Lignin degradation and detoxification of lignin-derived products
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Glyco_hydro_1 | PF00232 | 48 - 505 | 4.1e-145 | Glycosyl hydrolase family 1 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 597, 1449 |
| AccB1I | GGYRCC | 1 cut(s) | 685 |
| AciI | CCGC | 3 cut(s) | 329, 540, 584 |
| AclWI | GGATC | 4 cut(s) | 516, 635, 851, 1304 |
| AcsI | RAATTY | 4 cut(s) | 602, 733, 874, 1498 |
| AfaI | GTAC | 3 cut(s) | 91, 390, 938 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 658 |
| AflIII | ACRYGT | 1 cut(s) | 798 |
| AgsI | TTSAA | 6 cut(s) | 637, 1012, 1063, 1328, 1400, 1495 |
| AhlI | ACTAGT | 1 cut(s) | 92 |
| AjnI | CCWGG | 2 cut(s) | 259, 688 |
| AleI | CACNNNNGTG | 1 cut(s) | 851 |
| AluBI | AGCT | 7 cut(s) | 155, 176, 185, 788, 1080, 1102, 1125 |
| AluI | AGCT | 7 cut(s) | 155, 176, 185, 788, 1080, 1102, 1125 |
| Alw26I | GTCTC | 1 cut(s) | 987 |
| AlwI | GGATC | 4 cut(s) | 516, 635, 851, 1304 |
| Ama87I | CYCGRG | 1 cut(s) | 674 |
| AoxI | GGCC | 1 cut(s) | 576 |
| ApeKI | GCWGC | 6 cut(s) | 108, 203, 785, 788, 902, 1190 |
| ApoI | RAATTY | 4 cut(s) | 602, 733, 874, 1498 |
| AsiSI | GCGATCGC | 1 cut(s) | 115 |
| AspS9I | GGNCC | 5 cut(s) | 141, 224, 943, 1181, 1201 |
| AsuHPI | GGTGA | 5 cut(s) | 238, 620, 628, 971, 1146 |
| AvaI | CYCGRG | 1 cut(s) | 674 |
| AvaII | GGWCC | 5 cut(s) | 141, 224, 943, 1181, 1201 |
| BanI | GGYRCC | 1 cut(s) | 685 |
| BanII | GRGCYC | 1 cut(s) | 916 |
| BbvI | GCAGC | 6 cut(s) | 120, 190, 775, 797, 889, 1177 |
| BccI | CCATC | 3 cut(s) | 269, 927, 1448 |
| BceAI | ACGGC | 2 cut(s) | 733, 897 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 101, 135, 881, 915 |
| BciT130I | CCWGG | 2 cut(s) | 261, 690 |
| BciVI | GTATCC | 3 cut(s) | 232, 1096, 1361 |
| BcoDI | GTCTC | 1 cut(s) | 987 |
| BcuI | ACTAGT | 1 cut(s) | 92 |
| BfaI | CTAG | 5 cut(s) | 93, 384, 917, 1077, 1103 |
| BfmI | CTRYAG | 1 cut(s) | 789 |
| BfuI | GTATCC | 3 cut(s) | 232, 1096, 1361 |
| BglII | AGATCT | 1 cut(s) | 980 |
| BisI | GCNGC | 7 cut(s) | 109, 204, 541, 786, 789, 903, 1191 |
| BlsI | GCNGC | 7 cut(s) | 110, 205, 542, 787, 790, 904, 1192 |
| BmcAI | AGTACT | 2 cut(s) | 91, 390 |
| Bme1390I | CCNGG | 2 cut(s) | 261, 690 |
| Bme18I | GGWCC | 5 cut(s) | 141, 224, 943, 1181, 1201 |
| BmeT110I | CYCGRG | 1 cut(s) | 674 |
| BmgT120I | GGNCC | 5 cut(s) | 141, 224, 943, 1181, 1201 |
| BmiI | GGNNCC | 3 cut(s) | 687, 747, 945 |
| BmrFI | CCNGG | 2 cut(s) | 261, 690 |
| BmrI | ACTGGG | 1 cut(s) | 514 |
| BmsI | GCATC | 3 cut(s) | 316, 1233, 1440 |
| BmuI | ACTGGG | 1 cut(s) | 514 |
| BpmI | CTGGAG | 1 cut(s) | 747 |
| BsaAI | YACGTR | 1 cut(s) | 1084 |
| BsaBI | GATNNNNATC | 1 cut(s) | 306 |
| BsaI | GGTCTC | 1 cut(s) | 987 |
| BsaWI | WCCGGW | 1 cut(s) | 138 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 658 |
| Bse1I | ACTGG | 5 cut(s) | 144, 190, 509, 629, 730 |
| Bse3DI | GCAATG | 1 cut(s) | 289 |
| Bse8I | GATNNNNATC | 1 cut(s) | 306 |
| BseBI | CCWGG | 2 cut(s) | 261, 690 |
| BseGI | GGATG | 2 cut(s) | 361, 938 |
| BseJI | GATNNNNATC | 1 cut(s) | 306 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 658 |
| BseMI | GCAATG | 1 cut(s) | 289 |
| BseMII | CTCAG | 3 cut(s) | 95, 1209, 1494 |
| BseNI | ACTGG | 5 cut(s) | 144, 190, 509, 629, 730 |
| BseXI | GCAGC | 6 cut(s) | 120, 190, 775, 797, 889, 1177 |
| BseYI | CCCAGC | 1 cut(s) | 1098 |
| BsgI | GTGCAG | 1 cut(s) | 706 |
| Bsh1285I | CGRYCG | 1 cut(s) | 115 |
| BshFI | GGCC | 1 cut(s) | 578 |
| BshNI | GGYRCC | 1 cut(s) | 685 |
| BsiEI | CGRYCG | 1 cut(s) | 115 |
| BsiHKCI | CYCGRG | 1 cut(s) | 674 |
| BsiSI | CCGG | 1 cut(s) | 139 |
| BslFI | GGGAC | 1 cut(s) | 808 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 658 |
| BsmAI | GTCTC | 1 cut(s) | 987 |
| BsmFI | GGGAC | 1 cut(s) | 808 |
| BsnI | GGCC | 1 cut(s) | 578 |
| Bso31I | GGTCTC | 1 cut(s) | 987 |
| BsoBI | CYCGRG | 1 cut(s) | 674 |
| Bsp1286I | GDGCHC | 1 cut(s) | 916 |
| Bsp143I | GATC | 8 cut(s) | 100, 112, 508, 610, 627, 843, 980, 1309 |
| BspACI | CCGC | 3 cut(s) | 329, 540, 584 |
| BspANI | GGCC | 1 cut(s) | 578 |
| BspCNI | CTCAG | 3 cut(s) | 96, 1208, 1493 |
| BspLI | GGNNCC | 3 cut(s) | 687, 747, 945 |
| BspMAI | CTGCAG | 1 cut(s) | 793 |
| BspPI | GGATC | 4 cut(s) | 516, 635, 851, 1304 |
| BspT107I | GGYRCC | 1 cut(s) | 685 |
| BspTNI | GGTCTC | 1 cut(s) | 987 |
| BsrDI | GCAATG | 1 cut(s) | 289 |
| BsrI | ACTGG | 5 cut(s) | 144, 190, 509, 629, 730 |
| BssMI | GATC | 8 cut(s) | 100, 112, 508, 610, 627, 843, 980, 1309 |
| Bst2UI | CCWGG | 2 cut(s) | 261, 690 |
| Bst4CI | ACNGT | 1 cut(s) | 1420 |
| Bst6I | CTCTTC | 1 cut(s) | 503 |
| BstBAI | YACGTR | 1 cut(s) | 1084 |
| BstC8I | GCNNGC | 1 cut(s) | 1123 |
| BstDEI | CTNAG | 6 cut(s) | 104, 548, 969, 1005, 1195, 1480 |
| BstF5I | GGATG | 2 cut(s) | 361, 938 |
| BstKTI | GATC | 8 cut(s) | 103, 115, 511, 613, 630, 846, 983, 1312 |
| BstMAI | GTCTC | 1 cut(s) | 987 |
| BstMBI | GATC | 8 cut(s) | 100, 112, 508, 610, 627, 843, 980, 1309 |
| BstMCI | CGRYCG | 1 cut(s) | 115 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 114, 182, 532, 785, 911 |
| BstNI | CCWGG | 2 cut(s) | 261, 690 |
| BstNSI | RCATGY | 1 cut(s) | 802 |
| BstSCI | CCNGG | 2 cut(s) | 259, 688 |
| BstSFI | CTRYAG | 1 cut(s) | 789 |
| BstSNI | TACGTA | 1 cut(s) | 1084 |
| BstV1I | GCAGC | 6 cut(s) | 120, 190, 775, 797, 889, 1177 |
| BstX2I | RGATCY | 2 cut(s) | 508, 980 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 234 |
| BstYI | RGATCY | 2 cut(s) | 508, 980 |
| BsuI | GTATCC | 3 cut(s) | 232, 1096, 1361 |
| BsuRI | GGCC | 1 cut(s) | 578 |
| BtgZI | GCGATG | 1 cut(s) | 296 |
| BtsCI | GGATG | 2 cut(s) | 361, 938 |
| BtsIMutI | CAGTG | 3 cut(s) | 502, 622, 723 |
| Cac8I | GCNNGC | 1 cut(s) | 1123 |
| Cfr13I | GGNCC | 5 cut(s) | 141, 224, 943, 1181, 1201 |
| Csp6I | GTAC | 3 cut(s) | 90, 389, 937 |
| CviQI | GTAC | 3 cut(s) | 90, 389, 937 |
| DdeI | CTNAG | 6 cut(s) | 104, 548, 969, 1005, 1195, 1480 |
| DpnI | GATC | 8 cut(s) | 102, 114, 510, 612, 629, 845, 982, 1311 |
| DpnII | GATC | 8 cut(s) | 100, 112, 508, 610, 627, 843, 980, 1309 |
| Eam1104I | CTCTTC | 1 cut(s) | 503 |
| EarI | CTCTTC | 1 cut(s) | 503 |
| Eco105I | TACGTA | 1 cut(s) | 1084 |
| Eco147I | AGGCCT | 1 cut(s) | 578 |
| Eco24I | GRGCYC | 1 cut(s) | 916 |
| Eco31I | GGTCTC | 1 cut(s) | 987 |
| Eco47I | GGWCC | 5 cut(s) | 141, 224, 943, 1181, 1201 |
| Eco88I | CYCGRG | 1 cut(s) | 674 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1201 |
| EcoRI | GAATTC | 1 cut(s) | 733 |
| EcoRII | CCWGG | 2 cut(s) | 259, 688 |
| EcoT38I | GRGCYC | 1 cut(s) | 916 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1443, 1475 |
| FaqI | GGGAC | 1 cut(s) | 808 |
| FauI | CCCGC | 1 cut(s) | 322 |
| Fnu4HI | GCNGC | 7 cut(s) | 109, 204, 541, 786, 789, 903, 1191 |
| FokI | GGATG | 2 cut(s) | 368, 945 |
| FriOI | GRGCYC | 1 cut(s) | 916 |
| Fsp4HI | GCNGC | 7 cut(s) | 109, 204, 541, 786, 789, 903, 1191 |
| FspBI | CTAG | 5 cut(s) | 93, 384, 917, 1077, 1103 |
| GluI | GCNGC | 7 cut(s) | 109, 204, 541, 786, 789, 903, 1191 |
| GsaI | CCCAGC | 1 cut(s) | 1102 |
| GsuI | CTGGAG | 1 cut(s) | 747 |
| HaeIII | GGCC | 1 cut(s) | 578 |
| HapII | CCGG | 1 cut(s) | 139 |
| HincII | GTYRAC | 2 cut(s) | 796, 1320 |
| HindII | GTYRAC | 2 cut(s) | 796, 1320 |
| HinfI | GANTC | 5 cut(s) | 302, 672, 821, 1136, 1170 |
| HpaI | GTTAAC | 2 cut(s) | 796, 1320 |
| HpaII | CCGG | 1 cut(s) | 139 |
| HphI | GGTGA | 5 cut(s) | 238, 620, 628, 971, 1146 |
| Hpy166II | GTNNAC | 4 cut(s) | 361, 421, 796, 1320 |
| Hpy188I | TCNGA | 7 cut(s) | 105, 992, 1058, 1090, 1198, 1218, 1229 |
| Hpy188III | TCNNGA | 5 cut(s) | 15, 384, 818, 1012, 1495 |
| Hpy8I | GTNNAC | 4 cut(s) | 361, 421, 796, 1320 |
| Hpy99I | CGWCG | 1 cut(s) | 745 |
| HpyAV | CCTTC | 5 cut(s) | 191, 334, 422, 1169, 1543 |
| HpyCH4III | ACNGT | 1 cut(s) | 1420 |
| HpyCH4IV | ACGT | 1 cut(s) | 1083 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 114, 182, 532, 785, 911 |
| HpyF3I | CTNAG | 6 cut(s) | 104, 548, 969, 1005, 1195, 1480 |
| HpySE526I | ACGT | 1 cut(s) | 1083 |
| KspAI | GTTAAC | 2 cut(s) | 796, 1320 |
| Kzo9I | GATC | 8 cut(s) | 100, 112, 508, 610, 627, 843, 980, 1309 |
| LmnI | GCTCC | 1 cut(s) | 745 |
| Lsp1109I | GCAGC | 6 cut(s) | 120, 190, 775, 797, 889, 1177 |
| LweI | GCATC | 3 cut(s) | 316, 1233, 1440 |
| MaeI | CTAG | 5 cut(s) | 93, 384, 917, 1077, 1103 |
| MaeII | ACGT | 1 cut(s) | 1083 |
| MaeIII | GTNAC | 7 cut(s) | 490, 665, 757, 959, 1152, 1412, 1576 |
| MalI | GATC | 8 cut(s) | 102, 114, 510, 612, 629, 845, 982, 1311 |
| MboI | GATC | 8 cut(s) | 100, 112, 508, 610, 627, 843, 980, 1309 |
| MboII | GAAGA | 3 cut(s) | 335, 490, 503 |
| MfeI | CAATTG | 1 cut(s) | 645 |
| MflI | RGATCY | 2 cut(s) | 508, 980 |
| MhlI | GDGCHC | 1 cut(s) | 916 |
| MlyI | GAGTC | 3 cut(s) | 666, 830, 1130 |
| MmeI | TCCRAC | 2 cut(s) | 970, 1113 |
| MseI | TTAA | 6 cut(s) | 33, 795, 1305, 1319, 1461, 1582 |
| MslI | CAYNNNNRTG | 2 cut(s) | 851, 1530 |
| MspA1I | CMGCKG | 2 cut(s) | 155, 788 |
| MspI | CCGG | 1 cut(s) | 139 |
| MspR9I | CCNGG | 2 cut(s) | 261, 690 |
| MunI | CAATTG | 1 cut(s) | 645 |
| MvaI | CCWGG | 2 cut(s) | 261, 690 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 114, 182, 532, 785, 911 |
| NdeII | GATC | 8 cut(s) | 100, 112, 508, 610, 627, 843, 980, 1309 |
| NlaIV | GGNNCC | 3 cut(s) | 687, 747, 945 |
| NmuCI | GTSAC | 5 cut(s) | 490, 757, 959, 1152, 1576 |
| NspI | RCATGY | 1 cut(s) | 802 |
| OliI | CACNNNNGTG | 1 cut(s) | 851 |
| PceI | AGGCCT | 1 cut(s) | 578 |
| PciI | ACATGT | 1 cut(s) | 798 |
| PfeI | GAWTC | 2 cut(s) | 302, 1170 |
| PflFI | GACNNNGTC | 1 cut(s) | 1150 |
| PkrI | GCNGC | 7 cut(s) | 110, 205, 542, 787, 790, 904, 1192 |
| Ple19I | CGATCG | 1 cut(s) | 115 |
| PleI | GAGTC | 3 cut(s) | 666, 829, 1130 |
| PpsI | GAGTC | 3 cut(s) | 666, 829, 1130 |
| Ppu21I | YACGTR | 1 cut(s) | 1084 |
| PpuMI | RGGWCCY | 1 cut(s) | 1201 |
| PscI | ACATGT | 1 cut(s) | 798 |
| PsiI | TTATAA | 2 cut(s) | 597, 1449 |
| Psp5II | RGGWCCY | 1 cut(s) | 1201 |
| Psp6I | CCWGG | 2 cut(s) | 259, 688 |
| PspFI | CCCAGC | 1 cut(s) | 1098 |
| PspGI | CCWGG | 2 cut(s) | 259, 688 |
| PspN4I | GGNNCC | 3 cut(s) | 687, 747, 945 |
| PspPI | GGNCC | 5 cut(s) | 141, 224, 943, 1181, 1201 |
| PspPPI | RGGWCCY | 1 cut(s) | 1201 |
| PstI | CTGCAG | 1 cut(s) | 793 |
| PsuI | RGATCY | 2 cut(s) | 508, 980 |
| PsyI | GACNNNGTC | 1 cut(s) | 1150 |
| PvuI | CGATCG | 1 cut(s) | 115 |
| PvuII | CAGCTG | 2 cut(s) | 155, 788 |
| RgaI | GCGATCGC | 1 cut(s) | 115 |
| RsaI | GTAC | 3 cut(s) | 91, 390, 938 |
| RsaNI | GTAC | 3 cut(s) | 90, 389, 937 |
| RseI | CAYNNNNRTG | 2 cut(s) | 851, 1530 |
| SaqAI | TTAA | 6 cut(s) | 33, 795, 1305, 1319, 1461, 1582 |
| SatI | GCNGC | 7 cut(s) | 109, 204, 541, 786, 789, 903, 1191 |
| Sau3AI | GATC | 8 cut(s) | 100, 112, 508, 610, 627, 843, 980, 1309 |
| Sau96I | GGNCC | 5 cut(s) | 141, 224, 943, 1181, 1201 |
| ScaI | AGTACT | 2 cut(s) | 91, 390 |
| SchI | GAGTC | 3 cut(s) | 666, 830, 1130 |
| ScrFI | CCNGG | 2 cut(s) | 261, 690 |
| SduI | GDGCHC | 1 cut(s) | 916 |
| SfaAI | GCGATCGC | 1 cut(s) | 115 |
| SfaNI | GCATC | 3 cut(s) | 316, 1233, 1440 |
| SfcI | CTRYAG | 1 cut(s) | 789 |
| SgfI | GCGATCGC | 1 cut(s) | 115 |
| SinI | GGWCC | 5 cut(s) | 141, 224, 943, 1181, 1201 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 851, 1530 |
| SnaBI | TACGTA | 1 cut(s) | 1084 |
| SpeI | ACTAGT | 1 cut(s) | 92 |
| SseBI | AGGCCT | 1 cut(s) | 578 |
| SsiI | CCGC | 3 cut(s) | 329, 540, 584 |
| SspI | AATATT | 1 cut(s) | 37 |
| SspMI | CTAG | 5 cut(s) | 93, 384, 917, 1077, 1103 |
| StuI | AGGCCT | 1 cut(s) | 578 |
| StyD4I | CCNGG | 2 cut(s) | 259, 688 |
| TaaI | ACNGT | 1 cut(s) | 1420 |
| TaiI | ACGT | 1 cut(s) | 1086 |
| TaqI | TCGA | 2 cut(s) | 1423, 1443 |
| TaqII | GACCGA | 1 cut(s) | 1011 |
| TatI | WGTACW | 2 cut(s) | 89, 388 |
| TauI | GCSGC | 1 cut(s) | 543 |
| TfiI | GAWTC | 2 cut(s) | 302, 1170 |
| Tru1I | TTAA | 6 cut(s) | 33, 795, 1305, 1319, 1461, 1582 |
| Tru9I | TTAA | 6 cut(s) | 33, 795, 1305, 1319, 1461, 1582 |
| TscAI | CASTG | 3 cut(s) | 509, 629, 730 |
| TseFI | GTSAC | 5 cut(s) | 490, 757, 959, 1152, 1576 |
| TseI | GCWGC | 6 cut(s) | 108, 203, 785, 788, 902, 1190 |
| Tsp45I | GTSAC | 5 cut(s) | 490, 757, 959, 1152, 1576 |
| TspDTI | ATGAA | 7 cut(s) | 168, 210, 225, 294, 353, 474, 1548 |
| TspGWI | ACGGA | 2 cut(s) | 684, 758 |
| TspRI | CASTG | 3 cut(s) | 509, 629, 730 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1150 |
| VpaK11BI | GGWCC | 5 cut(s) | 141, 224, 943, 1181, 1201 |
| XapI | RAATTY | 4 cut(s) | 602, 733, 874, 1498 |
| XbaI | TCTAGA | 1 cut(s) | 383 |
| XceI | RCATGY | 1 cut(s) | 802 |
| XspI | CTAG | 5 cut(s) | 93, 384, 917, 1077, 1103 |
| ZrmI | AGTACT | 2 cut(s) | 91, 390 |