Rorug05G0563400

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003813
Physical Location & Seq
Forward (+)
75496358 .. 75498016
1659 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0563400.1

Sequence Viewer

Length: 1659 bp
ATGGCTTTTAAACTAATATATGCCTTATGCTTTCTACTTCTACTTCTACTACTACCATTTCCCACCCCTGCTCAAACTTACCATAATATATCGCTTAAATCGTCCCTTGTTGCAGGGGAAGATAGCAGTCCTTGGGCCTCACCATCCGGCGAATTTGCTTTTGGTTTCCAAAAAATTGGCAACAAGGGCTTCATACTAGCCATCTGGTTTGACAAAATACCTGAAAAAACTATTGTGTGGTCAGCCAATGGAAACAACTTGGCGGAAGAAGGATCAACTGTTGAACTCAACACATTTGGACAGTTAGTGCTCAATGATGCATCAGGAGAACAAAGGTTGCTATCTGACCATCACTCAACTCGAGGTACTAGAGTTGCCTATGCAGCCATGCTTGACTCAGGAAATTTTGTGCTGGCTGACCAAGAGTCAAACAATTTGTGGGAGAGTTTTGATCAACCAACTGATACAATCTTACCTACACAGACTCTCAGTATAGGTAGTGTTCTCTTTGCTCCCTATACTGCTACGAATTACTCAAATGGAAGATTCCAGTTAATACTAGAGTCTAATGGAAATGTTGTTCTATATACAACAAACTTTCCCTTGAATTCTACTAATTTCCCTTACCATACAAAAAAAACATCCACAAGCAGGCATTCTGTAGATGCAGATAATACCTTTCAGGTCATCTTCAACCAGTCTGGTTCTATTTATGTTACCGACAGAAATAGAACCTTGCGTAGTATACTGTCACCTAAGACAGTTTCAACGCAGGATTTTTACCAGAGAGCAACTCTTGACTATGATGGAGTATTTAGGCACTACATCTACCAGAAGAACAATGTCTCAAGTGTTTGGTCCACTTTCTTCTTCATGCCTGAAAATATCTGCTGGCAACTAACAGAAGAGACAGGCGGTGGCGCATGTGGTTTCAACAGCATATGTAGACAAGATGAGAAAGGACCAACTACTTGTGAGTGCCCCAAGAATTACATATTTATTGATCCAAATGATGAGAGGAAAGGATGCAAGCAAAACTTTCTTCCCCAAAGTTGTGATGAAGCCTCACCAGAAACTGATCTTTTTGGATTTCAAGTGATGCTAAACACAGATTGGCCTAATGGAGATTATGAGCATTTTCAGCCAGTAACAGAGGAATGGTGCAAGAAAATATGCCTAAGTGATTGTTTCTGTGCCCTTGCCATTTACGATGGATCGAGATCCGATTGTTGGAAGAAGGGAATCCCTCTTTCAAATGGGAGGGTTGACCTCGGTGTTGGTTGGACATCTCTGGTCAAAATAAGATTACACAATTCTACCTGGAGACTGCCAGCTATTCCAGATGCAAAGATGAAACATACTTCAAATTTGGTTCACATTGGATCAGTGCTCGTGCTACTAATAACCTATTTGGTTGTTGCTATGATCACCTACTTGGTTGTTTCTCGTATCTACTCTAGGAAAGCAAAAGTCATTGACCTTTACCCAGTCAATCTAAAATGTTTCACTTACGTGGAGCTCAAGCAAGCTACAAATGGATTCAAGGAAGAACTAGGTCTGAAGGAAAAGATGTTTTGGCTGAATGAATCAATTGTATTCAATCATATAACATATATACAGAGCACCTACTATACATCTCGTGGTTCTCCAACAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

552

Amino Acids

62.29

Weight (kDa)

6.03

Isoelectric Point (pI)

40.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 77 - 165 2.4e-16 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 745, 946
AciI CCGC 2 cut(s) 263, 915
AclWI GGATC 5 cut(s) 280, 998, 1215, 1222, 1390
AcsI RAATTY 4 cut(s) 152, 403, 607, 1366
AcuI CTGAAG 1 cut(s) 1580
AfaI GTAC 1 cut(s) 367
AfiI CCNNNNNNNGG 2 cut(s) 651, 1230
AhdI GACNNNNNGTC 1 cut(s) 424
AjnI CCWGG 1 cut(s) 1319
AjuI GAANNNNNNNTTGG 2 cut(s) 144, 176
AleI CACNNNNGTG 1 cut(s) 1511
AloI GAACNNNNNNTCC 2 cut(s) 564, 596
AluBI AGCT 3 cut(s) 1334, 1519, 1529
AluI AGCT 3 cut(s) 1334, 1519, 1529
Alw21I GWGCWC 4 cut(s) 312, 1392, 1521, 1625
Alw26I GTCTC 3 cut(s) 850, 902, 1318
AlwI GGATC 5 cut(s) 280, 998, 1215, 1222, 1390
AlwNI CAGNNNCTG 1 cut(s) 1076
Ama87I CYCGRG 1 cut(s) 360
AoxI GGCC 2 cut(s) 135, 1115
ApeKI GCWGC 1 cut(s) 383
ApoI RAATTY 4 cut(s) 152, 403, 607, 1366
AspLEI GCGC 1 cut(s) 923
AspS9I GGNCC 3 cut(s) 135, 858, 962
AsuHPI GGTGA 4 cut(s) 132, 744, 1059, 1420
AvaI CYCGRG 1 cut(s) 360
AvaII GGWCC 2 cut(s) 858, 962
BaeGI GKGCMC 2 cut(s) 983, 1198
BaeI ACNNNNGTAYC 2 cut(s) 357, 390
BanII GRGCYC 1 cut(s) 1521
BauI CACGAG 2 cut(s) 1391, 1638
Bbv12I GWGCWC 4 cut(s) 312, 1392, 1521, 1625
BbvI GCAGC 1 cut(s) 395
BccI CCATC 5 cut(s) 151, 209, 357, 800, 1205
BciT130I CCWGG 1 cut(s) 1321
BclI TGATCA 2 cut(s) 451, 1425
BcoDI GTCTC 3 cut(s) 850, 902, 1318
BfaI CTAG 5 cut(s) 197, 369, 560, 1458, 1553
BfmI CTRYAG 1 cut(s) 660
BisI GCNGC 1 cut(s) 384
BlsI GCNGC 1 cut(s) 385
Bme1390I CCNGG 1 cut(s) 1321
Bme18I GGWCC 2 cut(s) 858, 962
BmeRI GACNNNNNGTC 1 cut(s) 424
BmeT110I CYCGRG 1 cut(s) 360
BmgT120I GGNCC 3 cut(s) 135, 858, 962
BmrFI CCNGG 1 cut(s) 1321
BmrI ACTGGG 1 cut(s) 1481
BmsI GCATC 6 cut(s) 307, 329, 655, 1016, 1089, 1333
BmuI ACTGGG 1 cut(s) 1481
BplI GAGNNNNNCTC 2 cut(s) 778, 810
BpmI CTGGAG 1 cut(s) 1342
BpuEI CTTGAG 2 cut(s) 832, 1505
BsaAI YACGTR 1 cut(s) 1513
BsaBI GATNNNNATC 1 cut(s) 1219
BsaJI CCNNGG 2 cut(s) 131, 1270
Bsc4I CCNNNNNNNGG 2 cut(s) 651, 1230
Bse1I ACTGG 4 cut(s) 550, 697, 1145, 1487
Bse8I GATNNNNATC 1 cut(s) 1219
BseBI CCWGG 1 cut(s) 1321
BseDI CCNNGG 2 cut(s) 131, 1270
BseGI GGATG 3 cut(s) 143, 641, 1031
BseJI GATNNNNATC 1 cut(s) 1219
BseLI CCNNNNNNNGG 2 cut(s) 651, 1230
BseMII CTCAG 2 cut(s) 411, 502
BseNI ACTGG 4 cut(s) 550, 697, 1145, 1487
BseSI GKGCMC 2 cut(s) 983, 1198
BseXI GCAGC 1 cut(s) 395
BshFI GGCC 2 cut(s) 137, 1117
BsiHKAI GWGCWC 4 cut(s) 312, 1392, 1521, 1625
BsiHKCI CYCGRG 1 cut(s) 360
BsiSI CCGG 1 cut(s) 147
BslFI GGGAC 1 cut(s) 88
BslI CCNNNNNNNGG 2 cut(s) 651, 1230
BsmAI GTCTC 3 cut(s) 850, 902, 1318
BsmFI GGGAC 1 cut(s) 88
BsmI GAATGC 1 cut(s) 655
BsnI GGCC 2 cut(s) 137, 1117
BsoBI CYCGRG 1 cut(s) 360
Bsp1286I GDGCHC 6 cut(s) 312, 983, 1198, 1392, 1521, 1625
Bsp143I GATC 8 cut(s) 272, 451, 1003, 1078, 1214, 1220, 1382, 1425
BspACI CCGC 2 cut(s) 263, 915
BspANI GGCC 2 cut(s) 137, 1117
BspCNI CTCAG 2 cut(s) 410, 501
BspPI GGATC 5 cut(s) 280, 998, 1215, 1222, 1390
BsrI ACTGG 4 cut(s) 550, 697, 1145, 1487
BssECI CCNNGG 2 cut(s) 131, 1270
BssMI GATC 8 cut(s) 272, 451, 1003, 1078, 1214, 1220, 1382, 1425
BssNAI GTATAC 1 cut(s) 746
BssSI CACGAG 2 cut(s) 1391, 1638
BssT1I CCWWGG 1 cut(s) 131
Bst1107I GTATAC 1 cut(s) 746
Bst2BI CACGAG 2 cut(s) 1391, 1638
Bst2UI CCWGG 1 cut(s) 1321
Bst4CI ACNGT 4 cut(s) 280, 303, 750, 763
Bst6I CTCTTC 1 cut(s) 900
BstBAI YACGTR 1 cut(s) 1513
BstC8I GCNNGC 6 cut(s) 414, 653, 893, 1031, 1332, 1527
BstDEI CTNAG 4 cut(s) 397, 488, 756, 1178
BstF5I GGATG 3 cut(s) 143, 641, 1031
BstHHI GCGC 1 cut(s) 923
BstKTI GATC 8 cut(s) 275, 454, 1006, 1081, 1217, 1223, 1385, 1428
BstMAI GTCTC 3 cut(s) 850, 902, 1318
BstMBI GATC 8 cut(s) 272, 451, 1003, 1078, 1214, 1220, 1382, 1425
BstMWI GCNNNNNNNGC 3 cut(s) 186, 383, 1141
BstNI CCWGG 1 cut(s) 1321
BstNSI RCATGY 1 cut(s) 927
BstSCI CCNGG 1 cut(s) 1319
BstSFI CTRYAG 1 cut(s) 660
BstSLI GKGCMC 2 cut(s) 983, 1198
BstV1I GCAGC 1 cut(s) 395
BstX2I RGATCY 1 cut(s) 1220
BstXI CCANNNNNNTGG 1 cut(s) 176
BstYI RGATCY 1 cut(s) 1220
BstZ17I GTATAC 1 cut(s) 746
BsuRI GGCC 2 cut(s) 137, 1117
BtsCI GGATG 3 cut(s) 143, 641, 1031
BtsIMutI CAGTG 1 cut(s) 1392
Cac8I GCNNGC 6 cut(s) 414, 653, 893, 1031, 1332, 1527
CaiI CAGNNNCTG 1 cut(s) 1076
CfoI GCGC 1 cut(s) 923
Cfr13I GGNCC 3 cut(s) 135, 858, 962
Csp6I GTAC 1 cut(s) 366
CviAII CATG 3 cut(s) 388, 874, 924
CviQI GTAC 1 cut(s) 366
DdeI CTNAG 4 cut(s) 397, 488, 756, 1178
DpnI GATC 8 cut(s) 274, 453, 1005, 1080, 1216, 1222, 1384, 1427
DpnII GATC 8 cut(s) 272, 451, 1003, 1078, 1214, 1220, 1382, 1425
DraI TTTAAA 1 cut(s) 10
DriI GACNNNNNGTC 1 cut(s) 424
Eam1104I CTCTTC 1 cut(s) 900
Eam1105I GACNNNNNGTC 1 cut(s) 424
EarI CTCTTC 1 cut(s) 900
EciI GGCGGA 1 cut(s) 278
Ecl136II GAGCTC 1 cut(s) 1519
Eco130I CCWWGG 1 cut(s) 131
Eco24I GRGCYC 1 cut(s) 1521
Eco47I GGWCC 2 cut(s) 858, 962
Eco53kI GAGCTC 1 cut(s) 1519
Eco57I CTGAAG 1 cut(s) 1580
Eco88I CYCGRG 1 cut(s) 360
EcoICRI GAGCTC 1 cut(s) 1519
EcoRI GAATTC 1 cut(s) 607
EcoRII CCWGG 1 cut(s) 1319
EcoT14I CCWWGG 1 cut(s) 131
EcoT22I ATGCAT 1 cut(s) 322
EcoT38I GRGCYC 1 cut(s) 1521
ErhI CCWWGG 1 cut(s) 131
FaeI CATG 3 cut(s) 391, 877, 927
FalI AAGNNNNNCTT 2 cut(s) 1022, 1054
FaqI GGGAC 1 cut(s) 88
FatI CATG 3 cut(s) 387, 873, 923
FauNDI CATATG 1 cut(s) 941
FbaI TGATCA 2 cut(s) 451, 1425
FblI GTMKAC 2 cut(s) 745, 946
Fnu4HI GCNGC 1 cut(s) 384
FokI GGATG 3 cut(s) 130, 628, 1038
FriOI GRGCYC 1 cut(s) 1521
Fsp4HI GCNGC 1 cut(s) 384
FspBI CTAG 5 cut(s) 197, 369, 560, 1458, 1553
GlaI GCGC 1 cut(s) 922
GluI GCNGC 1 cut(s) 384
GsuI CTGGAG 1 cut(s) 1342
HaeIII GGCC 2 cut(s) 137, 1117
HapII CCGG 1 cut(s) 147
HhaI GCGC 1 cut(s) 923
Hin1II CATG 3 cut(s) 391, 877, 927
Hin6I GCGC 1 cut(s) 921
HinP1I GCGC 1 cut(s) 921
HincII GTYRAC 1 cut(s) 1267
HindII GTYRAC 1 cut(s) 1267
HinfI GANTC 8 cut(s) 395, 425, 484, 546, 563, 1242, 1539, 1586
HpaII CCGG 1 cut(s) 147
HphI GGTGA 4 cut(s) 132, 744, 1059, 1420
Hpy166II GTNNAC 5 cut(s) 746, 861, 947, 1267, 1375
Hpy188I TCNGA 3 cut(s) 346, 1225, 1560
Hpy188III TCNNGA 5 cut(s) 324, 399, 797, 1218, 1340
Hpy8I GTNNAC 5 cut(s) 746, 861, 947, 1267, 1375
HpyAV CCTTC 3 cut(s) 263, 1231, 1555
HpyCH4III ACNGT 4 cut(s) 280, 303, 750, 763
HpyCH4IV ACGT 1 cut(s) 1512
HpyCH4V TGCA 7 cut(s) 113, 320, 383, 668, 1029, 1164, 1346
HpyF10VI GCNNNNNNNGC 3 cut(s) 186, 383, 1141
HpyF3I CTNAG 4 cut(s) 397, 488, 756, 1178
HpySE526I ACGT 1 cut(s) 1512
Hsp92II CATG 3 cut(s) 391, 877, 927
HspAI GCGC 1 cut(s) 921
Ksp22I TGATCA 2 cut(s) 451, 1425
Kzo9I GATC 8 cut(s) 272, 451, 1003, 1078, 1214, 1220, 1382, 1425
LmnI GCTCC 2 cut(s) 517, 1516
Lsp1109I GCAGC 1 cut(s) 395
LweI GCATC 6 cut(s) 307, 329, 655, 1016, 1089, 1333
MaeI CTAG 5 cut(s) 197, 369, 560, 1458, 1553
MaeII ACGT 1 cut(s) 1512
MaeIII GTNAC 3 cut(s) 715, 750, 1147
MalI GATC 8 cut(s) 274, 453, 1005, 1080, 1216, 1222, 1384, 1427
MboI GATC 8 cut(s) 272, 451, 1003, 1078, 1214, 1220, 1382, 1425
MfeI CAATTG 1 cut(s) 1590
MflI RGATCY 1 cut(s) 1220
MhlI GDGCHC 6 cut(s) 312, 983, 1198, 1392, 1521, 1625
MlyI GAGTC 4 cut(s) 389, 434, 478, 572
MmeI TCCRAC 2 cut(s) 1211, 1262
MnlI CCTC 8 cut(s) 148, 356, 1011, 1075, 1147, 1254, 1257, 1280
Mph1103I ATGCAT 1 cut(s) 322
MseI TTAA 3 cut(s) 9, 96, 554
MslI CAYNNNNRTG 1 cut(s) 1511
MspI CCGG 1 cut(s) 147
MspR9I CCNGG 1 cut(s) 1321
MunI CAATTG 1 cut(s) 1590
Mva1269I GAATGC 1 cut(s) 655
MvaI CCWGG 1 cut(s) 1321
MwoI GCNNNNNNNGC 3 cut(s) 186, 383, 1141
NdeI CATATG 1 cut(s) 941
NdeII GATC 8 cut(s) 272, 451, 1003, 1078, 1214, 1220, 1382, 1425
NlaIII CATG 3 cut(s) 391, 877, 927
NmuCI GTSAC 1 cut(s) 750
NsiI ATGCAT 1 cut(s) 322
NspI RCATGY 1 cut(s) 927
OliI CACNNNNGTG 1 cut(s) 1511
PaeR7I CTCGAG 1 cut(s) 360
PcsI WCGNNNNNNNCGW 1 cut(s) 98
PctI GAATGC 1 cut(s) 655
PfeI GAWTC 4 cut(s) 546, 1242, 1539, 1586
PkrI GCNGC 1 cut(s) 385
PleI GAGTC 4 cut(s) 389, 433, 478, 571
PpsI GAGTC 4 cut(s) 389, 433, 478, 571
Ppu21I YACGTR 1 cut(s) 1513
Psp124BI GAGCTC 1 cut(s) 1521
Psp6I CCWGG 1 cut(s) 1319
PspGI CCWGG 1 cut(s) 1319
PspPI GGNCC 3 cut(s) 135, 858, 962
PspXI VCTCGAGB 1 cut(s) 360
PstNI CAGNNNCTG 1 cut(s) 1076
PsuI RGATCY 1 cut(s) 1220
RsaI GTAC 1 cut(s) 367
RsaNI GTAC 1 cut(s) 366
RseI CAYNNNNRTG 1 cut(s) 1511
SacI GAGCTC 1 cut(s) 1521
SaqAI TTAA 3 cut(s) 9, 96, 554
SatI GCNGC 1 cut(s) 384
Sau3AI GATC 8 cut(s) 272, 451, 1003, 1078, 1214, 1220, 1382, 1425
Sau96I GGNCC 3 cut(s) 135, 858, 962
SchI GAGTC 4 cut(s) 389, 434, 478, 572
ScrFI CCNGG 1 cut(s) 1321
SduI GDGCHC 6 cut(s) 312, 983, 1198, 1392, 1521, 1625
SfaNI GCATC 6 cut(s) 307, 329, 655, 1016, 1089, 1333
SfcI CTRYAG 1 cut(s) 660
Sfr274I CTCGAG 1 cut(s) 360
SinI GGWCC 2 cut(s) 858, 962
SlaI CTCGAG 1 cut(s) 360
SmiMI CAYNNNNRTG 1 cut(s) 1511
SmlI CTYRAG 3 cut(s) 360, 847, 1520
SmoI CTYRAG 3 cut(s) 360, 847, 1520
SsiI CCGC 2 cut(s) 263, 915
SspMI CTAG 5 cut(s) 197, 369, 560, 1458, 1553
SstI GAGCTC 1 cut(s) 1521
StyD4I CCNGG 1 cut(s) 1319
StyI CCWWGG 1 cut(s) 131
TaaI ACNGT 4 cut(s) 280, 303, 750, 763
TaiI ACGT 1 cut(s) 1515
TaqI TCGA 2 cut(s) 361, 1217
TfiI GAWTC 4 cut(s) 546, 1242, 1539, 1586
Tru1I TTAA 3 cut(s) 9, 96, 554
Tru9I TTAA 3 cut(s) 9, 96, 554
TscAI CASTG 1 cut(s) 1392
TseFI GTSAC 1 cut(s) 750
TseI GCWGC 1 cut(s) 383
Tsp45I GTSAC 1 cut(s) 750
TspDTI ATGAA 5 cut(s) 181, 862, 1074, 1367, 1599
TspRI CASTG 1 cut(s) 1392
VpaK11BI GGWCC 2 cut(s) 858, 962
XapI RAATTY 4 cut(s) 152, 403, 607, 1366
XceI RCATGY 1 cut(s) 927
XhoI CTCGAG 1 cut(s) 360
XmiI GTMKAC 2 cut(s) 745, 946
XspI CTAG 5 cut(s) 197, 369, 560, 1458, 1553
Zsp2I ATGCAT 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.