Rroxscaffold_6G00407620

Lignin degradation and detoxification of lignin-derived products

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
30290521 .. 30296050
5530 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00407620.1

Sequence Viewer

Length: 1701 bp
ATGTGGTCTGCTAAGAAGTGGAAATCAGCACTTCAGGCTTTATCATTTCTACTAGTACTCTTCCTTCATCGCCAAGCATCAGCCGATTATAATTGGGTCGTGAAAGAATCCACATATACAAGGCTGTGCAGCACCAAGTCAATCTTGACAGTTAATGGAAAATTTCCGGGACCAGTTTTACGAGCTTATGCAGGAGATACTGTCTATGTCAATGTTCATAACAGAGGCAGATACAACATCACTATTCACTGGCATGGAGTCAAGCAACCGAGGAATCCATGGTCTGATGGTCCTGAATACATCACACAATGTGGTATTCAACCGGGTGGGAGTTTCAGGCAGAAGATCATATTCTCTATTGAGGAAGGAACCCTTTGGTGGCACGCTCATAGTGATTGGTCCCGGGCGACGGTTCATGGAGCAATTTTTGTCTATCCAAAACCAGGAACTAGCTACCCTTTTCCCAAGCCCTATGCTGAAGTTCCCATAATATTAGGTGAGTGGTGGAAAAGTGATGTAATGGAGGTACTTGATGAATTTGTTAGAACCGGAGGAACTCCCAATGTTTCTGATGCTTACACCATCAATGGTCAACCAGGAGACCTCTATCCCTGCTCAAAATCAGAAACATTCAAACTCTCTGTGGACCAAAACAAGACCCATCTGCTCCGAATAATCAACGCTGCCATGAACAGTATCCTTTTCTTCTCAGTCGCAAACCATAACCTGACAGTGGTCGCAGCAGACGCAGCCTACACCGCACCAATCTCAACACCCTACATCACAATATCTCCTGGACAAACCATTGATGCCTTGTTGTTCACAGACCAACAACCTGGTCGTTATTACATGGCTGCTAGGGCTTACCAAGGTAACCTAGCGATTGGTTTTGACAACACCACAACCACATCAATAGTTGAATACAAAGATGGCAATGGAAATGGTAAAACTGCTCCATTATTTCCCTACCTTCCTTACTATAACAACACGAATGCAGCCTTTGGCTTTTTCAATAGCCTTAAAAGCCTAGACATTAAGCAAACCGATGTCGTAAAAACCACCACCACTCGAATAGTTTCAACAGTATCGGTGAACACACTCCCTTGCCTTGGAAATCAAACCTGTGAAGGACCAAATGGGACGCGATTAGCTGCCAGTATGAACAACATAAGCTTTGTGGATCCCAGAGTAGATATATTACAAGCTTATTATTACTATATCAAAGGGGTTTATAAAGGGGGTTTCCCAGATTTTCCACCGTTGATTTTTGACTTCACAGCTGAGGACTTCCCTCTGATATTGGAAATACCAGAGAGGGACACAAAAGTGAAGGTTTTGGAATATGGATCGGATGTGGAAATTGTTTTTCAAAACACAAATTTAGTGGCTGGGATAGATCATCCCATACATCTTCATGGCCATAGCTTCCACATTGTTGGAACTGGCTTTGGGAATTTTGATGTAAAAAAGGACCCATTGAGCTTCAATCTTGTTGATCCTCCTCTTAGGAACACAGTTACTGTGCCCTTAAGTGGTTGGGCCGCTGTCAGATTCAAGGCCGGAAATCCTGGAGTGTGGTATTTACACTGTCATCTTGAACGTCACCTAACATGGGGAATGCACACCGTCTTCATCGTAAAGAATGGAAAACACCCAAATGAAACGTTGCTGCCTCCTCCACCAGACATGCCGCCGTGTTGA

Protein Analysis

566

Amino Acids

63.18

Weight (kDa)

7.67

Isoelectric Point (pI)

25.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 34 - 147 1.4e-37 Multicopper oxidase
Cu-oxidase PF00394 160 - 309 5.5e-40 Multicopper oxidase
Cu-oxidase_2 PF07731 437 - 549 6.9e-39 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000359)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48100
fragaria_vesca FvH4_1g24380 FvH4_2g05800 FvH4_5g30730
malus_domestica MD01G1234900.v1.1 MD01G1235100.v1.1 MD01G1235200.v1.1 MD07G1307400.v1.1 MD07G1308000.v1.1 MD10G1042300.v1.1 MD10G1042400.v1.1 MD10G1042500.v1.1 MD10G1042700.v1.1
prunus_persica Prupe.2G325200_v2.0.a1 Prupe.6G242000_v2.0.a1 Prupe.8G046800_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1
pyrus_communis pycom01g24320 pycom01g24330 pycom07g28020 pycom10g02950 pycom17g03690
rosa_chinensis RchiOBHm_Chr1g0384031 RchiOBHm_Chr2g0120941 RchiOBHm_Chr2g0120971 RchiOBHm_Chr2g0121051 RchiOBHm_Chr2g0121181 RchiOBHm_Chr2g0121211 RchiOBHm_Chr3g0473931 RchiOBHm_Chr3g0473941 RchiOBHm_Chr6g0257941 RchiOBHm_Chr6g0284781
rosa_laevigata RLG00000008541 RLG00000014737 RLG00000018604 RLG00000018607 RLG00000018608 RLG00000018610 RLG00000018611 RLG00000018613 RLG00000023967 RLG00000023970 RLG00000026078 RLG00000035183
rosa_multiflora Rmu_sc0000079.1_g000043 Rmu_sc0000079.1_g000062 Rmu_sc0000079.1_g000069 Rmu_sc0000621.1_g000019 Rmu_sc0000621.1_g000025 Rmu_sc0000621.1_g000041 Rmu_sc0000652.1_g000018 Rmu_sc0002414.1_g000030 Rmu_sc0002414.1_g000033 Rmu_sc0002843.1_g000016 Rmu_sc0005137.1_g000035 Rmu_sc0005139.1_g000021
rosa_roxburghii Rroxscaffold_2G00122530 Rroxscaffold_2G00122570 Rroxscaffold_2G00122580 Rroxscaffold_2G00122650 Rroxscaffold_4G00277080 Rroxscaffold_6G00407610 Rroxscaffold_6G00407620 Rroxscaffold_7G00209050
rosa_rugosa Rorug01G0444300 Rorug02G0232700 Rorug02G0232700 Rorug02G0232900 Rorug03G0137100 Rorug05G0565600 Rorug05G0566500
rosa_samantha Rh1BG427300 Rh1CG440100 Rh2CG278100 Rh2CG278200 Rh2CG278700 Rh2CG278800 Rh2CG279100 Rh2DG314200 Rh2DG314300 Rh2DG314600 Rh3AG187200 Rh3DG211700 Rh3DG211800 Rh5AG356600 Rh6BG078000 Rh6BG078700 Rh6CG073300 Rh6DG070300 Rh6DG190200 Rh6DG274700 Rh7BG365900
rosa_wichuraiana Rw0G018400 Rw1G040270 Rw2G023160 Rw2G023170 Rw2G023190 Rw2G023200 Rw2G023220 Rw2G023230 Rw3G017140 Rw3G017150 Rw4G012840 Rw6G007580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 90, 1233
AccII CGCG 1 cut(s) 1144
AciI CCGC 3 cut(s) 759, 1542, 1691
AclI AACGTT 1 cut(s) 1664
AclWI GGATC 4 cut(s) 1175, 1188, 1354, 1490
AcoI YGGCCR 1 cut(s) 1417
AcsI RAATTY 4 cut(s) 161, 536, 1378, 1453
AcuI CTGAAG 2 cut(s) 17, 498
AdeI CACNNNGTG 1 cut(s) 311
AfaI GTAC 2 cut(s) 57, 528
AfiI CCNNNNNNNGG 7 cut(s) 378, 409, 443, 733, 1109, 1532, 1612
AflII CTTAAG 1 cut(s) 1528
AgsI TTSAA 9 cut(s) 320, 634, 920, 1012, 1080, 1370, 1486, 1555, 1598
AhlI ACTAGT 1 cut(s) 52
AjnI CCWGG 5 cut(s) 442, 595, 793, 835, 1567
AleI CACNNNNGTG 1 cut(s) 1325
AluBI AGCT 8 cut(s) 185, 453, 1151, 1173, 1205, 1280, 1425, 1482
AluI AGCT 8 cut(s) 185, 453, 1151, 1173, 1205, 1280, 1425, 1482
Alw26I GTCTC 1 cut(s) 594
AlwI GGATC 4 cut(s) 1175, 1188, 1354, 1490
AlwNI CAGNNNCTG 1 cut(s) 1520
Ama87I CYCGRG 1 cut(s) 402
AoxI GGCC 3 cut(s) 1417, 1539, 1557
ApeKI GCWGC 8 cut(s) 129, 683, 740, 749, 854, 995, 1151, 1669
ApoI RAATTY 4 cut(s) 161, 536, 1378, 1453
Asp700I GAANNNNTTC 1 cut(s) 1075
AspS9I GGNCC 7 cut(s) 170, 290, 399, 646, 1130, 1471, 1539
AsuC2I CCSGG 4 cut(s) 168, 324, 403, 404
AsuHPI GGTGA 3 cut(s) 509, 1102, 1595
AvaI CYCGRG 1 cut(s) 402
AvaII GGWCC 6 cut(s) 170, 290, 399, 646, 1130, 1471
BaeGI GKGCMC 1 cut(s) 1527
BalI TGGCCA 1 cut(s) 1419
BamHI GGATCC 1 cut(s) 1180
BarI GAAGNNNNNNTAC 2 cut(s) 48, 80
BbsI GAAGAC 1 cut(s) 1621
BbvCI CCTCAGC 1 cut(s) 1281
BbvI GCAGC 8 cut(s) 141, 670, 752, 761, 841, 1007, 1138, 1656
BccI CCATC 4 cut(s) 281, 590, 669, 923
BceAI ACGGC 1 cut(s) 1678
BciT130I CCWGG 5 cut(s) 444, 597, 795, 837, 1569
BciVI GTATCC 1 cut(s) 707
BcnI CCSGG 4 cut(s) 168, 324, 403, 404
BcoDI GTCTC 1 cut(s) 594
BcuI ACTAGT 1 cut(s) 52
BfaI CTAG 5 cut(s) 53, 450, 858, 878, 1028
BfrI CTTAAG 1 cut(s) 1528
BfuI GTATCC 1 cut(s) 707
BmcAI AGTACT 1 cut(s) 57
Bme1390I CCNGG 9 cut(s) 168, 324, 403, 404, 444, 597, 795, 837, 1569
Bme18I GGWCC 6 cut(s) 170, 290, 399, 646, 1130, 1471
BmeT110I CYCGRG 1 cut(s) 402
BmgT120I GGNCC 7 cut(s) 170, 290, 399, 646, 1130, 1471, 1539
BmiI GGNNCC 5 cut(s) 171, 370, 401, 1182, 1473
BmrFI CCNGG 9 cut(s) 168, 324, 403, 404, 444, 597, 795, 837, 1569
BmsI GCATC 3 cut(s) 86, 562, 799
BoxI GACNNNNGTC 1 cut(s) 734
BpiI GAAGAC 1 cut(s) 1621
BpmI CTGGAG 1 cut(s) 1590
Bpu10I CCTNAGC 1 cut(s) 1281
BpuMI CCSGG 4 cut(s) 168, 324, 403, 404
BsaI GGTCTC 1 cut(s) 594
BsaJI CCNNGG 5 cut(s) 269, 278, 402, 868, 1108
BsaWI WCCGGW 1 cut(s) 548
BsaXI ACNNNNNCTCC 4 cut(s) 186, 216, 775, 805
Bsc4I CCNNNNNNNGG 7 cut(s) 378, 409, 443, 733, 1109, 1532, 1612
Bse1I ACTGG 4 cut(s) 173, 254, 1155, 1447
Bse3DI GCAATG 1 cut(s) 940
BseBI CCWGG 5 cut(s) 444, 597, 795, 837, 1569
BseDI CCNNGG 5 cut(s) 269, 278, 402, 868, 1108
BseGI GGATG 2 cut(s) 1357, 1399
BseLI CCNNNNNNNGG 7 cut(s) 378, 409, 443, 733, 1109, 1532, 1612
BseMI GCAATG 1 cut(s) 940
BseMII CTCAG 2 cut(s) 723, 1272
BseNI ACTGG 4 cut(s) 173, 254, 1155, 1447
BseRI GAGGAG 2 cut(s) 1491, 1665
BseSI GKGCMC 1 cut(s) 1527
BseXI GCAGC 8 cut(s) 141, 670, 752, 761, 841, 1007, 1138, 1656
BseYI CCCAGC 1 cut(s) 1388
BsgI GTGCAG 1 cut(s) 148
Bsh1236I CGCG 1 cut(s) 1144
BshFI GGCC 3 cut(s) 1419, 1541, 1559
BsiHKCI CYCGRG 1 cut(s) 402
BsiSI CCGG 5 cut(s) 167, 323, 403, 549, 1560
BslFI GGGAC 4 cut(s) 183, 385, 1153, 1331
BslI CCNNNNNNNGG 7 cut(s) 378, 409, 443, 733, 1109, 1532, 1612
BsmAI GTCTC 1 cut(s) 594
BsmFI GGGAC 4 cut(s) 183, 385, 1153, 1331
BsmI GAATGC 2 cut(s) 997, 1623
BsnI GGCC 3 cut(s) 1419, 1541, 1559
Bso31I GGTCTC 1 cut(s) 594
BsoBI CYCGRG 1 cut(s) 402
Bsp1286I GDGCHC 1 cut(s) 1527
Bsp143I GATC 5 cut(s) 345, 1180, 1346, 1396, 1495
Bsp19I CCATGG 1 cut(s) 278
BspACI CCGC 3 cut(s) 759, 1542, 1691
BspANI GGCC 3 cut(s) 1419, 1541, 1559
BspCNI CTCAG 2 cut(s) 722, 1273
BspFNI CGCG 1 cut(s) 1144
BspLI GGNNCC 5 cut(s) 171, 370, 401, 1182, 1473
BspPI GGATC 4 cut(s) 1175, 1188, 1354, 1490
BspTI CTTAAG 1 cut(s) 1528
BspTNI GGTCTC 1 cut(s) 594
BsrDI GCAATG 1 cut(s) 940
BsrI ACTGG 4 cut(s) 173, 254, 1155, 1447
BssECI CCNNGG 5 cut(s) 269, 278, 402, 868, 1108
BssMI GATC 5 cut(s) 345, 1180, 1346, 1396, 1495
BssT1I CCWWGG 3 cut(s) 278, 868, 1108
Bst2UI CCWGG 5 cut(s) 444, 597, 795, 837, 1569
Bst6I CTCTTC 1 cut(s) 65
BstAFI CTTAAG 1 cut(s) 1528
BstC8I GCNNGC 1 cut(s) 384
BstDEI CTNAG 4 cut(s) 12, 709, 1281, 1505
BstDSI CCRYGG 1 cut(s) 278
BstEII GGTNACC 1 cut(s) 872
BstF5I GGATG 2 cut(s) 1357, 1399
BstFNI CGCG 1 cut(s) 1144
BstKTI GATC 5 cut(s) 348, 1183, 1349, 1399, 1498
BstMAI GTCTC 1 cut(s) 594
BstMBI GATC 5 cut(s) 345, 1180, 1346, 1396, 1495
BstMWI GCNNNNNNNGC 6 cut(s) 35, 746, 749, 758, 860, 1023
BstNI CCWGG 5 cut(s) 444, 597, 795, 837, 1569
BstNSI RCATGY 1 cut(s) 1690
BstPAI GACNNNNGTC 1 cut(s) 734
BstPI GGTNACC 1 cut(s) 872
BstSCI CCNGG 9 cut(s) 166, 322, 401, 402, 442, 595, 793, 835, 1567
BstSLI GKGCMC 1 cut(s) 1527
BstUI CGCG 1 cut(s) 1144
BstV1I GCAGC 8 cut(s) 141, 670, 752, 761, 841, 1007, 1138, 1656
BstV2I GAAGAC 1 cut(s) 1621
BstX2I RGATCY 1 cut(s) 1180
BstXI CCANNNNNNTGG 2 cut(s) 836, 1436
BstYI RGATCY 1 cut(s) 1180
BsuI GTATCC 1 cut(s) 707
BsuRI GGCC 3 cut(s) 1419, 1541, 1559
BtgI CCRYGG 1 cut(s) 278
BtgZI GCGATG 1 cut(s) 53
BtsCI GGATG 2 cut(s) 1357, 1399
BtsIMutI CAGTG 3 cut(s) 247, 738, 1585
Cac8I GCNNGC 1 cut(s) 384
CaiI CAGNNNCTG 1 cut(s) 1520
Cfr13I GGNCC 7 cut(s) 170, 290, 399, 646, 1130, 1471, 1539
Cfr9I CCCGGG 1 cut(s) 402
CseI GACGC 2 cut(s) 755, 1150
CsiI ACCWGGT 1 cut(s) 835
Csp6I GTAC 2 cut(s) 56, 527
CspCI CAANNNNNGTGG 2 cut(s) 1365, 1400
CviAII CATG 8 cut(s) 254, 279, 416, 688, 850, 1415, 1611, 1687
CviQI GTAC 2 cut(s) 56, 527
DdeI CTNAG 4 cut(s) 12, 709, 1281, 1505
DpnI GATC 5 cut(s) 347, 1182, 1348, 1398, 1497
DpnII GATC 5 cut(s) 345, 1180, 1346, 1396, 1495
DraIII CACNNNGTG 1 cut(s) 311
EaeI YGGCCR 1 cut(s) 1417
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
Eco130I CCWWGG 3 cut(s) 278, 868, 1108
Eco31I GGTCTC 1 cut(s) 594
Eco47I GGWCC 6 cut(s) 170, 290, 399, 646, 1130, 1471
Eco57I CTGAAG 2 cut(s) 17, 498
Eco88I CYCGRG 1 cut(s) 402
Eco91I GGTNACC 1 cut(s) 872
EcoO109I RGGNCCY 1 cut(s) 1471
EcoO65I GGTNACC 1 cut(s) 872
EcoRII CCWGG 5 cut(s) 442, 595, 793, 835, 1567
EcoT14I CCWWGG 3 cut(s) 278, 868, 1108
ErhI CCWWGG 3 cut(s) 278, 868, 1108
FaeI CATG 8 cut(s) 257, 282, 419, 691, 853, 1418, 1614, 1690
FalI AAGNNNNNCTT 4 cut(s) 128, 160, 357, 389
FaqI GGGAC 4 cut(s) 183, 385, 1153, 1331
FatI CATG 8 cut(s) 253, 278, 415, 687, 849, 1414, 1610, 1686
FokI GGATG 2 cut(s) 1364, 1386
FspBI CTAG 5 cut(s) 53, 450, 858, 878, 1028
GsaI CCCAGC 1 cut(s) 1392
GsuI CTGGAG 1 cut(s) 1590
HaeIII GGCC 3 cut(s) 1419, 1541, 1559
HapII CCGG 5 cut(s) 167, 323, 403, 549, 1560
HgaI GACGC 2 cut(s) 755, 1150
Hin1II CATG 8 cut(s) 257, 282, 419, 691, 853, 1418, 1614, 1690
HincII GTYRAC 1 cut(s) 593
HindII GTYRAC 1 cut(s) 593
HindIII AAGCTT 2 cut(s) 1171, 1203
HinfI GANTC 4 cut(s) 107, 258, 274, 1551
HpaII CCGG 5 cut(s) 167, 323, 403, 549, 1560
HphI GGTGA 3 cut(s) 509, 1102, 1595
Hpy166II GTNNAC 4 cut(s) 593, 646, 822, 1093
Hpy188I TCNGA 7 cut(s) 286, 571, 625, 671, 1296, 1351, 1550
Hpy188III TCNNGA 4 cut(s) 100, 145, 293, 1595
Hpy8I GTNNAC 4 cut(s) 593, 646, 822, 1093
Hpy99I CGWCG 1 cut(s) 412
HpyAV CCTTC 5 cut(s) 74, 359, 980, 1121, 1324
HpyCH4IV ACGT 2 cut(s) 1600, 1664
HpyCH4V TGCA 4 cut(s) 129, 191, 995, 1621
HpyF10VI GCNNNNNNNGC 6 cut(s) 35, 746, 749, 758, 860, 1023
HpyF3I CTNAG 4 cut(s) 12, 709, 1281, 1505
HpySE526I ACGT 2 cut(s) 1600, 1664
Hsp92II CATG 8 cut(s) 257, 282, 419, 691, 853, 1418, 1614, 1690
Kzo9I GATC 5 cut(s) 345, 1180, 1346, 1396, 1495
LmnI GCTCC 3 cut(s) 419, 672, 958
Lsp1109I GCAGC 8 cut(s) 141, 670, 752, 761, 841, 1007, 1138, 1656
LweI GCATC 3 cut(s) 86, 562, 799
MabI ACCWGGT 1 cut(s) 835
MaeI CTAG 5 cut(s) 53, 450, 858, 878, 1028
MaeII ACGT 2 cut(s) 1600, 1664
MaeIII GTNAC 3 cut(s) 872, 1516, 1601
MalI GATC 5 cut(s) 347, 1182, 1348, 1398, 1497
MboI GATC 5 cut(s) 345, 1180, 1346, 1396, 1495
MboII GAAGA 5 cut(s) 52, 355, 697, 1403, 1621
MflI RGATCY 1 cut(s) 1180
MhlI GDGCHC 1 cut(s) 1527
MlsI TGGCCA 1 cut(s) 1419
MluCI AATT 7 cut(s) 91, 161, 423, 536, 1359, 1378, 1453
MluNI TGGCCA 1 cut(s) 1419
MlyI GAGTC 1 cut(s) 267
MmeI TCCRAC 1 cut(s) 1417
Mox20I TGGCCA 1 cut(s) 1419
MroXI GAANNNNTTC 1 cut(s) 1075
MscI TGGCCA 1 cut(s) 1419
MseI TTAA 4 cut(s) 153, 1020, 1035, 1529
MslI CAYNNNNRTG 4 cut(s) 252, 1325, 1413, 1656
Msp20I TGGCCA 1 cut(s) 1419
MspA1I CMGCKG 2 cut(s) 1280, 1544
MspCI CTTAAG 1 cut(s) 1528
MspI CCGG 5 cut(s) 167, 323, 403, 549, 1560
MspR9I CCNGG 9 cut(s) 168, 324, 403, 404, 444, 597, 795, 837, 1569
Mva1269I GAATGC 2 cut(s) 997, 1623
MvaI CCWGG 5 cut(s) 444, 597, 795, 837, 1569
MvnI CGCG 1 cut(s) 1144
MwoI GCNNNNNNNGC 6 cut(s) 35, 746, 749, 758, 860, 1023
NciI CCSGG 4 cut(s) 168, 324, 403, 404
NcoI CCATGG 1 cut(s) 278
NdeII GATC 5 cut(s) 345, 1180, 1346, 1396, 1495
NlaIII CATG 8 cut(s) 257, 282, 419, 691, 853, 1418, 1614, 1690
NlaIV GGNNCC 5 cut(s) 171, 370, 401, 1182, 1473
NmuCI GTSAC 1 cut(s) 1601
NspI RCATGY 1 cut(s) 1690
OliI CACNNNNGTG 1 cut(s) 1325
PctI GAATGC 2 cut(s) 997, 1623
PdmI GAANNNNTTC 1 cut(s) 1075
PfeI GAWTC 3 cut(s) 107, 274, 1551
PfoI TCCNGGA 3 cut(s) 166, 793, 1567
PleI GAGTC 1 cut(s) 266
PpsI GAGTC 1 cut(s) 266
PpuMI RGGWCCY 1 cut(s) 1471
PshAI GACNNNNGTC 1 cut(s) 734
PsiI TTATAA 2 cut(s) 90, 1233
Psp1406I AACGTT 1 cut(s) 1664
Psp5II RGGWCCY 1 cut(s) 1471
Psp6I CCWGG 5 cut(s) 442, 595, 793, 835, 1567
PspEI GGTNACC 1 cut(s) 872
PspFI CCCAGC 1 cut(s) 1388
PspGI CCWGG 5 cut(s) 442, 595, 793, 835, 1567
PspN4I GGNNCC 5 cut(s) 171, 370, 401, 1182, 1473
PspPI GGNCC 7 cut(s) 170, 290, 399, 646, 1130, 1471, 1539
PspPPI RGGWCCY 1 cut(s) 1471
PstNI CAGNNNCTG 1 cut(s) 1520
PsuI RGATCY 1 cut(s) 1180
PvuII CAGCTG 1 cut(s) 1280
RsaI GTAC 2 cut(s) 57, 528
RsaNI GTAC 2 cut(s) 56, 527
RseI CAYNNNNRTG 4 cut(s) 252, 1325, 1413, 1656
SaqAI TTAA 4 cut(s) 153, 1020, 1035, 1529
Sau3AI GATC 5 cut(s) 345, 1180, 1346, 1396, 1495
Sau96I GGNCC 7 cut(s) 170, 290, 399, 646, 1130, 1471, 1539
ScaI AGTACT 1 cut(s) 57
SchI GAGTC 1 cut(s) 267
ScrFI CCNGG 9 cut(s) 168, 324, 403, 404, 444, 597, 795, 837, 1569
SduI GDGCHC 1 cut(s) 1527
SexAI ACCWGGT 1 cut(s) 835
SfaNI GCATC 3 cut(s) 86, 562, 799
SinI GGWCC 6 cut(s) 170, 290, 399, 646, 1130, 1471
SmaI CCCGGG 1 cut(s) 404
SmiMI CAYNNNNRTG 4 cut(s) 252, 1325, 1413, 1656
SmlI CTYRAG 1 cut(s) 1528
SmoI CTYRAG 1 cut(s) 1528
SpeI ACTAGT 1 cut(s) 52
Sse9I AATT 7 cut(s) 91, 161, 423, 536, 1359, 1378, 1453
SsiI CCGC 3 cut(s) 759, 1542, 1691
SspI AATATT 1 cut(s) 492
SspMI CTAG 5 cut(s) 53, 450, 858, 878, 1028
StyD4I CCNGG 9 cut(s) 166, 322, 401, 402, 442, 595, 793, 835, 1567
StyI CCWWGG 3 cut(s) 278, 868, 1108
TaiI ACGT 2 cut(s) 1603, 1667
TaqI TCGA 1 cut(s) 1069
TasI AATT 7 cut(s) 91, 161, 423, 536, 1359, 1378, 1453
TatI WGTACW 1 cut(s) 55
TauI GCSGC 2 cut(s) 1544, 1693
TfiI GAWTC 3 cut(s) 107, 274, 1551
Tru1I TTAA 4 cut(s) 153, 1020, 1035, 1529
Tru9I TTAA 4 cut(s) 153, 1020, 1035, 1529
TscAI CASTG 3 cut(s) 254, 738, 1592
TseFI GTSAC 1 cut(s) 1601
TseI GCWGC 8 cut(s) 129, 683, 740, 749, 854, 995, 1151, 1669
Tsp45I GTSAC 1 cut(s) 1601
TspDTI ATGAA 9 cut(s) 56, 206, 404, 549, 704, 1175, 1403, 1621, 1674
TspMI CCCGGG 1 cut(s) 402
TspRI CASTG 3 cut(s) 254, 738, 1592
Vha464I CTTAAG 1 cut(s) 1528
VpaK11BI GGWCC 6 cut(s) 170, 290, 399, 646, 1130, 1471
XapI RAATTY 4 cut(s) 161, 536, 1378, 1453
XceI RCATGY 1 cut(s) 1690
XmaI CCCGGG 1 cut(s) 402
XmnI GAANNNNTTC 1 cut(s) 1075
XspI CTAG 5 cut(s) 53, 450, 858, 878, 1028
ZrmI AGTACT 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.