGC 6 cut(s) 73, 123, 381, 509, 518, 901
HpyF3I CTNAG 7 cut(s) 882, 1197, 1202, 1480, 1691, 1706, 1818
HpySE526I ACGT 3 cut(s) 240, 516, 966
Hsp92I GRCGYC 2 cut(s) 441, 531
Hsp92II CATG 6 cut(s) 454, 1145, 1291, 1530, 1613, 2009
HspAI GCGC 7 cut(s) 249, 324, 441, 601, 725, 733, 1446
KasI GGCGCC 1 cut(s) 440
KpnI GGTACC 1 cut(s) 1749
KroI GCCGGC 1 cut(s) 380
KroNI GCCGGC 1 cut(s) 382
Ksp22I TGATCA 1 cut(s) 1315
KspAI GTTAAC 1 cut(s) 1464
Kzo9I GATC 5 cut(s) 642, 970, 1111, 1315, 1507
LguI GCTCTTC 1 cut(s) 124
LmnI GCTCC 7 cut(s) 72, 209, 221, 526, 662, 758, 819
Lsp1109I GCAGC 5 cut(s) 641, 714, 717, 889, 1367
LweI GCATC 5 cut(s) 459, 490, 831, 959, 1072
MaeI CTAG 3 cut(s) 1350, 1788, 1919
MaeII ACGT 3 cut(s) 240, 516, 966
MaeIII GTNAC 3 cut(s) 808, 850, 856
MalI GATC 5 cut(s) 644, 972, 1113, 1317, 1509
MbiI CCGCTC 3 cut(s) 67, 753, 1401
MboI GATC 5 cut(s) 642, 970, 1111, 1315, 1507
MboII GAAGA 6 cut(s) 44, 72, 111, 478, 857, 1113
MfeI CAATTG 1 cut(s) 1058
MflI RGATCY 1 cut(s) 1507
MhlI GDGCHC 1 cut(s) 258
Mly113I GGCGCC 1 cut(s) 441
MlyI GAGTC 4 cut(s) 302, 1152, 1463, 1729
MmeI TCCRAC 2 cut(s) 339, 1029
MroNI GCCGGC 1 cut(s) 380
MroXI GAANNNNTTC 1 cut(s) 1828
MseI TTAA 6 cut(s) 1223, 1325, 1340, 1463, 1716, 1881
MspA1I CMGCKG 2 cut(s) 654, 1201
MspCI CTTAAG 1 cut(s) 1339
MspI CCGG 5 cut(s) 27, 381, 597, 759, 1504
MspR9I CCNGG 5 cut(s) 28, 463, 598, 1505, 1862
MunI CAATTG 1 cut(s) 1058
Mva1269I GAATGC 1 cut(s) 670
MvaI CCWGG 2 cut(s) 463, 1862
MvnI CGCG 4 cut(s) 324, 375, 435, 940
MwoI GCNNNNNNNGC 6 cut(s) 73, 123, 381, 509, 518, 901
NaeI GCCGGC 1 cut(s) 382
NarI GGCGCC 1 cut(s) 441
NciI CCSGG 3 cut(s) 28, 598, 1505
NdeI CATATG 1 cut(s) 1928
NdeII GATC 5 cut(s) 642, 970, 1111, 1315, 1507
NgoMIV GCCGGC 1 cut(s) 380
NlaIII CATG 6 cut(s) 454, 1145, 1291, 1530, 1613, 2009
NlaIV GGNNCC 3 cut(s) 442, 628, 1747
NmeAIII GCCGAG 2 cut(s) 277, 815
NmuCI GTSAC 2 cut(s) 808, 850
NruI TCGCGA 1 cut(s) 435
NsbI TGCGCA 1 cut(s) 734
NspI RCATGY 2 cut(s) 1145, 1613
PaeI GCATGC 1 cut(s) 1145
PagI TCATGA 1 cut(s) 2005
PciSI GCTCTTC 1 cut(s) 124
PctI GAATGC 1 cut(s) 670
PdiI GCCGGC 1 cut(s) 382
PdmI GAANNNNTTC 1 cut(s) 1828
PfeI GAWTC 9 cut(s) 227, 394, 479, 831, 1118, 1406, 1757, 1780, 1996
PflFI GACNNNGTC 1 cut(s) 1625
PkrI GCNGC 7 cut(s) 328, 656, 729, 732, 752, 879, 1357
PleI GAGTC 4 cut(s) 302, 1152, 1462, 1728
PluTI GGCGCC 1 cut(s) 444
PpsI GAGTC 4 cut(s) 302, 1152, 1462, 1728
Ppu21I YACGTR 1 cut(s) 967
Psp1406I AACGTT 1 cut(s) 516
Psp6I CCWGG 2 cut(s) 461, 1860
PspFI CCCAGC 1 cut(s) 629
PspGI CCWGG 2 cut(s) 461, 1860
PspN4I GGNNCC 3 cut(s) 442, 628, 1747
PspPI GGNCC 4 cut(s) 24, 626, 714, 800
PsrI GAACNNNNNNTAC 2 cut(s) 1758, 1790
PstNI CAGNNNCTG 1 cut(s) 636
PsuI RGATCY 1 cut(s) 1507
PsyI GACNNNGTC 1 cut(s) 1625
PvuII CAGCTG 2 cut(s) 654, 1201
RruI TCGCGA 1 cut(s) 435
RsaI GTAC 4 cut(s) 937, 1703, 1747, 1866
RsaNI GTAC 4 cut(s) 936, 1702, 1746, 1865
SapI GCTCTTC 1 cut(s) 124
SaqAI TTAA 6 cut(s) 1223, 1325, 1340, 1463, 1716, 1881
SatI GCNGC 7 cut(s) 327, 655, 728, 731, 751, 878, 1356
Sau3AI GATC 5 cut(s) 642, 970, 1111, 1315, 1507
Sau96I GGNCC 4 cut(s) 24, 626, 714, 800
SchI GAGTC 4 cut(s) 302, 1152, 1463, 1729
ScrFI CCNGG 5 cut(s) 28, 463, 598, 1505, 1862
SduI GDGCHC 1 cut(s) 258
SfaNI GCATC 5 cut(s) 459, 490, 831, 959, 1072
SfoI GGCGCC 1 cut(s) 442
SinI GGWCC 2 cut(s) 626, 800
SmlI CTYRAG 3 cut(s) 1136, 1339, 1630
SmoI CTYRAG 3 cut(s) 1136, 1339, 1630
SpeI ACTAGT 1 cut(s) 1349
SphI GCATGC 1 cut(s) 1145
SspDI GGCGCC 1 cut(s) 440
SspI AATATT 3 cut(s) 990, 1681, 1969
SspMI CTAG 3 cut(s) 1350, 1788, 1919
StyD4I CCNGG 5 cut(s) 26, 461, 596, 1503, 1860
StyI CCWWGG 1 cut(s) 607
TaaI ACNGT 3 cut(s) 626, 814, 856
TaiI ACGT 3 cut(s) 243, 519, 969
TaqI TCGA 2 cut(s) 498, 1103
TaqII GACCGA 1 cut(s) 1773
TauI GCSGC 2 cut(s) 329, 753
TfiI GAWTC 9 cut(s) 227, 394, 479, 831, 1118, 1406, 1757, 1780, 1996
Tru1I TTAA 6 cut(s) 1223, 1325, 1340, 1463, 1716, 1881
Tru9I TTAA 6 cut(s) 1223, 1325, 1340, 1463, 1716, 1881
TscAI CASTG 4 cut(s) 119, 871, 1540, 1768
TseFI GTSAC 2 cut(s) 808, 850
TseI GCWGC 5 cut(s) 654, 727, 730, 877, 1355
Tsp45I GTSAC 2 cut(s) 808, 850
TspDTI ATGAA 3 cut(s) 492, 798, 1630
TspGWI ACGGA 4 cut(s) 607, 1200, 1265, 1882
TspRI CASTG 4 cut(s) 119, 871, 1540, 1768
Tth111I GACNNNGTC 1 cut(s) 1625
Vha464I CTTAAG 1 cut(s) 1339
VpaK11BI GGWCC 2 cut(s) 626, 800
XapI RAATTY 5 cut(s) 487, 612, 1432, 1574, 1637
XceI RCATGY 2 cut(s) 1145, 1613
XmiI GTMKAC 1 cut(s) 621
XmnI GAANNNNTTC 1 cut(s) 1828
XspI CTAG 3 cut(s) 1350, 1788, 1919
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.