Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0006147

Physical Location & Seq

Genomic Coordinates Reverse (-)

52780767 .. 52784063

Gene Structure 3297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG346300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGAGGCAGTCTGAATTATGGTCAAGGTATCGGTTTGTGTGCTCATGTAAGAGATGTAGTGCATCACCCCTAACTTATGTCGACCATGCTTTGGAGGATATCTATGCAGTCAATTTCAACTCTTCCAGATTGAGTTCAGATATTAGCTTCAATAGAGACAAGGCAACTGAAAGATTGACTGATTACATTGATGATGCTATAGCTGACTATCTGTCAATTGGTAATCCTGAATCTTCTTGTCAGAGGCTTGAGCAGGTACTCACACAAGGTCTTTCTGATAACCAGCAAGAGGGAAATGAAGAAAAATCAGAGTTAGCTTACTGGTTGAACCCATTGCATCACCTCTCTCTAAATGCGTACACCACATTGGCTTCAGCGTATAAAATCCTTGCAGATGACCAATTAACTTTATCTTCTTCAATAGAGTCAATAGGCAATCATGTAATGAAAGCTTTTGGCATGAGCAGGACAAGCGCGGCATACTCATTGTTGCTCGCAGGCGCAGCTCACCATCTCTTTAACTCTGAATCTTCCATAGTTGTAAATGTTGCACATTTCTGGACGATCGCTGGGGATTCCTTGCTAAATCTTGCTAAGAGCTCACTCTGGAGTGAGATAAACAGATGGGATTTGCCTGTGTCAGACCACTTGGAACTATACCGTATTGCAAAATACAAATGTCCAAAGTGCTCATTGATGGATAAATTTGAAACTTATTCATTTCATGATCCAGTGAAGCAAGCAGATTTTGAACATGCATCGAAGGAGTTTCTTGATTGTGTCACTAACTTAACACAAAAAGTTTGGTATTTTCTGGTTCAAGGTTGCCGCTATCTGGGACTTTGTAAGAATCCTATAGATTTTTGCTGGCTTGACACTTCAAAATATTCAAGTGAATGTGAAGTTCTTACTCAGTCTACTGGTACTAACTGTGGGAATAAAAGAAGTTTTTCTGGAAGTGAAGCAGAGGAAGACACCAACCAGTTAAGGATGTATGTTTTATATCTCGGTGTCCATTGCTTACTATATGGAGAATTTCTTGCGAGCATATGTTATGGTAGGTATTCCCATTTGACTTGTCATGTTCATAACATTTTAGATCGTGAAGAGAAATCATCAAATCCTTGTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SET

Protein Analysis

377

Amino Acids

42.85

Weight (kDa)

5.58

Isoelectric Point (pI)

40.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43245 AT1G43245
fragaria_vesca	FvH4_2g13430
malus_domestica	MD05G1027900.v1.1
prunus_persica	Prupe.8G033600_v2.0.a1 Prupe.8G033600_v2.0.a1
pyrus_communis	pycom05g02000
rosa_chinensis	RchiOBHm_Chr5g0050861 RchiOBHm_Chr6g0275051
rosa_laevigata	RLG00000013502
rosa_multiflora	Rmu_sc0000181.1_g000001 Rmu_sc0000447.1_g000003 Rmu_sc0020326.1_g000001
rosa_roxburghii	Rroxscaffold_7G00193730
rosa_rugosa	Rorug05G0264900.1 Rorug06G0087100 Rorug06G0087100
rosa_samantha	Rh5AG336700 Rh5BG346300 Rh5CG373900 Rh5CG374000 Rh5DG359200 Rh6AG202000 Rh6BG205500 Rh6CG207300 Rh6DG197300
rosa_wichuraiana	Rw6G017560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	244
AccB7I	CCANNNNNTGG	1 cut(s)	91
AccI	GTMKAC	2 cut(s)	81, 917
AccII	CGCG	1 cut(s)	476
AciI	CCGC	2 cut(s)	476, 829
AclWI	GGATC	1 cut(s)	722
AcsI	RAATTY	2 cut(s)	704, 1034
AcuI	CTGAAG	1 cut(s)	357
AfaI	GTAC	3 cut(s)	258, 359, 925
AfiI	CCNNNNNNNGG	3 cut(s)	91, 289, 835
AgsI	TTSAA	9 cut(s)	118, 151, 328, 420, 710, 752, 821, 882, 891
AhdI	GACNNNNNGTC	1 cut(s)	211
AluBI	AGCT	6 cut(s)	147, 203, 317, 452, 506, 600
AluI	AGCT	6 cut(s)	147, 203, 317, 452, 506, 600
Alw21I	GWGCWC	3 cut(s)	44, 602, 692
Alw26I	GTCTC	1 cut(s)	150
AlwI	GGATC	1 cut(s)	722
ApeKI	GCWGC	1 cut(s)	503
ApoI	RAATTY	2 cut(s)	704, 1034
Asp700I	GAANNNNTTC	1 cut(s)	949
AspLEI	GCGC	2 cut(s)	476, 503
AsuHPI	GGTGA	3 cut(s)	57, 332, 500
BanII	GRGCYC	1 cut(s)	602
BbsI	GAAGAC	1 cut(s)	978
Bbv12I	GWGCWC	3 cut(s)	44, 602, 692
BbvI	GCAGC	1 cut(s)	515
BccI	CCATC	3 cut(s)	519, 618, 691
BcoDI	GTCTC	1 cut(s)	150
BfmI	CTRYAG	2 cut(s)	198, 855
BfuAI	ACCTGC	1 cut(s)	244
BisI	GCNGC	3 cut(s)	477, 504, 829
BlsI	GCNGC	3 cut(s)	478, 505, 830
BmeRI	GACNNNNNGTC	1 cut(s)	211
BmsI	GCATC	4 cut(s)	71, 184, 346, 767
BpiI	GAAGAC	1 cut(s)	978
BpmI	CTGGAG	1 cut(s)	628
BpuEI	CTTGAG	1 cut(s)	269
Bsc4I	CCNNNNNNNGG	3 cut(s)	91, 289, 835
Bse1I	ACTGG	4 cut(s)	326, 731, 925, 982
Bse3DI	GCAATG	2 cut(s)	332, 1015
BseGI	GGATG	1 cut(s)	996
BseLI	CCNNNNNNNGG	3 cut(s)	91, 289, 835
BseMI	GCAATG	2 cut(s)	332, 1015
BseMII	CTCAG	1 cut(s)	926
BseNI	ACTGG	4 cut(s)	326, 731, 925, 982
BseXI	GCAGC	1 cut(s)	515
BseYI	CCCAGC	1 cut(s)	569
Bsh1236I	CGCG	1 cut(s)	476
Bsh1285I	CGRYCG	1 cut(s)	567
BsiEI	CGRYCG	1 cut(s)	567
BsiHKAI	GWGCWC	3 cut(s)	44, 602, 692
BslFI	GGGAC	1 cut(s)	852
BslI	CCNNNNNNNGG	3 cut(s)	91, 289, 835
BsmAI	GTCTC	1 cut(s)	150
BsmFI	GGGAC	1 cut(s)	852
Bsp1286I	GDGCHC	3 cut(s)	44, 602, 692
Bsp143I	GATC	3 cut(s)	564, 727, 1099
BspACI	CCGC	2 cut(s)	476, 829
BspCNI	CTCAG	1 cut(s)	925
BspFNI	CGCG	1 cut(s)	476
BspHI	TCATGA	1 cut(s)	724
BspMI	ACCTGC	1 cut(s)	244
BspPI	GGATC	1 cut(s)	722
BsrDI	GCAATG	2 cut(s)	332, 1015
BsrI	ACTGG	4 cut(s)	326, 731, 925, 982
BssMI	GATC	3 cut(s)	564, 727, 1099
Bst4CI	ACNGT	2 cut(s)	662, 932
Bst6I	CTCTTC	2 cut(s)	127, 1101
BstC8I	GCNNGC	5 cut(s)	495, 499, 741, 869, 1045
BstDEI	CTNAG	2 cut(s)	594, 912
BstF5I	GGATG	1 cut(s)	996
BstFNI	CGCG	1 cut(s)	476
BstHHI	GCGC	2 cut(s)	476, 503
BstKTI	GATC	3 cut(s)	567, 730, 1102
BstMAI	GTCTC	1 cut(s)	150
BstMBI	GATC	3 cut(s)	564, 727, 1099
BstMCI	CGRYCG	1 cut(s)	567
BstMWI	GCNNNNNNNGC	2 cut(s)	471, 503
BstNSI	RCATGY	1 cut(s)	758
BstSFI	CTRYAG	2 cut(s)	198, 855
BstUI	CGCG	1 cut(s)	476
BstV1I	GCAGC	1 cut(s)	515
BstV2I	GAAGAC	1 cut(s)	978
BtsCI	GGATG	1 cut(s)	996
BtsIMutI	CAGTG	1 cut(s)	738
BveI	ACCTGC	1 cut(s)	244
Cac8I	GCNNGC	5 cut(s)	495, 499, 741, 869, 1045
CciI	TCATGA	1 cut(s)	724
CfoI	GCGC	2 cut(s)	476, 503
Csp6I	GTAC	3 cut(s)	257, 358, 924
CviAII	CATG	7 cut(s)	45, 86, 440, 460, 725, 755, 1082
CviJI	RGCY	9 cut(s)	147, 203, 247, 317, 371, 452, 506, 600, 871
CviKI_1	RGCY	9 cut(s)	147, 203, 247, 317, 371, 452, 506, 600, 871
CviQI	GTAC	3 cut(s)	257, 358, 924
DdeI	CTNAG	2 cut(s)	594, 912
DpnI	GATC	3 cut(s)	566, 729, 1101
DpnII	GATC	3 cut(s)	564, 727, 1099
DriI	GACNNNNNGTC	1 cut(s)	211
Eam1104I	CTCTTC	2 cut(s)	127, 1101
Eam1105I	GACNNNNNGTC	1 cut(s)	211
EarI	CTCTTC	2 cut(s)	127, 1101
Ecl136II	GAGCTC	1 cut(s)	600
Eco24I	GRGCYC	1 cut(s)	602
Eco32I	GATATC	1 cut(s)	100
Eco53kI	GAGCTC	1 cut(s)	600
Eco57I	CTGAAG	1 cut(s)	357
EcoICRI	GAGCTC	1 cut(s)	600
EcoRV	GATATC	1 cut(s)	100
EcoT22I	ATGCAT	1 cut(s)	760
EcoT38I	GRGCYC	1 cut(s)	602
FaeI	CATG	7 cut(s)	48, 89, 443, 463, 728, 758, 1085
FaqI	GGGAC	1 cut(s)	852
FatI	CATG	7 cut(s)	44, 85, 439, 459, 724, 754, 1081
FauNDI	CATATG	1 cut(s)	1049
FblI	GTMKAC	2 cut(s)	81, 917
Fnu4HI	GCNGC	3 cut(s)	477, 504, 829
FokI	GGATG	1 cut(s)	1003
FriOI	GRGCYC	1 cut(s)	602
Fsp4HI	GCNGC	3 cut(s)	477, 504, 829
GlaI	GCGC	2 cut(s)	475, 502
GluI	GCNGC	3 cut(s)	477, 504, 829
GsaI	CCCAGC	1 cut(s)	573
GsuI	CTGGAG	1 cut(s)	628
HhaI	GCGC	2 cut(s)	476, 503
Hin1II	CATG	7 cut(s)	48, 89, 443, 463, 728, 758, 1085
Hin6I	GCGC	2 cut(s)	474, 501
HinP1I	GCGC	2 cut(s)	474, 501
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HindIII	AAGCTT	1 cut(s)	450
HinfI	GANTC	5 cut(s)	230, 425, 527, 575, 850
HphI	GGTGA	3 cut(s)	57, 332, 500
Hpy166II	GTNNAC	3 cut(s)	82, 360, 918
Hpy188I	TCNGA	7 cut(s)	13, 139, 243, 277, 310, 526, 643
Hpy188III	TCNNGA	8 cut(s)	126, 227, 559, 607, 725, 773, 954, 1103
Hpy8I	GTNNAC	3 cut(s)	82, 360, 918
HpyAV	CCTTC	1 cut(s)	757
HpyCH4III	ACNGT	2 cut(s)	662, 932
HpyCH4V	TGCA	7 cut(s)	62, 107, 337, 392, 551, 668, 758
HpyF10VI	GCNNNNNNNGC	2 cut(s)	471, 503
HpyF3I	CTNAG	2 cut(s)	594, 912
Hsp92II	CATG	7 cut(s)	48, 89, 443, 463, 728, 758, 1085
HspAI	GCGC	2 cut(s)	474, 501
Kzo9I	GATC	3 cut(s)	564, 727, 1099
Lsp1109I	GCAGC	1 cut(s)	515
LweI	GCATC	4 cut(s)	71, 184, 346, 767
MaeIII	GTNAC	1 cut(s)	781
MalI	GATC	3 cut(s)	566, 729, 1101
MboI	GATC	3 cut(s)	564, 727, 1099
MboII	GAAGA	8 cut(s)	114, 225, 311, 405, 408, 522, 983, 1118
MfeI	CAATTG	1 cut(s)	216
MhlI	GDGCHC	3 cut(s)	44, 602, 692
MluCI	AATT	6 cut(s)	14, 112, 216, 401, 704, 1034
MlyI	GAGTC	1 cut(s)	434
MnlI	CCTC	5 cut(s)	88, 237, 283, 353, 961
Mph1103I	ATGCAT	1 cut(s)	760
MroXI	GAANNNNTTC	1 cut(s)	949
MseI	TTAA	4 cut(s)	404, 519, 791, 986
MunI	CAATTG	1 cut(s)	216
MvnI	CGCG	1 cut(s)	476
MwoI	GCNNNNNNNGC	2 cut(s)	471, 503
NdeI	CATATG	1 cut(s)	1049
NdeII	GATC	3 cut(s)	564, 727, 1099
NlaIII	CATG	7 cut(s)	48, 89, 443, 463, 728, 758, 1085
NmuCI	GTSAC	1 cut(s)	781
NsiI	ATGCAT	1 cut(s)	760
NspI	RCATGY	1 cut(s)	758
PagI	TCATGA	1 cut(s)	724
PdmI	GAANNNNTTC	1 cut(s)	949
PfeI	GAWTC	4 cut(s)	230, 527, 575, 850
PflMI	CCANNNNNTGG	1 cut(s)	91
PkrI	GCNGC	3 cut(s)	478, 505, 830
Ple19I	CGATCG	1 cut(s)	567
PleI	GAGTC	1 cut(s)	433
PpsI	GAGTC	1 cut(s)	433
Psp124BI	GAGCTC	1 cut(s)	602
PspFI	CCCAGC	1 cut(s)	569
PvuI	CGATCG	1 cut(s)	567
RsaI	GTAC	3 cut(s)	258, 359, 925
RsaNI	GTAC	3 cut(s)	257, 358, 924
SacI	GAGCTC	1 cut(s)	602
SalI	GTCGAC	1 cut(s)	80
SaqAI	TTAA	4 cut(s)	404, 519, 791, 986
SatI	GCNGC	3 cut(s)	477, 504, 829
Sau3AI	GATC	3 cut(s)	564, 727, 1099
SchI	GAGTC	1 cut(s)	434
SduI	GDGCHC	3 cut(s)	44, 602, 692
SfaNI	GCATC	4 cut(s)	71, 184, 346, 767
SfcI	CTRYAG	2 cut(s)	198, 855
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	6 cut(s)	14, 112, 216, 401, 704, 1034
SsiI	CCGC	2 cut(s)	476, 829
SspI	AATATT	1 cut(s)	887
SstI	GAGCTC	1 cut(s)	602
TaaI	ACNGT	2 cut(s)	662, 932
TaqI	TCGA	2 cut(s)	81, 761
TasI	AATT	6 cut(s)	14, 112, 216, 401, 704, 1034
TauI	GCSGC	2 cut(s)	479, 831
TfiI	GAWTC	4 cut(s)	230, 527, 575, 850
Tru1I	TTAA	4 cut(s)	404, 519, 791, 986
Tru9I	TTAA	4 cut(s)	404, 519, 791, 986
TscAI	CASTG	1 cut(s)	738
TseFI	GTSAC	1 cut(s)	781
TseI	GCWGC	1 cut(s)	503
Tsp45I	GTSAC	1 cut(s)	781
TspDTI	ATGAA	5 cut(s)	312, 461, 708, 713, 1076
TspRI	CASTG	1 cut(s)	738
Van91I	CCANNNNNTGG	1 cut(s)	91
XapI	RAATTY	2 cut(s)	704, 1034
XceI	RCATGY	1 cut(s)	758
XmiI	GTMKAC	2 cut(s)	81, 917
XmnI	GAANNNNTTC	1 cut(s)	949
Zsp2I	ATGCAT	1 cut(s)	760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.