Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00338

Orthogroup ID

OG0003813

Physical Location & Seq

Genomic Coordinates Reverse (-)

21386 .. 22222

Gene Structure 837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G008810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGCAGAACTCGGCGGCGCACCGTCACCAGGTTGAAGAGAGCTCCAGTGGTCCGGATCGCGATCCAGATCCGAAGACGAGCCCCGCTTTACACATCACCAGCCACCACCACGGTCGTCGATCCAGAAAAGGAGAAAAGGCCAAAGTTCCAAAGCAAGACAGCGACGCCGACTTGGTTCTTGATTCAGCACGAAGCTCTTTCTCTCTCGCCTTGAAAGAATGCCAGGACCGTCGATCTAGATCTGAAGCTCTGTCCAAGAAGCTAGACAGGCCGAGACCCGCTTCTTTGGATTTGAACAATGTCACCGCCTCGTCTCCGAGATTGGGGACCTTAAAGAAGAGCTCAACGGCGTCTCGCAAGTCTGGAACCTTCCCAAGTCCCGGAACACCTACCTACCGGCATACTAGTCTTGGAGTGCAGAAGGGTTGGAGCTCGGAGCGAGTTCCGGCCAATGCTAATTTGGGGGGCAGGAAGAATACAACTGCTGCTGCTATGTTGCCATTCAACAATGGGAGGACGTTGCCGTCGAAATGGGAAGATGCAGAGAGGTGGATTTTCAGTCCGGTTCAGGGGGATGGTGTGACGAGGCAGTCGAACAGCAATTATATCGAATTGCGCTGCGCTCCGGTGCTTGCCAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Remorin_C

Protein Analysis

213

Amino Acids

23.3

Weight (kDa)

10.3

Isoelectric Point (pI)

68.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45207 AT1G45207
fragaria_vesca	FvH4_2g34300 FvH4_2g34300 FvH4_2g34300 FvH4_2g34300 FvH4_2g34300
malus_domestica	MD00G1220400.v1.1 MD08G1098900.v1.1 MD15G1081400.v1.1
prunus_persica	Prupe.1G434200_v2.0.a1 Prupe.1G434200_v2.0.a1
pyrus_communis	pycom08g08060 pycom15g07610
rosa_chinensis	RchiOBHm_Chr6g0308061
rosa_laevigata	RLG00000010671
rosa_multiflora	Rmu_sc0000765.1_g000041 Rmu_sc0002624.1_g000004
rosa_roxburghii	Rroxscaffold_7G00160610
rosa_rugosa	Rorug01G0143000.1 Rorug01G0143100.1 Rorug05G0563400 Rorug05G0565600 Rorug06G0100400.1 Rorug06G0363500 Rorug06G0363500 Rorug07G0183100
rosa_samantha	Rh1CG259500 Rh3BG268800 Rh6AG472400 Rh6BG483500 Rh6CG488400
rosa_wichuraiana	Rw0G008810 Rw6G041230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	523, 589
AccII	CGCG	1 cut(s)	60
AccIII	TCCGGA	1 cut(s)	52
AciI	CCGC	4 cut(s)	14, 84, 279, 306
AclWI	GGATC	4 cut(s)	56, 62, 63, 114
AcoI	YGGCCR	1 cut(s)	447
AcuI	CTGAAG	1 cut(s)	264
AcyI	GRCGYC	2 cut(s)	165, 350
AfiI	CCNNNNNNNGG	4 cut(s)	28, 323, 380, 569
AgsI	TTSAA	4 cut(s)	35, 214, 295, 505
AhlI	ACTAGT	1 cut(s)	404
AjnI	CCWGG	2 cut(s)	27, 222
AluBI	AGCT	6 cut(s)	42, 195, 248, 262, 342, 432
AluI	AGCT	6 cut(s)	42, 195, 248, 262, 342, 432
Alw21I	GWGCWC	3 cut(s)	44, 344, 434
Alw26I	GTCTC	3 cut(s)	268, 318, 357
AlwI	GGATC	4 cut(s)	56, 62, 63, 114
Aor13HI	TCCGGA	1 cut(s)	52
AoxI	GGCC	3 cut(s)	138, 269, 447
ApeKI	GCWGC	3 cut(s)	485, 488, 618
AspLEI	GCGC	3 cut(s)	19, 618, 623
AspS9I	GGNCC	3 cut(s)	50, 226, 327
AsuC2I	CCSGG	1 cut(s)	381
AsuHPI	GGTGA	3 cut(s)	17, 88, 295
AvaII	GGWCC	3 cut(s)	50, 226, 327
BanII	GRGCYC	4 cut(s)	44, 83, 344, 434
BbsI	GAAGAC	1 cut(s)	80
Bbv12I	GWGCWC	3 cut(s)	44, 344, 434
BbvI	GCAGC	3 cut(s)	472, 475, 605
BccI	CCATC	1 cut(s)	569
BceAI	ACGGC	2 cut(s)	363, 508
BcgI	CGANNNNNNTGC	2 cut(s)	589, 623
BciT130I	CCWGG	2 cut(s)	29, 224
BcnI	CCSGG	1 cut(s)	381
BcoDI	GTCTC	3 cut(s)	268, 318, 357
BcuI	ACTAGT	1 cut(s)	404
BfaI	CTAG	3 cut(s)	237, 263, 405
BglII	AGATCT	1 cut(s)	239
BisI	GCNGC	4 cut(s)	15, 486, 489, 619
BlsI	GCNGC	4 cut(s)	16, 487, 490, 620
Bme1390I	CCNGG	3 cut(s)	29, 224, 381
Bme18I	GGWCC	3 cut(s)	50, 226, 327
BmgT120I	GGNCC	3 cut(s)	50, 226, 327
BmiI	GGNNCC	2 cut(s)	328, 367
BmrFI	CCNGG	3 cut(s)	29, 224, 381
BmsI	GCATC	1 cut(s)	529
BpiI	GAAGAC	1 cut(s)	80
BpmI	CTGGAG	1 cut(s)	28
BpuMI	CCSGG	1 cut(s)	381
BsaBI	GATNNNNATC	3 cut(s)	60, 66, 238
BsaHI	GRCGYC	2 cut(s)	165, 350
BsaI	GGTCTC	1 cut(s)	268
BsaJI	CCNNGG	1 cut(s)	109
BsaWI	WCCGGW	3 cut(s)	52, 562, 625
Bsc4I	CCNNNNNNNGG	4 cut(s)	28, 323, 380, 569
Bse118I	RCCGGY	1 cut(s)	396
Bse1I	ACTGG	1 cut(s)	45
Bse8I	GATNNNNATC	3 cut(s)	60, 66, 238
BseAI	TCCGGA	1 cut(s)	52
BseBI	CCWGG	2 cut(s)	29, 224
BseDI	CCNNGG	1 cut(s)	109
BseGI	GGATG	1 cut(s)	580
BseJI	GATNNNNATC	3 cut(s)	60, 66, 238
BseLI	CCNNNNNNNGG	4 cut(s)	28, 323, 380, 569
BseNI	ACTGG	1 cut(s)	45
BseXI	GCAGC	3 cut(s)	472, 475, 605
BsgI	GTGCAG	1 cut(s)	437
Bsh1236I	CGCG	1 cut(s)	60
Bsh1285I	CGRYCG	1 cut(s)	115
BshFI	GGCC	3 cut(s)	140, 271, 449
BsiEI	CGRYCG	1 cut(s)	115
BsiHKAI	GWGCWC	3 cut(s)	44, 344, 434
BsiSI	CCGG	6 cut(s)	53, 381, 397, 446, 563, 626
BslFI	GGGAC	2 cut(s)	340, 363
BslI	CCNNNNNNNGG	4 cut(s)	28, 323, 380, 569
BsmAI	GTCTC	3 cut(s)	268, 318, 357
BsmBI	CGTCTC	2 cut(s)	318, 357
BsmFI	GGGAC	2 cut(s)	340, 363
BsmI	GAATGC	1 cut(s)	224
BsnI	GGCC	3 cut(s)	140, 271, 449
Bso31I	GGTCTC	1 cut(s)	268
Bsp1286I	GDGCHC	4 cut(s)	44, 83, 344, 434
Bsp13I	TCCGGA	1 cut(s)	52
Bsp143I	GATC	6 cut(s)	55, 61, 67, 119, 233, 239
Bsp68I	TCGCGA	1 cut(s)	60
BspACI	CCGC	4 cut(s)	14, 84, 279, 306
BspANI	GGCC	3 cut(s)	140, 271, 449
BspEI	TCCGGA	1 cut(s)	52
BspFNI	CGCG	1 cut(s)	60
BspLI	GGNNCC	2 cut(s)	328, 367
BspPI	GGATC	4 cut(s)	56, 62, 63, 114
BspQI	GCTCTTC	1 cut(s)	332
BspTNI	GGTCTC	1 cut(s)	268
BsrFI	RCCGGY	1 cut(s)	396
BsrI	ACTGG	1 cut(s)	45
BssAI	RCCGGY	1 cut(s)	396
BssECI	CCNNGG	1 cut(s)	109
BssMI	GATC	6 cut(s)	55, 61, 67, 119, 233, 239
BssNI	GRCGYC	2 cut(s)	165, 350
Bst2UI	CCWGG	2 cut(s)	29, 224
Bst4CI	ACNGT	3 cut(s)	23, 113, 230
Bst6I	CTCTTC	2 cut(s)	30, 332
BstACI	GRCGYC	2 cut(s)	165, 350
BstC8I	GCNNGC	1 cut(s)	633
BstDSI	CCRYGG	1 cut(s)	109
BstF5I	GGATG	1 cut(s)	580
BstFNI	CGCG	1 cut(s)	60
BstHHI	GCGC	3 cut(s)	19, 618, 623
BstKTI	GATC	6 cut(s)	58, 64, 70, 122, 236, 242
BstMAI	GTCTC	3 cut(s)	268, 318, 357
BstMBI	GATC	6 cut(s)	55, 61, 67, 119, 233, 239
BstMCI	CGRYCG	1 cut(s)	115
BstMWI	GCNNNNNNNGC	1 cut(s)	268
BstNI	CCWGG	2 cut(s)	29, 224
BstSCI	CCNGG	3 cut(s)	27, 222, 379
BstUI	CGCG	1 cut(s)	60
BstV1I	GCAGC	3 cut(s)	472, 475, 605
BstV2I	GAAGAC	1 cut(s)	80
BstX2I	RGATCY	2 cut(s)	67, 239
BstYI	RGATCY	2 cut(s)	67, 239
BsuRI	GGCC	3 cut(s)	140, 271, 449
BtgI	CCRYGG	1 cut(s)	109
BtsCI	GGATG	1 cut(s)	580
BtsIMutI	CAGTG	1 cut(s)	52
BtuMI	TCGCGA	1 cut(s)	60
Cac8I	GCNNGC	1 cut(s)	633
CfoI	GCGC	3 cut(s)	19, 618, 623
Cfr10I	RCCGGY	1 cut(s)	396
Cfr13I	GGNCC	3 cut(s)	50, 226, 327
CseI	GACGC	2 cut(s)	173, 339
CsiI	ACCWGGT	1 cut(s)	27
DpnI	GATC	6 cut(s)	57, 63, 69, 121, 235, 241
DpnII	GATC	6 cut(s)	55, 61, 67, 119, 233, 239
DrdI	GACNNNNNNGTC	2 cut(s)	523, 589
DseDI	GACNNNNNNGTC	2 cut(s)	523, 589
EaeI	YGGCCR	1 cut(s)	447
Eam1104I	CTCTTC	2 cut(s)	30, 332
EarI	CTCTTC	2 cut(s)	30, 332
Ecl136II	GAGCTC	3 cut(s)	42, 342, 432
Eco24I	GRGCYC	4 cut(s)	44, 83, 344, 434
Eco31I	GGTCTC	1 cut(s)	268
Eco47I	GGWCC	3 cut(s)	50, 226, 327
Eco53kI	GAGCTC	3 cut(s)	42, 342, 432
Eco57I	CTGAAG	1 cut(s)	264
EcoICRI	GAGCTC	3 cut(s)	42, 342, 432
EcoO109I	RGGNCCY	1 cut(s)	327
EcoRII	CCWGG	2 cut(s)	27, 222
EcoT38I	GRGCYC	4 cut(s)	44, 83, 344, 434
Esp3I	CGTCTC	2 cut(s)	318, 357
FaiI	YATR	3 cut(s)	402, 494, 606
FaqI	GGGAC	2 cut(s)	340, 363
FauI	CCCGC	2 cut(s)	91, 286
Fnu4HI	GCNGC	4 cut(s)	15, 486, 489, 619
FokI	GGATG	1 cut(s)	587
FriOI	GRGCYC	4 cut(s)	44, 83, 344, 434
Fsp4HI	GCNGC	4 cut(s)	15, 486, 489, 619
FspBI	CTAG	3 cut(s)	237, 263, 405
GlaI	GCGC	3 cut(s)	18, 617, 622
GluI	GCNGC	4 cut(s)	15, 486, 489, 619
GsuI	CTGGAG	1 cut(s)	28
HaeIII	GGCC	3 cut(s)	140, 271, 449
HapII	CCGG	6 cut(s)	53, 381, 397, 446, 563, 626
HgaI	GACGC	2 cut(s)	173, 339
HhaI	GCGC	3 cut(s)	19, 618, 623
Hin1I	GRCGYC	2 cut(s)	165, 350
Hin6I	GCGC	3 cut(s)	17, 616, 621
HinP1I	GCGC	3 cut(s)	17, 616, 621
HinfI	GANTC	1 cut(s)	182
HpaII	CCGG	6 cut(s)	53, 381, 397, 446, 563, 626
HphI	GGTGA	3 cut(s)	17, 88, 295
Hpy188I	TCNGA	4 cut(s)	72, 244, 318, 436
Hpy188III	TCNNGA	7 cut(s)	53, 59, 65, 123, 179, 237, 363
Hpy99I	CGWCG	4 cut(s)	120, 167, 234, 529
HpyAV	CCTTC	2 cut(s)	379, 415
HpyCH4III	ACNGT	3 cut(s)	23, 113, 230
HpyCH4IV	ACGT	1 cut(s)	518
HpyCH4V	TGCA	3 cut(s)	4, 418, 542
HpyF10VI	GCNNNNNNNGC	1 cut(s)	268
HpySE526I	ACGT	1 cut(s)	518
Hsp92I	GRCGYC	2 cut(s)	165, 350
HspAI	GCGC	3 cut(s)	17, 616, 621
Kpn2I	TCCGGA	1 cut(s)	52
Kzo9I	GATC	6 cut(s)	55, 61, 67, 119, 233, 239
LguI	GCTCTTC	1 cut(s)	332
LmnI	GCTCC	4 cut(s)	47, 429, 436, 628
Lsp1109I	GCAGC	3 cut(s)	472, 475, 605
LweI	GCATC	1 cut(s)	529
MabI	ACCWGGT	1 cut(s)	27
MaeI	CTAG	3 cut(s)	237, 263, 405
MaeII	ACGT	1 cut(s)	518
MaeIII	GTNAC	3 cut(s)	23, 301, 580
MalI	GATC	6 cut(s)	57, 63, 69, 121, 235, 241
MboI	GATC	6 cut(s)	55, 61, 67, 119, 233, 239
MboII	GAAGA	5 cut(s)	47, 85, 349, 484, 548
MflI	RGATCY	2 cut(s)	67, 239
MhlI	GDGCHC	4 cut(s)	44, 83, 344, 434
MluCI	AATT	3 cut(s)	457, 601, 611
MmeI	TCCRAC	1 cut(s)	407
MnlI	CCTC	4 cut(s)	319, 507, 540, 579
MroI	TCCGGA	1 cut(s)	52
MseI	TTAA	1 cut(s)	332
MspI	CCGG	6 cut(s)	53, 381, 397, 446, 563, 626
MspR9I	CCNGG	3 cut(s)	29, 224, 381
MteI	GCGCNGCGC	1 cut(s)	619
Mva1269I	GAATGC	1 cut(s)	224
MvaI	CCWGG	2 cut(s)	29, 224
MvnI	CGCG	1 cut(s)	60
MwoI	GCNNNNNNNGC	1 cut(s)	268
NciI	CCSGG	1 cut(s)	381
NdeII	GATC	6 cut(s)	55, 61, 67, 119, 233, 239
NlaIV	GGNNCC	2 cut(s)	328, 367
NmeAIII	GCCGAG	1 cut(s)	297
NmuCI	GTSAC	3 cut(s)	23, 301, 580
NruI	TCGCGA	1 cut(s)	60
PciSI	GCTCTTC	1 cut(s)	332
PcsI	WCGNNNNNNNCGW	2 cut(s)	524, 590
PctI	GAATGC	1 cut(s)	224
PfeI	GAWTC	1 cut(s)	182
PfoI	TCCNGGA	1 cut(s)	379
PkrI	GCNGC	4 cut(s)	16, 487, 490, 620
PpuMI	RGGWCCY	1 cut(s)	327
Psp124BI	GAGCTC	3 cut(s)	44, 344, 434
Psp5II	RGGWCCY	1 cut(s)	327
Psp6I	CCWGG	2 cut(s)	27, 222
PspGI	CCWGG	2 cut(s)	27, 222
PspN4I	GGNNCC	2 cut(s)	328, 367
PspPI	GGNCC	3 cut(s)	50, 226, 327
PspPPI	RGGWCCY	1 cut(s)	327
PsuI	RGATCY	2 cut(s)	67, 239
RruI	TCGCGA	1 cut(s)	60
SacI	GAGCTC	3 cut(s)	44, 344, 434
SapI	GCTCTTC	1 cut(s)	332
SaqAI	TTAA	1 cut(s)	332
SatI	GCNGC	4 cut(s)	15, 486, 489, 619
Sau3AI	GATC	6 cut(s)	55, 61, 67, 119, 233, 239
Sau96I	GGNCC	3 cut(s)	50, 226, 327
ScrFI	CCNGG	3 cut(s)	29, 224, 381
SduI	GDGCHC	4 cut(s)	44, 83, 344, 434
SexAI	ACCWGGT	1 cut(s)	27
SfaNI	GCATC	1 cut(s)	529
SinI	GGWCC	3 cut(s)	50, 226, 327
SpeI	ACTAGT	1 cut(s)	404
Sse9I	AATT	3 cut(s)	457, 601, 611
SsiI	CCGC	4 cut(s)	14, 84, 279, 306
SspMI	CTAG	3 cut(s)	237, 263, 405
SstI	GAGCTC	3 cut(s)	44, 344, 434
StyD4I	CCNGG	3 cut(s)	27, 222, 379
TaaI	ACNGT	3 cut(s)	23, 113, 230
TaiI	ACGT	1 cut(s)	521
TaqI	TCGA	5 cut(s)	118, 232, 527, 593, 609
TasI	AATT	3 cut(s)	457, 601, 611
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	1 cut(s)	332
Tru9I	TTAA	1 cut(s)	332
TscAI	CASTG	1 cut(s)	52
TseFI	GTSAC	3 cut(s)	23, 301, 580
TseI	GCWGC	3 cut(s)	485, 488, 618
Tsp45I	GTSAC	3 cut(s)	23, 301, 580
TspRI	CASTG	1 cut(s)	52
VpaK11BI	GGWCC	3 cut(s)	50, 226, 327
XbaI	TCTAGA	1 cut(s)	236
XcmI	CCANNNNNNNNNTGG	1 cut(s)	457
XspI	CTAG	3 cut(s)	237, 263, 405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.