Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000765.1

Orthogroup ID

OG0003813

Physical Location & Seq

Genomic Coordinates Reverse (-)

167665 .. 168746

Gene Structure 1082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000765.1_g000041.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

atgtcagagcagagatccgggttaagaatccgagacgctagcccggactcggttattgtaaactcgagtccagcctcttctcctcttccgcttccgccagcgttgaccgctgctccttcgcctccgaagcctttgaccacgactccaccgcctccgagatctctccgaactcggcggcgcaccgtcaccaggttgaagagagctccagtggtccggatcgcgatccagatccgaagacgagccccgctttacacatcaccagccaccaccacggtcgtcgatccagaaaaggagaaaaggccaaaggtactacagctaagcttcgggatgacgtcgctttcttcctttccttttcagtttttccaaacgatcacgaagctctttctctctcgccttgaaagatctgaagctctgtccaagaagctagacaggccgagacccgcttctttggatttgaacaatgtcaccgcctcgtctccgagattggggaccttaaagaagagctcaacggcgtctcgcaagtctggaaccttcccaagtcccggaacacctacctaccggcatactagtcttggagtgcagaagggttggagctcggagcgagttccggccaatgctaatttggggggcaggaagaatacaactgctgctgctatgttgccattcaacaatgggaggacgttgccgtcgaaatgggaagatgcagagaggtggattttcagtccggttcagggggatggtgtgacgaggcagtcgaacagcaattatatcgaattgcgctgcgctccggtgcttgccagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Remorin_C

Protein Analysis

267

Amino Acids

29.31

Weight (kDa)

11.61

Isoelectric Point (pI)

77.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45207 AT1G45207
fragaria_vesca	FvH4_2g34300 FvH4_2g34300 FvH4_2g34300 FvH4_2g34300 FvH4_2g34300
malus_domestica	MD00G1220400.v1.1 MD08G1098900.v1.1 MD15G1081400.v1.1
prunus_persica	Prupe.1G434200_v2.0.a1 Prupe.1G434200_v2.0.a1
pyrus_communis	pycom08g08060 pycom15g07610
rosa_chinensis	RchiOBHm_Chr6g0308061
rosa_laevigata	RLG00000010671
rosa_multiflora	Rmu_sc0000765.1_g000041 Rmu_sc0002624.1_g000004
rosa_roxburghii	Rroxscaffold_7G00160610
rosa_rugosa	Rorug01G0143000.1 Rorug01G0143100.1 Rorug05G0563400 Rorug05G0565600 Rorug06G0100400.1 Rorug06G0363500 Rorug06G0363500 Rorug07G0183100
rosa_samantha	Rh1CG259500 Rh3BG268800 Rh6AG472400 Rh6BG483500 Rh6CG488400
rosa_wichuraiana	Rw0G008810 Rw6G041230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	685, 751
AatII	GACGTC	1 cut(s)	335
AccII	CGCG	1 cut(s)	221
AccIII	TCCGGA	1 cut(s)	213
AciI	CCGC	8 cut(s)	89, 95, 108, 149, 175, 245, 441, 468
AclWI	GGATC	5 cut(s)	9, 217, 223, 224, 275
AcoI	YGGCCR	1 cut(s)	609
AcuI	CTGAAG	1 cut(s)	426
AcyI	GRCGYC	2 cut(s)	332, 512
AfaI	GTAC	1 cut(s)	309
AfiI	CCNNNNNNNGG	5 cut(s)	49, 189, 485, 542, 731
AgsI	TTSAA	4 cut(s)	196, 398, 457, 667
AhlI	ACTAGT	1 cut(s)	566
AjnI	CCWGG	1 cut(s)	188
AluBI	AGCT	8 cut(s)	203, 316, 321, 379, 410, 424, 504, 594
AluI	AGCT	8 cut(s)	203, 316, 321, 379, 410, 424, 504, 594
Alw21I	GWGCWC	3 cut(s)	205, 506, 596
Alw26I	GTCTC	4 cut(s)	27, 430, 480, 519
AlwI	GGATC	5 cut(s)	9, 217, 223, 224, 275
Ama87I	CYCGRG	1 cut(s)	64
Aor13HI	TCCGGA	1 cut(s)	213
AoxI	GGCC	3 cut(s)	299, 431, 609
ApeKI	GCWGC	4 cut(s)	110, 647, 650, 780
AspLEI	GCGC	3 cut(s)	180, 780, 785
AspS9I	GGNCC	2 cut(s)	211, 489
AsuC2I	CCSGG	3 cut(s)	19, 44, 543
AsuHPI	GGTGA	3 cut(s)	178, 249, 457
AsuNHI	GCTAGC	1 cut(s)	38
AvaI	CYCGRG	1 cut(s)	64
AvaII	GGWCC	2 cut(s)	211, 489
BanII	GRGCYC	4 cut(s)	205, 244, 506, 596
BbsI	GAAGAC	1 cut(s)	241
Bbv12I	GWGCWC	3 cut(s)	205, 506, 596
BbvI	GCAGC	4 cut(s)	97, 634, 637, 767
BccI	CCATC	1 cut(s)	731
BceAI	ACGGC	2 cut(s)	525, 670
BcgI	CGANNNNNNTGC	2 cut(s)	751, 785
BciT130I	CCWGG	1 cut(s)	190
BcnI	CCSGG	3 cut(s)	19, 44, 543
BcoDI	GTCTC	4 cut(s)	27, 430, 480, 519
BcuI	ACTAGT	1 cut(s)	566
BfaI	CTAG	3 cut(s)	39, 425, 567
BfmI	CTRYAG	1 cut(s)	311
BglII	AGATCT	2 cut(s)	158, 401
BisI	GCNGC	5 cut(s)	111, 176, 648, 651, 781
BlpI	GCTNAGC	1 cut(s)	317
BlsI	GCNGC	5 cut(s)	112, 177, 649, 652, 782
Bme1390I	CCNGG	4 cut(s)	19, 44, 190, 543
Bme18I	GGWCC	2 cut(s)	211, 489
BmeT110I	CYCGRG	1 cut(s)	64
BmgT120I	GGNCC	2 cut(s)	211, 489
BmiI	GGNNCC	2 cut(s)	490, 529
BmrFI	CCNGG	4 cut(s)	19, 44, 190, 543
BmsI	GCATC	1 cut(s)	691
BmtI	GCTAGC	1 cut(s)	42
BpiI	GAAGAC	1 cut(s)	241
BpmI	CTGGAG	1 cut(s)	189
Bpu1102I	GCTNAGC	1 cut(s)	317
BpuMI	CCSGG	3 cut(s)	19, 44, 543
BsaBI	GATNNNNATC	2 cut(s)	221, 227
BsaHI	GRCGYC	2 cut(s)	332, 512
BsaI	GGTCTC	1 cut(s)	430
BsaJI	CCNNGG	1 cut(s)	270
BsaWI	WCCGGW	3 cut(s)	213, 724, 787
BsaXI	ACNNNNNCTCC	4 cut(s)	97, 127, 127, 157
Bsc4I	CCNNNNNNNGG	5 cut(s)	49, 189, 485, 542, 731
Bse118I	RCCGGY	1 cut(s)	558
Bse1I	ACTGG	1 cut(s)	206
Bse8I	GATNNNNATC	2 cut(s)	221, 227
BseAI	TCCGGA	1 cut(s)	213
BseBI	CCWGG	1 cut(s)	190
BseDI	CCNNGG	1 cut(s)	270
BseGI	GGATG	2 cut(s)	333, 742
BseJI	GATNNNNATC	2 cut(s)	221, 227
BseLI	CCNNNNNNNGG	5 cut(s)	49, 189, 485, 542, 731
BseNI	ACTGG	1 cut(s)	206
BseRI	GAGGAG	1 cut(s)	72
BseXI	GCAGC	4 cut(s)	97, 634, 637, 767
BsgI	GTGCAG	1 cut(s)	599
Bsh1236I	CGCG	1 cut(s)	221
Bsh1285I	CGRYCG	1 cut(s)	276
BshFI	GGCC	3 cut(s)	301, 433, 611
BsiEI	CGRYCG	1 cut(s)	276
BsiHKAI	GWGCWC	3 cut(s)	205, 506, 596
BsiHKCI	CYCGRG	1 cut(s)	64
BsiSI	CCGG	8 cut(s)	18, 44, 214, 543, 559, 608, 725, 788
BslFI	GGGAC	2 cut(s)	502, 525
BslI	CCNNNNNNNGG	5 cut(s)	49, 189, 485, 542, 731
BsmAI	GTCTC	4 cut(s)	27, 430, 480, 519
BsmBI	CGTCTC	3 cut(s)	27, 480, 519
BsmFI	GGGAC	2 cut(s)	502, 525
BsnI	GGCC	3 cut(s)	301, 433, 611
Bso31I	GGTCTC	1 cut(s)	430
BsoBI	CYCGRG	1 cut(s)	64
Bsp1286I	GDGCHC	4 cut(s)	205, 244, 506, 596
Bsp13I	TCCGGA	1 cut(s)	213
Bsp143I	GATC	8 cut(s)	14, 158, 216, 222, 228, 280, 369, 401
Bsp1720I	GCTNAGC	1 cut(s)	317
Bsp68I	TCGCGA	1 cut(s)	221
BspACI	CCGC	8 cut(s)	89, 95, 108, 149, 175, 245, 441, 468
BspANI	GGCC	3 cut(s)	301, 433, 611
BspEI	TCCGGA	1 cut(s)	213
BspFNI	CGCG	1 cut(s)	221
BspLI	GGNNCC	2 cut(s)	490, 529
BspOI	GCTAGC	1 cut(s)	42
BspPI	GGATC	5 cut(s)	9, 217, 223, 224, 275
BspQI	GCTCTTC	1 cut(s)	494
BspTNI	GGTCTC	1 cut(s)	430
BsrFI	RCCGGY	1 cut(s)	558
BsrI	ACTGG	1 cut(s)	206
BssAI	RCCGGY	1 cut(s)	558
BssECI	CCNNGG	1 cut(s)	270
BssMI	GATC	8 cut(s)	14, 158, 216, 222, 228, 280, 369, 401
BssNI	GRCGYC	2 cut(s)	332, 512
Bst2UI	CCWGG	1 cut(s)	190
Bst4CI	ACNGT	2 cut(s)	184, 274
Bst6I	CTCTTC	4 cut(s)	82, 90, 191, 494
BstACI	GRCGYC	2 cut(s)	332, 512
BstC8I	GCNNGC	3 cut(s)	40, 99, 795
BstDEI	CTNAG	1 cut(s)	317
BstDSI	CCRYGG	1 cut(s)	270
BstF5I	GGATG	2 cut(s)	333, 742
BstFNI	CGCG	1 cut(s)	221
BstHHI	GCGC	3 cut(s)	180, 780, 785
BstKTI	GATC	8 cut(s)	17, 161, 219, 225, 231, 283, 372, 404
BstMAI	GTCTC	4 cut(s)	27, 430, 480, 519
BstMBI	GATC	8 cut(s)	14, 158, 216, 222, 228, 280, 369, 401
BstMCI	CGRYCG	1 cut(s)	276
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 127, 430
BstNI	CCWGG	1 cut(s)	190
BstSCI	CCNGG	4 cut(s)	17, 42, 188, 541
BstSFI	CTRYAG	1 cut(s)	311
BstUI	CGCG	1 cut(s)	221
BstV1I	GCAGC	4 cut(s)	97, 634, 637, 767
BstV2I	GAAGAC	1 cut(s)	241
BstX2I	RGATCY	4 cut(s)	14, 158, 228, 401
BstYI	RGATCY	4 cut(s)	14, 158, 228, 401
BsuRI	GGCC	3 cut(s)	301, 433, 611
BtgI	CCRYGG	1 cut(s)	270
BtsCI	GGATG	2 cut(s)	333, 742
BtsIMutI	CAGTG	1 cut(s)	213
BtuMI	TCGCGA	1 cut(s)	221
Cac8I	GCNNGC	3 cut(s)	40, 99, 795
CfoI	GCGC	3 cut(s)	180, 780, 785
Cfr10I	RCCGGY	1 cut(s)	558
Cfr13I	GGNCC	2 cut(s)	211, 489
CseI	GACGC	2 cut(s)	44, 501
CsiI	ACCWGGT	1 cut(s)	188
Csp6I	GTAC	1 cut(s)	308
CviQI	GTAC	1 cut(s)	308
DdeI	CTNAG	1 cut(s)	317
DpnI	GATC	8 cut(s)	16, 160, 218, 224, 230, 282, 371, 403
DpnII	GATC	8 cut(s)	14, 158, 216, 222, 228, 280, 369, 401
DrdI	GACNNNNNNGTC	2 cut(s)	685, 751
DseDI	GACNNNNNNGTC	2 cut(s)	685, 751
EaeI	YGGCCR	1 cut(s)	609
Eam1104I	CTCTTC	4 cut(s)	82, 90, 191, 494
EarI	CTCTTC	4 cut(s)	82, 90, 191, 494
EciI	GGCGGA	1 cut(s)	84
Ecl136II	GAGCTC	3 cut(s)	203, 504, 594
Eco24I	GRGCYC	4 cut(s)	205, 244, 506, 596
Eco31I	GGTCTC	1 cut(s)	430
Eco47I	GGWCC	2 cut(s)	211, 489
Eco53kI	GAGCTC	3 cut(s)	203, 504, 594
Eco57I	CTGAAG	1 cut(s)	426
Eco88I	CYCGRG	1 cut(s)	64
EcoICRI	GAGCTC	3 cut(s)	203, 504, 594
EcoO109I	RGGNCCY	1 cut(s)	489
EcoRII	CCWGG	1 cut(s)	188
EcoT38I	GRGCYC	4 cut(s)	205, 244, 506, 596
Esp3I	CGTCTC	3 cut(s)	27, 480, 519
FaiI	YATR	3 cut(s)	564, 656, 768
FaqI	GGGAC	2 cut(s)	502, 525
FauI	CCCGC	2 cut(s)	252, 448
Fnu4HI	GCNGC	5 cut(s)	111, 176, 648, 651, 781
FokI	GGATG	2 cut(s)	340, 749
FriOI	GRGCYC	4 cut(s)	205, 244, 506, 596
Fsp4HI	GCNGC	5 cut(s)	111, 176, 648, 651, 781
FspBI	CTAG	3 cut(s)	39, 425, 567
GlaI	GCGC	3 cut(s)	179, 779, 784
GluI	GCNGC	5 cut(s)	111, 176, 648, 651, 781
GsuI	CTGGAG	1 cut(s)	189
HaeIII	GGCC	3 cut(s)	301, 433, 611
HapII	CCGG	8 cut(s)	18, 44, 214, 543, 559, 608, 725, 788
HgaI	GACGC	2 cut(s)	44, 501
HhaI	GCGC	3 cut(s)	180, 780, 785
Hin1I	GRCGYC	2 cut(s)	332, 512
Hin6I	GCGC	3 cut(s)	178, 778, 783
HinP1I	GCGC	3 cut(s)	178, 778, 783
HincII	GTYRAC	1 cut(s)	105
HindII	GTYRAC	1 cut(s)	105
HindIII	AAGCTT	1 cut(s)	319
HinfI	GANTC	4 cut(s)	27, 47, 67, 142
HpaII	CCGG	8 cut(s)	18, 44, 214, 543, 559, 608, 725, 788
HphI	GGTGA	3 cut(s)	178, 249, 457
Hpy166II	GTNNAC	2 cut(s)	61, 105
Hpy188I	TCNGA	9 cut(s)	7, 32, 126, 156, 167, 233, 406, 480, 598
Hpy188III	TCNNGA	7 cut(s)	214, 220, 226, 284, 325, 373, 525
Hpy8I	GTNNAC	2 cut(s)	61, 105
Hpy99I	CGWCG	3 cut(s)	281, 337, 691
HpyAV	CCTTC	3 cut(s)	126, 541, 577
HpyCH4III	ACNGT	2 cut(s)	184, 274
HpyCH4IV	ACGT	2 cut(s)	332, 680
HpyCH4V	TGCA	2 cut(s)	580, 704
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 127, 430
HpyF3I	CTNAG	1 cut(s)	317
HpySE526I	ACGT	2 cut(s)	332, 680
Hsp92I	GRCGYC	2 cut(s)	332, 512
HspAI	GCGC	3 cut(s)	178, 778, 783
Kpn2I	TCCGGA	1 cut(s)	213
Kzo9I	GATC	8 cut(s)	14, 158, 216, 222, 228, 280, 369, 401
LguI	GCTCTTC	1 cut(s)	494
LmnI	GCTCC	5 cut(s)	118, 208, 591, 598, 790
Lsp1109I	GCAGC	4 cut(s)	97, 634, 637, 767
LweI	GCATC	1 cut(s)	691
MabI	ACCWGGT	1 cut(s)	188
MaeI	CTAG	3 cut(s)	39, 425, 567
MaeII	ACGT	2 cut(s)	332, 680
MaeIII	GTNAC	3 cut(s)	184, 463, 742
MalI	GATC	8 cut(s)	16, 160, 218, 224, 230, 282, 371, 403
MboI	GATC	8 cut(s)	14, 158, 216, 222, 228, 280, 369, 401
MboII	GAAGA	8 cut(s)	69, 77, 208, 246, 333, 511, 646, 710
MflI	RGATCY	4 cut(s)	14, 158, 228, 401
MhlI	GDGCHC	4 cut(s)	205, 244, 506, 596
MluCI	AATT	3 cut(s)	619, 763, 773
MlyI	GAGTC	3 cut(s)	41, 76, 136
MmeI	TCCRAC	1 cut(s)	569
MnlI	CCTC	8 cut(s)	85, 93, 132, 162, 481, 669, 702, 741
MroI	TCCGGA	1 cut(s)	213
MseI	TTAA	2 cut(s)	23, 494
MspA1I	CMGCKG	1 cut(s)	110
MspI	CCGG	8 cut(s)	18, 44, 214, 543, 559, 608, 725, 788
MspR9I	CCNGG	4 cut(s)	19, 44, 190, 543
MteI	GCGCNGCGC	1 cut(s)	781
MvaI	CCWGG	1 cut(s)	190
MvnI	CGCG	1 cut(s)	221
MwoI	GCNNNNNNNGC	3 cut(s)	107, 127, 430
NciI	CCSGG	3 cut(s)	19, 44, 543
NdeII	GATC	8 cut(s)	14, 158, 216, 222, 228, 280, 369, 401
NheI	GCTAGC	1 cut(s)	38
NlaIV	GGNNCC	2 cut(s)	490, 529
NmeAIII	GCCGAG	2 cut(s)	151, 459
NmuCI	GTSAC	3 cut(s)	184, 463, 742
NruI	TCGCGA	1 cut(s)	221
PaeR7I	CTCGAG	1 cut(s)	64
PciSI	GCTCTTC	1 cut(s)	494
PcsI	WCGNNNNNNNCGW	2 cut(s)	686, 752
PfeI	GAWTC	1 cut(s)	27
PfoI	TCCNGGA	1 cut(s)	541
PkrI	GCNGC	5 cut(s)	112, 177, 649, 652, 782
PleI	GAGTC	3 cut(s)	41, 75, 136
PpsI	GAGTC	3 cut(s)	41, 75, 136
PpuMI	RGGWCCY	1 cut(s)	489
Psp124BI	GAGCTC	3 cut(s)	205, 506, 596
Psp5II	RGGWCCY	1 cut(s)	489
Psp6I	CCWGG	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	188
PspN4I	GGNNCC	2 cut(s)	490, 529
PspPI	GGNCC	2 cut(s)	211, 489
PspPPI	RGGWCCY	1 cut(s)	489
PspXI	VCTCGAGB	1 cut(s)	64
PsuI	RGATCY	4 cut(s)	14, 158, 228, 401
RruI	TCGCGA	1 cut(s)	221
RsaI	GTAC	1 cut(s)	309
RsaNI	GTAC	1 cut(s)	308
SacI	GAGCTC	3 cut(s)	205, 506, 596
SapI	GCTCTTC	1 cut(s)	494
SaqAI	TTAA	2 cut(s)	23, 494
SatI	GCNGC	5 cut(s)	111, 176, 648, 651, 781
Sau3AI	GATC	8 cut(s)	14, 158, 216, 222, 228, 280, 369, 401
Sau96I	GGNCC	2 cut(s)	211, 489
SchI	GAGTC	3 cut(s)	41, 76, 136
ScrFI	CCNGG	4 cut(s)	19, 44, 190, 543
SduI	GDGCHC	4 cut(s)	205, 244, 506, 596
SexAI	ACCWGGT	1 cut(s)	188
SfaNI	GCATC	1 cut(s)	691
SfcI	CTRYAG	1 cut(s)	311
Sfr274I	CTCGAG	1 cut(s)	64
SinI	GGWCC	2 cut(s)	211, 489
SlaI	CTCGAG	1 cut(s)	64
SmlI	CTYRAG	1 cut(s)	64
SmoI	CTYRAG	1 cut(s)	64
SpeI	ACTAGT	1 cut(s)	566
Sse9I	AATT	3 cut(s)	619, 763, 773
SsiI	CCGC	8 cut(s)	89, 95, 108, 149, 175, 245, 441, 468
SspMI	CTAG	3 cut(s)	39, 425, 567
SstI	GAGCTC	3 cut(s)	205, 506, 596
StyD4I	CCNGG	4 cut(s)	17, 42, 188, 541
TaaI	ACNGT	2 cut(s)	184, 274
TaiI	ACGT	2 cut(s)	335, 683
TaqI	TCGA	5 cut(s)	65, 279, 689, 755, 771
TasI	AATT	3 cut(s)	619, 763, 773
TauI	GCSGC	1 cut(s)	178
TfiI	GAWTC	1 cut(s)	27
Tru1I	TTAA	2 cut(s)	23, 494
Tru9I	TTAA	2 cut(s)	23, 494
TscAI	CASTG	1 cut(s)	213
TseFI	GTSAC	3 cut(s)	184, 463, 742
TseI	GCWGC	4 cut(s)	110, 647, 650, 780
Tsp45I	GTSAC	3 cut(s)	184, 463, 742
TspRI	CASTG	1 cut(s)	213
VpaK11BI	GGWCC	2 cut(s)	211, 489
XcmI	CCANNNNNNNNNTGG	1 cut(s)	619
XhoI	CTCGAG	1 cut(s)	64
XspI	CTAG	3 cut(s)	39, 425, 567
ZraI	GACGTC	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.