AT1G45207

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0003813
Physical Location & Seq
Reverse (-)
17130350 .. 17133809
3460 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G45207.2

Sequence Viewer

Length: 1668 bp
ATGCCGTCGGAGTCATCGTACAAAGTCCACCGTCCGGCGAAATCCGGAGGATCTCGACGAGACTCAAGCCCCGACTCAATAATCTTCACACCTGAATCTAATCTCAGTCTCTTCTCCTCCGCTTCCGTCAGCGTCGATCGTTGCTCTTCCACCTCCGACGCTCACGACCGGGACGACTCTCTCATCTCCGGTCCCTCTCTGGAGCGAGATCAGAGGGTAAGTTCGAGCTGTAAAGATCTAGATCTAGACAAGCGTGGTACAGGGTGGAAGAATAGTTGTAACTCTAGAAAATCAAATAAAGTAAAAGCAGCTTGGAAAGAGGAGTTTGAGGTTAAAAAAGATGATGAAAGCCAGAATCTTGATTCAGCTAGGAGTTCTTTCTCTGTAGCTCTTAGAGAATGTCAGGAACGAAGATCTAGATCTGAAGCGCTGGCGAAAAAGTTAGATTACCAAAGGACTGTTTCGTTGGATCTTAGTAATGTAACCTCTACGTCTCCAAGAGTGGTAAATGTGAAGAGAGCTTCAGTTTCAACTAATAAATCGAGTGTGTTTCCTAGTCCTGGTACTCCGACTTATCTACATAGTATGCAAAAGGGTTGGAGTTCAGAGAGAGTACCTTTACGTTCAAACGGAGGAAGAAGTCCGCCAAATGCTGGGTTTTTACCTTTGTATAGTGGTAGAACGGTTCCTTCTAAGTGGGAAGATGCGGAGAGATGGATAGTTAGTCCTCTTGCTAAGGAAGGAGCTGCCCGTACTTCATTTGGAGCATCGCATGAAAGGCGACCTAAAGCAAAGAGTGGTCCATTAGGTCCTCCAGGATTTGCATATTATTCGTTGTATTCCCCTGCAGTTCCTATGGTTCATGGTGGAAACATGGGAGGCTTAACAGCAAGCTCTCCGTTTTCAGCTGGTGTGTTGCCAGAAACTGTTTCTTCTAGGGGTTCCACTACAGCTGCCTTTCCTCAGCGAATCGATCCATCCATGGCGAGATCAGTTAGCATTCATGGCTGCTCTGAAACACTTGCATCTTCATCCCAAGATGACATCCATGAAAGTATGAAGGATGCTGCTACCGATGCTCAAGCTGTCTCAAGAAGGGATATGGCAACCCAGATGAGTCCCGAGGGAAGCATCCGGTTTTCCCCTGAGAGACAGTGTTCGTTCTCTCCCTCCTCTCCATCACCACTACCTATTTCGGAACTACTGAATGCTCATTCCAACCGAGCAGAAGTCAAGGACTTACAGGTTGATGAGAAGGTAACCGTAACTCGCTGGTCAAAGAAGCACAGAGGTCTATACCATGGAAATGGCTCAAAAATGCGAGATCACGTACATGGAAAAGCTACTAACCATGAAGATTTGACATGTGCGACAGAGGAAGCCAGAATTATATCTTGGGAAAATTTGCAGAAAGCTAAGGCCGAGGCAGCAATAAGAAAGCTAGAGAAATATTTCCCACAGATGAAGCTGGAAAAGAAAAGATCATCGTCGATGGAAAAGATTATGAGAAAAGTAAAATCAGCAGAGAAGAGAGCGGAGGAGATGAGGAGGTCGGTGTTAGACAATAGAGTCTCAACCGCATCTCATGGTAAGGCTTCATCATTCAAAAGAAGTGGGAAGAAGAAGATCCCTTCCCTTAGTGGTTGCTTCACCTGCCATGTATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

555

Amino Acids

60.91

Weight (kDa)

9.7

Isoelectric Point (pI)

64.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 458 - 539 4.3e-15 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1661
AasI GACNNNNNNGTC 1 cut(s) 1568
Acc36I ACCTGC 1 cut(s) 1661
AccB7I CCANNNNNTGG 1 cut(s) 653
AccBSI CCGCTC 1 cut(s) 1535
AccIII TCCGGA 1 cut(s) 44
AciI CCGC 5 cut(s) 120, 644, 707, 1535, 1578
AclWI GGATC 4 cut(s) 58, 477, 968, 1621
AcsI RAATTY 1 cut(s) 1402
AcuI CTGAAG 2 cut(s) 444, 507
AfaI GTAC 6 cut(s) 20, 259, 565, 615, 754, 1332
AfeI AGCGCT 1 cut(s) 429
AfiI CCNNNNNNNGG 3 cut(s) 34, 560, 653
AflIII ACRYGT 1 cut(s) 1364
AgsI TTSAA 3 cut(s) 531, 627, 1606
AjnI CCWGG 2 cut(s) 559, 814
AjuI GAANNNNNNNTTGG 2 cut(s) 1378, 1410
Alw26I GTCTC 6 cut(s) 54, 113, 498, 1093, 1144, 1576
AlwI GGATC 4 cut(s) 58, 477, 968, 1621
AlwNI CAGNNNCTG 1 cut(s) 926
Ama87I CYCGRG 1 cut(s) 1121
Aor13HI TCCGGA 1 cut(s) 44
Aor51HI AGCGCT 1 cut(s) 429
AoxI GGCC 1 cut(s) 1419
ApeKI GCWGC 6 cut(s) 308, 746, 953, 1008, 1067, 1427
ApoI RAATTY 1 cut(s) 1402
Asp700I GAANNNNTTC 1 cut(s) 1451
AspLEI GCGC 1 cut(s) 430
AspS9I GGNCC 3 cut(s) 191, 800, 809
AsuC2I CCSGG 1 cut(s) 170
AsuHPI GGTGA 2 cut(s) 1173, 1642
AvaI CYCGRG 1 cut(s) 1121
AvaII GGWCC 3 cut(s) 191, 800, 809
BbvCI CCTCAGC 1 cut(s) 963
BbvI GCAGC 6 cut(s) 320, 733, 940, 995, 1054, 1439
BccI CCATC 4 cut(s) 708, 985, 1186, 1486
BcgI CGANNNNNNTGC 2 cut(s) 813, 847
BciT130I CCWGG 2 cut(s) 561, 816
BcnI CCSGG 1 cut(s) 170
BcoDI GTCTC 6 cut(s) 54, 113, 498, 1093, 1144, 1576
BfaI CTAG 9 cut(s) 239, 245, 285, 369, 417, 555, 936, 1442, 1666
BfmI CTRYAG 3 cut(s) 384, 846, 948
BfoI RGCGCY 1 cut(s) 431
BfuAI ACCTGC 1 cut(s) 1661
BglII AGATCT 4 cut(s) 235, 241, 413, 419
BisI GCNGC 6 cut(s) 309, 747, 954, 1009, 1068, 1428
BlsI GCNGC 6 cut(s) 310, 748, 955, 1010, 1069, 1429
Bme1390I CCNGG 3 cut(s) 170, 561, 816
Bme18I GGWCC 3 cut(s) 191, 800, 809
BmeT110I CYCGRG 1 cut(s) 1121
BmgT120I GGNCC 3 cut(s) 191, 800, 809
BmiI GGNNCC 3 cut(s) 193, 687, 943
BmrFI CCNGG 3 cut(s) 170, 561, 816
BmsI GCATC 7 cut(s) 694, 776, 1034, 1054, 1066, 1140, 1589
BpmI CTGGAG 2 cut(s) 221, 798
Bpu10I CCTNAGC 3 cut(s) 735, 963, 1416
BpuEI CTTGAG 3 cut(s) 49, 1065, 1075
BpuMI CCSGG 1 cut(s) 170
Bsa29I ATCGAT 1 cut(s) 972
BsaAI YACGTR 1 cut(s) 1330
BsaBI GATNNNNATC 2 cut(s) 240, 418
BsaJI CCNNGG 4 cut(s) 981, 1122, 1300, 1422
BsaWI WCCGGW 3 cut(s) 44, 188, 1134
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bsc4I CCNNNNNNNGG 3 cut(s) 34, 560, 653
Bse8I GATNNNNATC 2 cut(s) 240, 418
BseAI TCCGGA 1 cut(s) 44
BseBI CCWGG 2 cut(s) 561, 816
BseCI ATCGAT 1 cut(s) 972
BseDI CCNNGG 4 cut(s) 981, 1122, 1300, 1422
BseGI GGATG 5 cut(s) 977, 1031, 1044, 1069, 1131
BseJI GATNNNNATC 2 cut(s) 240, 418
BseLI CCNNNNNNNGG 3 cut(s) 34, 560, 653
BseMII CTCAG 3 cut(s) 118, 977, 1137
BseRI GAGGAG 5 cut(s) 106, 335, 1162, 1553, 1561
BseXI GCAGC 6 cut(s) 320, 733, 940, 995, 1054, 1439
BseYI CCCAGC 1 cut(s) 653
Bsh1285I CGRYCG 2 cut(s) 139, 169
BshFI GGCC 1 cut(s) 1421
BshVI ATCGAT 1 cut(s) 972
BsiEI CGRYCG 2 cut(s) 139, 169
BsiHKCI CYCGRG 1 cut(s) 1121
BsiSI CCGG 5 cut(s) 35, 45, 169, 189, 1135
BslFI GGGAC 3 cut(s) 177, 185, 1104
BslI CCNNNNNNNGG 3 cut(s) 34, 560, 653
BsmAI GTCTC 6 cut(s) 54, 113, 498, 1093, 1144, 1576
BsmBI CGTCTC 1 cut(s) 498
BsmFI GGGAC 3 cut(s) 177, 185, 1104
BsmI GAATGC 2 cut(s) 999, 1213
BsnI GGCC 1 cut(s) 1421
BsoBI CYCGRG 1 cut(s) 1121
Bsp13I TCCGGA 1 cut(s) 44
Bsp19I CCATGG 2 cut(s) 981, 1300
BspACI CCGC 5 cut(s) 120, 644, 707, 1535, 1578
BspANI GGCC 1 cut(s) 1421
BspCNI CTCAG 3 cut(s) 117, 976, 1138
BspDI ATCGAT 1 cut(s) 972
BspEI TCCGGA 1 cut(s) 44
BspLI GGNNCC 3 cut(s) 193, 687, 943
BspMAI CTGCAG 1 cut(s) 850
BspMI ACCTGC 1 cut(s) 1661
BspPI GGATC 4 cut(s) 58, 477, 968, 1621
BspQI GCTCTTC 1 cut(s) 151
BsrBI CCGCTC 1 cut(s) 1535
BssECI CCNNGG 4 cut(s) 981, 1122, 1300, 1422
BssT1I CCWWGG 2 cut(s) 981, 1300
Bst2UI CCWGG 2 cut(s) 561, 816
Bst4CI ACNGT 6 cut(s) 32, 460, 685, 928, 1155, 1264
Bst6I CTCTTC 4 cut(s) 116, 151, 509, 1523
BstBAI YACGTR 1 cut(s) 1330
BstC8I GCNNGC 2 cut(s) 432, 892
BstDEI CTNAG 9 cut(s) 104, 392, 473, 693, 735, 963, 1146, 1416, 1637
BstDSI CCRYGG 2 cut(s) 981, 1300
BstEII GGTNACC 1 cut(s) 1258
BstF5I GGATG 5 cut(s) 977, 1031, 1044, 1069, 1131
BstH2I RGCGCY 1 cut(s) 431
BstHHI GCGC 1 cut(s) 430
BstMAI GTCTC 6 cut(s) 54, 113, 498, 1093, 1144, 1576
BstMCI CGRYCG 2 cut(s) 139, 169
BstMWI GCNNNNNNNGC 5 cut(s) 778, 1005, 1076, 1427, 1653
BstNI CCWGG 2 cut(s) 561, 816
BstNSI RCATGY 1 cut(s) 1368
BstPI GGTNACC 1 cut(s) 1258
BstSCI CCNGG 3 cut(s) 168, 559, 814
BstSFI CTRYAG 3 cut(s) 384, 846, 948
BstV1I GCAGC 6 cut(s) 320, 733, 940, 995, 1054, 1439
BstX2I RGATCY 7 cut(s) 50, 235, 241, 413, 419, 469, 1626
BstXI CCANNNNNNTGG 1 cut(s) 1307
BstYI RGATCY 7 cut(s) 50, 235, 241, 413, 419, 469, 1626
Bsu15I ATCGAT 1 cut(s) 972
BsuRI GGCC 1 cut(s) 1421
BsuTUI ATCGAT 1 cut(s) 972
BtgI CCRYGG 2 cut(s) 981, 1300
BtgZI GCGATG 1 cut(s) 753
BtsCI GGATG 5 cut(s) 977, 1031, 1044, 1069, 1131
BtsIMutI CAGTG 1 cut(s) 1160
BveI ACCTGC 1 cut(s) 1661
Cac8I GCNNGC 2 cut(s) 432, 892
CaiI CAGNNNCTG 1 cut(s) 926
CfoI GCGC 1 cut(s) 430
Cfr13I GGNCC 3 cut(s) 191, 800, 809
ClaI ATCGAT 1 cut(s) 972
CseI GACGC 2 cut(s) 121, 167
Csp6I GTAC 6 cut(s) 19, 258, 564, 614, 753, 1331
CspCI CAANNNNNGTGG 2 cut(s) 1594, 1629
CviQI GTAC 6 cut(s) 19, 258, 564, 614, 753, 1331
DdeI CTNAG 9 cut(s) 104, 392, 473, 693, 735, 963, 1146, 1416, 1637
DrdI GACNNNNNNGTC 1 cut(s) 1568
DseDI GACNNNNNNGTC 1 cut(s) 1568
Eam1104I CTCTTC 4 cut(s) 116, 151, 509, 1523
EarI CTCTTC 4 cut(s) 116, 151, 509, 1523
EciI GGCGGA 1 cut(s) 633
Eco130I CCWWGG 2 cut(s) 981, 1300
Eco47I GGWCC 3 cut(s) 191, 800, 809
Eco47III AGCGCT 1 cut(s) 429
Eco57I CTGAAG 2 cut(s) 444, 507
Eco88I CYCGRG 1 cut(s) 1121
Eco91I GGTNACC 1 cut(s) 1258
EcoO109I RGGNCCY 1 cut(s) 809
EcoO65I GGTNACC 1 cut(s) 1258
EcoRII CCWGG 2 cut(s) 559, 814
EcoT14I CCWWGG 2 cut(s) 981, 1300
ErhI CCWWGG 2 cut(s) 981, 1300
Esp3I CGTCTC 1 cut(s) 498
FaqI GGGAC 3 cut(s) 177, 185, 1104
Fnu4HI GCNGC 6 cut(s) 309, 747, 954, 1009, 1068, 1428
FokI GGATG 5 cut(s) 964, 1018, 1031, 1076, 1118
Fsp4HI GCNGC 6 cut(s) 309, 747, 954, 1009, 1068, 1428
FspBI CTAG 9 cut(s) 239, 245, 285, 369, 417, 555, 936, 1442, 1666
GlaI GCGC 1 cut(s) 429
GluI GCNGC 6 cut(s) 309, 747, 954, 1009, 1068, 1428
GsaI CCCAGC 1 cut(s) 657
GsuI CTGGAG 2 cut(s) 221, 798
HaeII RGCGCY 1 cut(s) 431
HaeIII GGCC 1 cut(s) 1421
HapII CCGG 5 cut(s) 35, 45, 169, 189, 1135
HgaI GACGC 2 cut(s) 121, 167
HhaI GCGC 1 cut(s) 430
Hin6I GCGC 1 cut(s) 428
HinP1I GCGC 1 cut(s) 428
HpaII CCGG 5 cut(s) 35, 45, 169, 189, 1135
HphI GGTGA 2 cut(s) 1173, 1642
Hpy166II GTNNAC 1 cut(s) 28
Hpy188I TCNGA 8 cut(s) 10, 157, 213, 424, 570, 607, 1015, 1198
Hpy8I GTNNAC 1 cut(s) 28
Hpy99I CGWCG 5 cut(s) 10, 60, 137, 161, 1492
HpyAV CCTTC 6 cut(s) 699, 734, 1054, 1089, 1249, 1641
HpyCH4III ACNGT 6 cut(s) 32, 460, 685, 928, 1155, 1264
HpyCH4IV ACGT 3 cut(s) 491, 622, 1329
HpyCH4V TGCA 5 cut(s) 589, 824, 848, 1025, 1408
HpyF10VI GCNNNNNNNGC 5 cut(s) 778, 1005, 1076, 1427, 1653
HpyF3I CTNAG 9 cut(s) 104, 392, 473, 693, 735, 963, 1146, 1416, 1637
HpySE526I ACGT 3 cut(s) 491, 622, 1329
HspAI GCGC 1 cut(s) 428
Kpn2I TCCGGA 1 cut(s) 44
LguI GCTCTTC 1 cut(s) 151
LmnI GCTCC 3 cut(s) 202, 743, 764
Lsp1109I GCAGC 6 cut(s) 320, 733, 940, 995, 1054, 1439
LweI GCATC 7 cut(s) 694, 776, 1034, 1054, 1066, 1140, 1589
MaeI CTAG 9 cut(s) 239, 245, 285, 369, 417, 555, 936, 1442, 1666
MaeII ACGT 3 cut(s) 491, 622, 1329
MaeIII GTNAC 4 cut(s) 278, 481, 1258, 1264
MbiI CCGCTC 1 cut(s) 1535
MflI RGATCY 7 cut(s) 50, 235, 241, 413, 419, 469, 1626
MluCI AATT 2 cut(s) 1386, 1402
MlyI GAGTC 6 cut(s) 20, 56, 68, 170, 1126, 1578
MmeI TCCRAC 5 cut(s) 180, 447, 578, 593, 1242
MroI TCCGGA 1 cut(s) 44
MroXI GAANNNNTTC 1 cut(s) 1451
MseI TTAA 2 cut(s) 333, 884
MslI CAYNNNNRTG 2 cut(s) 1305, 1332
MspA1I CMGCKG 2 cut(s) 908, 953
MspI CCGG 5 cut(s) 35, 45, 169, 189, 1135
MspR9I CCNGG 3 cut(s) 170, 561, 816
Mva1269I GAATGC 2 cut(s) 999, 1213
MvaI CCWGG 2 cut(s) 561, 816
MwoI GCNNNNNNNGC 5 cut(s) 778, 1005, 1076, 1427, 1653
NciI CCSGG 1 cut(s) 170
NcoI CCATGG 2 cut(s) 981, 1300
NlaIV GGNNCC 3 cut(s) 193, 687, 943
NmeAIII GCCGAG 1 cut(s) 1447
NspI RCATGY 1 cut(s) 1368
PaqCI CACCTGC 1 cut(s) 1661
PciI ACATGT 1 cut(s) 1364
PciSI GCTCTTC 1 cut(s) 151
PcsI WCGNNNNNNNCGW 2 cut(s) 14, 171
PctI GAATGC 2 cut(s) 999, 1213
PdmI GAANNNNTTC 1 cut(s) 1451
PfeI GAWTC 4 cut(s) 95, 355, 362, 969
PflMI CCANNNNNTGG 1 cut(s) 653
PfoI TCCNGGA 1 cut(s) 814
PkrI GCNGC 6 cut(s) 310, 748, 955, 1010, 1069, 1429
Ple19I CGATCG 1 cut(s) 139
PleI GAGTC 6 cut(s) 19, 56, 68, 170, 1125, 1577
PpsI GAGTC 6 cut(s) 19, 56, 68, 170, 1125, 1577
Ppu21I YACGTR 1 cut(s) 1330
PpuMI RGGWCCY 1 cut(s) 809
PscI ACATGT 1 cut(s) 1364
Psp5II RGGWCCY 1 cut(s) 809
Psp6I CCWGG 2 cut(s) 559, 814
PspEI GGTNACC 1 cut(s) 1258
PspFI CCCAGC 1 cut(s) 653
PspGI CCWGG 2 cut(s) 559, 814
PspN4I GGNNCC 3 cut(s) 193, 687, 943
PspPI GGNCC 3 cut(s) 191, 800, 809
PspPPI RGGWCCY 1 cut(s) 809
PstI CTGCAG 1 cut(s) 850
PstNI CAGNNNCTG 1 cut(s) 926
PsuI RGATCY 7 cut(s) 50, 235, 241, 413, 419, 469, 1626
PvuI CGATCG 1 cut(s) 139
PvuII CAGCTG 2 cut(s) 908, 953
RsaI GTAC 6 cut(s) 20, 259, 565, 615, 754, 1332
RsaNI GTAC 6 cut(s) 19, 258, 564, 614, 753, 1331
RseI CAYNNNNRTG 2 cut(s) 1305, 1332
SapI GCTCTTC 1 cut(s) 151
SaqAI TTAA 2 cut(s) 333, 884
SatI GCNGC 6 cut(s) 309, 747, 954, 1009, 1068, 1428
Sau96I GGNCC 3 cut(s) 191, 800, 809
SchI GAGTC 6 cut(s) 20, 56, 68, 170, 1126, 1578
ScrFI CCNGG 3 cut(s) 170, 561, 816
SfaNI GCATC 7 cut(s) 694, 776, 1034, 1054, 1066, 1140, 1589
SfcI CTRYAG 3 cut(s) 384, 846, 948
SinI GGWCC 3 cut(s) 191, 800, 809
SmiMI CAYNNNNRTG 2 cut(s) 1305, 1332
SmlI CTYRAG 3 cut(s) 64, 1080, 1090
SmoI CTYRAG 3 cut(s) 64, 1080, 1090
Sse9I AATT 2 cut(s) 1386, 1402
SsiI CCGC 5 cut(s) 120, 644, 707, 1535, 1578
SspI AATATT 1 cut(s) 1451
SspMI CTAG 9 cut(s) 239, 245, 285, 369, 417, 555, 936, 1442, 1666
StyD4I CCNGG 3 cut(s) 168, 559, 814
StyI CCWWGG 2 cut(s) 981, 1300
TaaI ACNGT 6 cut(s) 32, 460, 685, 928, 1155, 1264
TaiI ACGT 3 cut(s) 494, 625, 1332
TaqI TCGA 6 cut(s) 55, 135, 224, 542, 972, 1490
TasI AATT 2 cut(s) 1386, 1402
TfiI GAWTC 4 cut(s) 95, 355, 362, 969
Tru1I TTAA 2 cut(s) 333, 884
Tru9I TTAA 2 cut(s) 333, 884
TscAI CASTG 1 cut(s) 1160
TseI GCWGC 6 cut(s) 308, 746, 953, 1008, 1067, 1427
TspGWI ACGGA 3 cut(s) 115, 645, 888
TspRI CASTG 1 cut(s) 1160
Van91I CCANNNNNTGG 1 cut(s) 653
VpaK11BI GGWCC 3 cut(s) 191, 800, 809
XapI RAATTY 1 cut(s) 1402
XbaI TCTAGA 4 cut(s) 238, 244, 284, 416
XceI RCATGY 1 cut(s) 1368
XmnI GAANNNNTTC 1 cut(s) 1451
XspI CTAG 9 cut(s) 239, 245, 285, 369, 417, 555, 936, 1442, 1666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.