Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0006147

Physical Location & Seq

Genomic Coordinates Forward (+)

2294627 .. 2295676

Gene Structure 1050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g02000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGCGGAGATGGCGGAAATGGAGATGAGGGCCGGGGAAGACATAGAGATAGGACAAGACATAACGCCGCCGCTCCCTCCGCTTTCTTCCGCTCTCCATCACTCCCTCCTCTCATCTCACTGCTCTTCCTGCTTCTCCCCCCTCCCTCCCCAACCCTTCCCTCCCCTCTGTACCCCTACCTTTCCCAACACTCCCTCCTCCTACTACTGCTCCTCCCTCTGCTCCTCCGCCGATTCTCCCCTCCACGTCTCCAGCGCCGAGCCCTACCTTCTCCTGCTTCTCCAATCCCACCACTCCACCTATCCCAACGGCGACTCCTCCGACCTCCGCGCCGCCCTTCGCCTCCTCCAATCCCTTCCCGCCACCTCCCCCTACCCCCGCATCGCCGGCCTACTGACGAATCGCCACAAACTCCTCCACCACCACGACCATAGGGTTCGCGACGGCGCCAGAGCCATGTTCCTCGCCAGGAAGATGCGGGATGAATCTTCGAATTTCTCTATCGATGCGACTATTGCCGACGTTGCTCCGCACGACGCCGTATTGGAGGAGGCCGTGCTGTCATTGGTGCTAACGAACGCCGTGGAGGTGCAGGATAAGACCGGGCGCACCCTTGGAATTTCCGTCTACGGTCCCAGCTTCTGCTGGATCAATCACGGCTGTTCCCCGAATGCTTGCTACCGCTTTTCTTTGATGACACCGCCAACACCACCTTGTTGGCCCGAAACGCCGCTGCTGCGCATTGTCCCCTTCGGCCGCTCCTCCGGTCCTGCCACACAAAATGCCGAGGTTATGGTCCAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SET

Protein Analysis

269

Amino Acids

29.23

Weight (kDa)

5.87

Isoelectric Point (pI)

61.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43245 AT1G43245
fragaria_vesca	FvH4_2g13430
malus_domestica	MD05G1027900.v1.1
prunus_persica	Prupe.8G033600_v2.0.a1 Prupe.8G033600_v2.0.a1
pyrus_communis	pycom05g02000
rosa_chinensis	RchiOBHm_Chr5g0050861 RchiOBHm_Chr6g0275051
rosa_laevigata	RLG00000013502
rosa_multiflora	Rmu_sc0000181.1_g000001 Rmu_sc0000447.1_g000003 Rmu_sc0020326.1_g000001
rosa_roxburghii	Rroxscaffold_7G00193730
rosa_rugosa	Rorug05G0264900.1 Rorug06G0087100 Rorug06G0087100
rosa_samantha	Rh5AG336700 Rh5BG346300 Rh5CG373900 Rh5CG374000 Rh5DG359200 Rh6AG202000 Rh6BG205500 Rh6CG207300 Rh6DG197300
rosa_wichuraiana	Rw6G017560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	740
AccB1I	GGYRCC	1 cut(s)	446
AccBSI	CCGCTC	3 cut(s)	73, 92, 759
AccI	GTMKAC	1 cut(s)	627
AccII	CGCG	2 cut(s)	330, 441
AclWI	GGATC	1 cut(s)	656
AcoI	YGGCCR	1 cut(s)	754
AcsI	RAATTY	2 cut(s)	493, 618
AcyI	GRCGYC	2 cut(s)	447, 537
AfaI	GTAC	1 cut(s)	172
AjiI	CACGTC	1 cut(s)	247
AjnI	CCWGG	1 cut(s)	467
AluBI	AGCT	1 cut(s)	639
AluI	AGCT	1 cut(s)	639
Alw26I	GTCTC	1 cut(s)	253
AlwI	GGATC	1 cut(s)	656
AlwNI	CAGNNNCTG	1 cut(s)	642
AoxI	GGCC	5 cut(s)	30, 388, 552, 719, 754
ApeKI	GCWGC	2 cut(s)	733, 736
ApoI	RAATTY	2 cut(s)	493, 618
AspLEI	GCGC	5 cut(s)	257, 332, 449, 609, 741
AspS9I	GGNCC	5 cut(s)	30, 632, 720, 767, 796
AsuC2I	CCSGG	2 cut(s)	34, 604
AsuII	TTCGAA	1 cut(s)	491
AvaII	GGWCC	3 cut(s)	632, 767, 796
BanI	GGYRCC	1 cut(s)	446
BanII	GRGCYC	1 cut(s)	264
BbsI	GAAGAC	1 cut(s)	45
BbvI	GCAGC	2 cut(s)	720, 723
BccI	CCATC	2 cut(s)	4, 105
BceAI	ACGGC	6 cut(s)	325, 460, 524, 539, 566, 673
BciT130I	CCWGG	1 cut(s)	469
BcnI	CCSGG	2 cut(s)	34, 604
BcoDI	GTCTC	1 cut(s)	253
BfoI	RGCGCY	2 cut(s)	258, 450
BisI	GCNGC	7 cut(s)	68, 71, 333, 731, 734, 737, 757
BlsI	GCNGC	7 cut(s)	69, 72, 334, 732, 735, 738, 758
Bme1390I	CCNGG	3 cut(s)	34, 469, 604
Bme18I	GGWCC	3 cut(s)	632, 767, 796
BmgBI	CACGTC	1 cut(s)	247
BmgT120I	GGNCC	5 cut(s)	30, 632, 720, 767, 796
BmiI	GGNNCC	2 cut(s)	448, 634
BmrFI	CCNGG	3 cut(s)	34, 469, 604
BmsI	GCATC	3 cut(s)	390, 465, 496
BpiI	GAAGAC	1 cut(s)	45
BpmI	CTGGAG	1 cut(s)	235
Bpu14I	TTCGAA	1 cut(s)	491
BpuMI	CCSGG	2 cut(s)	34, 604
Bsa29I	ATCGAT	1 cut(s)	504
BsaHI	GRCGYC	2 cut(s)	447, 537
BsaJI	CCNNGG	4 cut(s)	33, 582, 613, 786
BsaWI	WCCGGW	1 cut(s)	764
BsaXI	ACNNNNNCTCC	8 cut(s)	179, 194, 197, 209, 224, 227, 299, 329
Bse118I	RCCGGY	1 cut(s)	386
BseBI	CCWGG	1 cut(s)	469
BseCI	ATCGAT	1 cut(s)	504
BseDI	CCNNGG	4 cut(s)	33, 582, 613, 786
BseGI	GGATG	1 cut(s)	487
BseRI	GAGGAG	9 cut(s)	98, 187, 202, 214, 307, 335, 404, 563, 751
BseX3I	CGGCCG	1 cut(s)	754
BseXI	GCAGC	2 cut(s)	720, 723
BseYI	CCCAGC	1 cut(s)	635
BsgI	GTGCAG	1 cut(s)	611
Bsh1236I	CGCG	2 cut(s)	330, 441
Bsh1285I	CGRYCG	1 cut(s)	757
BshFI	GGCC	5 cut(s)	32, 390, 554, 721, 756
BshNI	GGYRCC	1 cut(s)	446
BshVI	ATCGAT	1 cut(s)	504
BsiEI	CGRYCG	1 cut(s)	757
BsiSI	CCGG	4 cut(s)	33, 387, 603, 765
BslFI	GGGAC	2 cut(s)	618, 731
BsmAI	GTCTC	1 cut(s)	253
BsmBI	CGTCTC	1 cut(s)	253
BsmFI	GGGAC	2 cut(s)	618, 731
BsmI	GAATGC	1 cut(s)	676
BsnI	GGCC	5 cut(s)	32, 390, 554, 721, 756
Bsp119I	TTCGAA	1 cut(s)	491
Bsp1286I	GDGCHC	1 cut(s)	264
Bsp143I	GATC	1 cut(s)	648
Bsp68I	TCGCGA	1 cut(s)	441
BspANI	GGCC	5 cut(s)	32, 390, 554, 721, 756
BspDI	ATCGAT	1 cut(s)	504
BspFNI	CGCG	2 cut(s)	330, 441
BspLI	GGNNCC	2 cut(s)	448, 634
BspPI	GGATC	1 cut(s)	656
BspQI	GCTCTTC	1 cut(s)	130
BspT104I	TTCGAA	1 cut(s)	491
BspT107I	GGYRCC	1 cut(s)	446
BsrBI	CCGCTC	3 cut(s)	73, 92, 759
BsrFI	RCCGGY	1 cut(s)	386
BssAI	RCCGGY	1 cut(s)	386
BssECI	CCNNGG	4 cut(s)	33, 582, 613, 786
BssMI	GATC	1 cut(s)	648
BssNI	GRCGYC	2 cut(s)	447, 537
BssT1I	CCWWGG	1 cut(s)	613
Bst2UI	CCWGG	1 cut(s)	469
Bst4CI	ACNGT	1 cut(s)	632
Bst6I	CTCTTC	1 cut(s)	130
BstACI	GRCGYC	2 cut(s)	447, 537
BstBI	TTCGAA	1 cut(s)	491
BstC8I	GCNNGC	2 cut(s)	388, 676
BstDSI	CCRYGG	1 cut(s)	582
BstF5I	GGATG	1 cut(s)	487
BstFNI	CGCG	2 cut(s)	330, 441
BstH2I	RGCGCY	2 cut(s)	258, 450
BstHHI	GCGC	5 cut(s)	257, 332, 449, 609, 741
BstKTI	GATC	1 cut(s)	651
BstMAI	GTCTC	1 cut(s)	253
BstMBI	GATC	1 cut(s)	648
BstMCI	CGRYCG	1 cut(s)	757
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 79, 129, 387, 515, 524, 727, 736
BstNI	CCWGG	1 cut(s)	469
BstSCI	CCNGG	3 cut(s)	32, 467, 602
BstUI	CGCG	2 cut(s)	330, 441
BstV1I	GCAGC	2 cut(s)	720, 723
BstV2I	GAAGAC	1 cut(s)	45
BstXI	CCANNNNNNTGG	1 cut(s)	717
BstZI	CGGCCG	1 cut(s)	754
Bsu15I	ATCGAT	1 cut(s)	504
BsuRI	GGCC	5 cut(s)	32, 390, 554, 721, 756
BsuTUI	ATCGAT	1 cut(s)	504
BtgI	CCRYGG	1 cut(s)	582
BtgZI	GCGATG	1 cut(s)	367
BtrI	CACGTC	1 cut(s)	247
BtsCI	GGATG	1 cut(s)	487
BtsI	GCAGTG	1 cut(s)	118
BtsIMutI	CAGTG	1 cut(s)	118
BtuMI	TCGCGA	1 cut(s)	441
Cac8I	GCNNGC	2 cut(s)	388, 676
CaiI	CAGNNNCTG	1 cut(s)	642
CfoI	GCGC	5 cut(s)	257, 332, 449, 609, 741
Cfr10I	RCCGGY	1 cut(s)	386
Cfr13I	GGNCC	5 cut(s)	30, 632, 720, 767, 796
ClaI	ATCGAT	1 cut(s)	504
CseI	GACGC	1 cut(s)	545
Csp6I	GTAC	1 cut(s)	171
CviAII	CATG	1 cut(s)	457
CviJI	RGCY	9 cut(s)	32, 262, 390, 455, 554, 639, 660, 721, 756
CviKI_1	RGCY	9 cut(s)	32, 262, 390, 455, 554, 639, 660, 721, 756
CviQI	GTAC	1 cut(s)	171
DinI	GGCGCC	1 cut(s)	448
DpnI	GATC	1 cut(s)	650
DpnII	GATC	1 cut(s)	648
EaeI	YGGCCR	1 cut(s)	754
EagI	CGGCCG	1 cut(s)	754
Eam1104I	CTCTTC	1 cut(s)	130
EarI	CTCTTC	1 cut(s)	130
EciI	GGCGGA	3 cut(s)	20, 29, 217
EclXI	CGGCCG	1 cut(s)	754
Eco130I	CCWWGG	1 cut(s)	613
Eco24I	GRGCYC	1 cut(s)	264
Eco47I	GGWCC	3 cut(s)	632, 767, 796
Eco52I	CGGCCG	1 cut(s)	754
EcoRII	CCWGG	1 cut(s)	467
EcoT14I	CCWWGG	1 cut(s)	613
EcoT38I	GRGCYC	1 cut(s)	264
EgeI	GGCGCC	1 cut(s)	448
EheI	GGCGCC	1 cut(s)	448
ErhI	CCWWGG	1 cut(s)	613
Esp3I	CGTCTC	1 cut(s)	253
FaeI	CATG	1 cut(s)	460
FaiI	YATR	5 cut(s)	44, 62, 432, 458, 794
FaqI	GGGAC	2 cut(s)	618, 731
FatI	CATG	1 cut(s)	456
FauI	CCCGC	3 cut(s)	367, 386, 471
FblI	GTMKAC	1 cut(s)	627
Fnu4HI	GCNGC	7 cut(s)	68, 71, 333, 731, 734, 737, 757
FokI	GGATG	1 cut(s)	494
FriOI	GRGCYC	1 cut(s)	264
Fsp4HI	GCNGC	7 cut(s)	68, 71, 333, 731, 734, 737, 757
FspI	TGCGCA	1 cut(s)	740
GlaI	GCGC	5 cut(s)	256, 331, 448, 608, 740
GluI	GCNGC	7 cut(s)	68, 71, 333, 731, 734, 737, 757
GsaI	CCCAGC	1 cut(s)	639
GsuI	CTGGAG	1 cut(s)	235
HaeII	RGCGCY	2 cut(s)	258, 450
HaeIII	GGCC	5 cut(s)	32, 390, 554, 721, 756
HapII	CCGG	4 cut(s)	33, 387, 603, 765
HgaI	GACGC	1 cut(s)	545
HhaI	GCGC	5 cut(s)	257, 332, 449, 609, 741
Hin1I	GRCGYC	2 cut(s)	447, 537
Hin1II	CATG	1 cut(s)	460
Hin6I	GCGC	5 cut(s)	255, 330, 447, 607, 739
HinP1I	GCGC	5 cut(s)	255, 330, 447, 607, 739
HinfI	GANTC	4 cut(s)	233, 314, 400, 485
HpaII	CCGG	4 cut(s)	33, 387, 603, 765
Hpy166II	GTNNAC	1 cut(s)	628
Hpy188I	TCNGA	1 cut(s)	322
Hpy188III	TCNNGA	1 cut(s)	440
Hpy8I	GTNNAC	1 cut(s)	628
Hpy99I	CGWCG	3 cut(s)	446, 524, 539
HpyAV	CCTTC	5 cut(s)	166, 278, 347, 365, 760
HpyCH4III	ACNGT	1 cut(s)	632
HpyCH4IV	ACGT	2 cut(s)	246, 522
HpyCH4V	TGCA	1 cut(s)	592
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 79, 129, 387, 515, 524, 727, 736
HpySE526I	ACGT	2 cut(s)	246, 522
Hsp92I	GRCGYC	2 cut(s)	447, 537
Hsp92II	CATG	1 cut(s)	460
HspAI	GCGC	5 cut(s)	255, 330, 447, 607, 739
KasI	GGCGCC	1 cut(s)	446
KroI	GCCGGC	1 cut(s)	386
KroNI	GCCGGC	1 cut(s)	388
Kzo9I	GATC	1 cut(s)	648
LguI	GCTCTTC	1 cut(s)	130
LmnI	GCTCC	5 cut(s)	78, 215, 227, 532, 764
Lsp1109I	GCAGC	2 cut(s)	720, 723
LweI	GCATC	3 cut(s)	390, 465, 496
MaeII	ACGT	2 cut(s)	246, 522
MalI	GATC	1 cut(s)	650
MbiI	CCGCTC	3 cut(s)	73, 92, 759
MboI	GATC	1 cut(s)	648
MboII	GAAGA	5 cut(s)	50, 78, 117, 480, 484
MhlI	GDGCHC	1 cut(s)	264
MluCI	AATT	2 cut(s)	493, 618
Mly113I	GGCGCC	1 cut(s)	447
MlyI	GAGTC	1 cut(s)	308
MmeI	TCCRAC	1 cut(s)	345
MroNI	GCCGGC	1 cut(s)	386
MspA1I	CMGCKG	1 cut(s)	733
MspI	CCGG	4 cut(s)	33, 387, 603, 765
MspR9I	CCNGG	3 cut(s)	34, 469, 604
Mva1269I	GAATGC	1 cut(s)	676
MvaI	CCWGG	1 cut(s)	469
MvnI	CGCG	2 cut(s)	330, 441
MwoI	GCNNNNNNNGC	8 cut(s)	11, 79, 129, 387, 515, 524, 727, 736
NaeI	GCCGGC	1 cut(s)	388
NarI	GGCGCC	1 cut(s)	447
NciI	CCSGG	2 cut(s)	34, 604
NdeII	GATC	1 cut(s)	648
NgoMIV	GCCGGC	1 cut(s)	386
NlaIII	CATG	1 cut(s)	460
NlaIV	GGNNCC	2 cut(s)	448, 634
NmeAIII	GCCGAG	1 cut(s)	283
NruI	TCGCGA	1 cut(s)	441
NsbI	TGCGCA	1 cut(s)	740
NspV	TTCGAA	1 cut(s)	491
PciSI	GCTCTTC	1 cut(s)	130
PctI	GAATGC	1 cut(s)	676
PdiI	GCCGGC	1 cut(s)	388
PfeI	GAWTC	3 cut(s)	233, 400, 485
PkrI	GCNGC	7 cut(s)	69, 72, 334, 732, 735, 738, 758
PleI	GAGTC	1 cut(s)	308
PluTI	GGCGCC	1 cut(s)	450
PpsI	GAGTC	1 cut(s)	308
Psp6I	CCWGG	1 cut(s)	467
PspFI	CCCAGC	1 cut(s)	635
PspGI	CCWGG	1 cut(s)	467
PspN4I	GGNNCC	2 cut(s)	448, 634
PspPI	GGNCC	5 cut(s)	30, 632, 720, 767, 796
PstNI	CAGNNNCTG	1 cut(s)	642
RruI	TCGCGA	1 cut(s)	441
RsaI	GTAC	1 cut(s)	172
RsaNI	GTAC	1 cut(s)	171
SapI	GCTCTTC	1 cut(s)	130
SatI	GCNGC	7 cut(s)	68, 71, 333, 731, 734, 737, 757
Sau3AI	GATC	1 cut(s)	648
Sau96I	GGNCC	5 cut(s)	30, 632, 720, 767, 796
SchI	GAGTC	1 cut(s)	308
ScrFI	CCNGG	3 cut(s)	34, 469, 604
SduI	GDGCHC	1 cut(s)	264
SfaNI	GCATC	3 cut(s)	390, 465, 496
SfoI	GGCGCC	1 cut(s)	448
SfuI	TTCGAA	1 cut(s)	491
SinI	GGWCC	3 cut(s)	632, 767, 796
Sse9I	AATT	2 cut(s)	493, 618
SspDI	GGCGCC	1 cut(s)	446
StyD4I	CCNGG	3 cut(s)	32, 467, 602
StyI	CCWWGG	1 cut(s)	613
TaaI	ACNGT	1 cut(s)	632
TaiI	ACGT	2 cut(s)	249, 525
TaqI	TCGA	2 cut(s)	491, 504
TasI	AATT	2 cut(s)	493, 618
TauI	GCSGC	5 cut(s)	70, 73, 335, 733, 759
TfiI	GAWTC	3 cut(s)	233, 400, 485
TscAI	CASTG	1 cut(s)	125
TseI	GCWGC	2 cut(s)	733, 736
TspDTI	ATGAA	1 cut(s)	498
TspGWI	ACGGA	1 cut(s)	613
TspRI	CASTG	1 cut(s)	125
VpaK11BI	GGWCC	3 cut(s)	632, 767, 796
XapI	RAATTY	2 cut(s)	493, 618
XmiI	GTMKAC	1 cut(s)	627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.