Rh3DG211700

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000359
Physical Location & Seq
Reverse (-)
19570120 .. 19572456
2337 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG211700.1

Sequence Viewer

Length: 1698 bp
ATGTGGTCTGCTAAGAAGTGGAAATCAGCACTTCAGGCTTTATCATTTCTACTAGTACTCTTCCTTCATCGCCAAGCTTCAGCCGATTATAATTGGGTCGTGAAAGAATCCACATATACAAGGCTGTGCAGCACCAAGTCAATATTGACAGTTAATGGAAAATTTCCGGGACCAGTTTTACGAGCTTATGCAGGAGATATTGTCTATGTCAATGTTCATAACAGAGGCAGATACAACATCACTATTCACTGGCATGGAGTCAAGCAACCGAGGAATCCATGGTCTGATGGTCCTGAATACATCACACAATGTGGTATTCAACCGGGTGGGAGTTTCAGGCAGAAGATCATATTTTCTGTTGAGGAAGGAACCCTTTGGTGGCACGCTCATAGTGATTGGTCCCGGGCGACGGTTCATGGAGCAATTATTGTCTATCCAAAACCAGGAACTAGCTACCCTTTTCCCAAGCCCTATGCTGAAGTTCCCATAATATTAGGTGAGTGGTGGAAAAGTGATGTAATGGAGGTACTTGATGAATTTGTTAGAACCGGAGGAACTCCCAATGTTTCTGATGCTTACACCATCAATGGTCAACCAGGAGACCTCTATCCTTGCTCAAAATCAGAAACATTCAAACTCTCTGTGGACCAAAACAAGACCCATCTGCTCCGAATAGTCAACGCTGCCATGAACAGCATCCTTTTCTTCTCAGTCGCAAACCATAACCTGACGGTGGTCGCAGCAGACGCAGCCTACACCGCGCCAATCTCAACACCCTACATCACAATATCTCCTGGACAAACCATTGATGCCCTGTTGTTCACAGACCAACAACCTGGTCGTTATTACATGGCTGCTAGGGCTTACCAAGGTAACCTAGCGATTGGTTTTGACAACACCACAACCACATCAATAGTTGAATACAAAGATGGCAATGGAAATGGTAAAACTGCTCCATTTCCCTACCTTCCTTACTATAACAACACGAATGCAGCCTTTGGCTTTTTCAATAGACTTAAAAGCCTAGCCATTAACCAAACCGATGTCGTAAAAACCACCACCACTCGAATGGTTTCAACAGTATCGGTGAACACATTCCCTTGCCTTGGAAATCAAACCTGTGAAGGACCCAATGGGACGCGATTAGCTGCCAGTATGAACAACATAAGCTTTGTGGATCCGAGAGTAGATATATTACAAGCTTACTATTACTATATCAACGGGGTTTATAAAGAGGGTTTCCCAGATTTTCCACCGTTGATTTTTAACTTCACAGCTGAGGACTTCCCTCTGATATTGGAAATACCAGAGAGGGACACAAAGGTGAAGGTTTTGGAATATGGATCGGATGTGGAAATTGTTTTTCAAAACACAAATTTAGTGGCTGGGATAGATCATCCCATGCATCTTCATGGCCATAGCTTCCACATTGTTGGAACTGGCTTTGGGAATTTTGATGTAAAAAAGGACCCATTGAGCTTCAATCTTGTTGATCCTCCTCTTAGGAACACAGTTACTGTGCCCTTAAGTGGATGGGCCGCTGTCAGATTCAAGGCCAGAAATCCTGGAGTGTGGTATTTACACTGTCATCTTGAACGTCACCTAACATGGGGAATGGACACCGTCTTCATCGTAAAGAATGGAAAACACCCAAATGAAACGTTGCCGCCCCCTCCACCAGACATGCCGCCGTGTTGA

Protein Analysis

565

Amino Acids

63.22

Weight (kDa)

7.67

Isoelectric Point (pI)

25.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 34 - 147 2.1e-37 Multicopper oxidase
Cu-oxidase PF00394 160 - 309 1.1e-39 Multicopper oxidase
Cu-oxidase_2 PF07731 435 - 548 5.4e-39 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000359)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48100
fragaria_vesca FvH4_1g24380 FvH4_2g05800 FvH4_5g30730
malus_domestica MD01G1234900.v1.1 MD01G1235100.v1.1 MD01G1235200.v1.1 MD07G1307400.v1.1 MD07G1308000.v1.1 MD10G1042300.v1.1 MD10G1042400.v1.1 MD10G1042500.v1.1 MD10G1042700.v1.1
prunus_persica Prupe.2G325200_v2.0.a1 Prupe.6G242000_v2.0.a1 Prupe.8G046800_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1
pyrus_communis pycom01g24320 pycom01g24330 pycom07g28020 pycom10g02950 pycom17g03690
rosa_chinensis RchiOBHm_Chr1g0384031 RchiOBHm_Chr2g0120941 RchiOBHm_Chr2g0120971 RchiOBHm_Chr2g0121051 RchiOBHm_Chr2g0121181 RchiOBHm_Chr2g0121211 RchiOBHm_Chr3g0473931 RchiOBHm_Chr3g0473941 RchiOBHm_Chr6g0257941 RchiOBHm_Chr6g0284781
rosa_laevigata RLG00000008541 RLG00000014737 RLG00000018604 RLG00000018607 RLG00000018608 RLG00000018610 RLG00000018611 RLG00000018613 RLG00000023967 RLG00000023970 RLG00000026078 RLG00000035183
rosa_multiflora Rmu_sc0000079.1_g000043 Rmu_sc0000079.1_g000062 Rmu_sc0000079.1_g000069 Rmu_sc0000621.1_g000019 Rmu_sc0000621.1_g000025 Rmu_sc0000621.1_g000041 Rmu_sc0000652.1_g000018 Rmu_sc0002414.1_g000030 Rmu_sc0002414.1_g000033 Rmu_sc0002843.1_g000016 Rmu_sc0005137.1_g000035 Rmu_sc0005139.1_g000021
rosa_roxburghii Rroxscaffold_2G00122530 Rroxscaffold_2G00122570 Rroxscaffold_2G00122580 Rroxscaffold_2G00122650 Rroxscaffold_4G00277080 Rroxscaffold_6G00407610 Rroxscaffold_6G00407620 Rroxscaffold_7G00209050
rosa_rugosa Rorug01G0444300 Rorug02G0232700 Rorug02G0232700 Rorug02G0232900 Rorug03G0137100 Rorug05G0565600 Rorug05G0566500
rosa_samantha Rh1BG427300 Rh1CG440100 Rh2CG278100 Rh2CG278200 Rh2CG278700 Rh2CG278800 Rh2CG279100 Rh2DG314200 Rh2DG314300 Rh2DG314600 Rh3AG187200 Rh3DG211700 Rh3DG211800 Rh5AG356600 Rh6BG078000 Rh6BG078700 Rh6CG073300 Rh6DG070300 Rh6DG190200 Rh6DG274700 Rh7BG365900
rosa_wichuraiana Rw0G018400 Rw1G040270 Rw2G023160 Rw2G023170 Rw2G023190 Rw2G023200 Rw2G023220 Rw2G023230 Rw3G017140 Rw3G017150 Rw4G012840 Rw6G007580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 90, 1230
AccII CGCG 2 cut(s) 761, 1141
AciI CCGC 4 cut(s) 759, 1539, 1667, 1688
AclI AACGTT 1 cut(s) 1661
AclWI GGATC 4 cut(s) 1172, 1185, 1351, 1487
AcoI YGGCCR 1 cut(s) 1414
AcsI RAATTY 4 cut(s) 161, 536, 1375, 1450
AcuI CTGAAG 3 cut(s) 17, 63, 498
AdeI CACNNNGTG 1 cut(s) 311
AfaI GTAC 2 cut(s) 57, 528
AfiI CCNNNNNNNGG 7 cut(s) 378, 409, 443, 733, 1106, 1529, 1609
AflII CTTAAG 1 cut(s) 1525
AgsI TTSAA 9 cut(s) 320, 634, 920, 1009, 1077, 1367, 1483, 1552, 1595
AhlI ACTAGT 1 cut(s) 52
AjnI CCWGG 5 cut(s) 442, 595, 793, 835, 1564
AleI CACNNNNGTG 1 cut(s) 1322
AluBI AGCT 9 cut(s) 77, 185, 453, 1148, 1170, 1202, 1277, 1422, 1479
AluI AGCT 9 cut(s) 77, 185, 453, 1148, 1170, 1202, 1277, 1422, 1479
Alw26I GTCTC 1 cut(s) 594
AlwI GGATC 4 cut(s) 1172, 1185, 1351, 1487
AlwNI CAGNNNCTG 1 cut(s) 1517
Ama87I CYCGRG 1 cut(s) 402
AoxI GGCC 3 cut(s) 1414, 1536, 1554
ApeKI GCWGC 7 cut(s) 129, 683, 740, 749, 854, 992, 1148
ApoI RAATTY 4 cut(s) 161, 536, 1375, 1450
Asp700I GAANNNNTTC 2 cut(s) 1072, 1094
AspLEI GCGC 1 cut(s) 763
AspS9I GGNCC 7 cut(s) 170, 290, 399, 646, 1127, 1468, 1536
AsuC2I CCSGG 4 cut(s) 168, 324, 403, 404
AsuHPI GGTGA 4 cut(s) 509, 1099, 1336, 1592
AvaI CYCGRG 1 cut(s) 402
AvaII GGWCC 6 cut(s) 170, 290, 399, 646, 1127, 1468
BaeGI GKGCMC 1 cut(s) 1524
BalI TGGCCA 1 cut(s) 1416
BamHI GGATCC 1 cut(s) 1177
BarI GAAGNNNNNNTAC 2 cut(s) 48, 80
BbsI GAAGAC 1 cut(s) 1618
BbvCI CCTCAGC 1 cut(s) 1278
BbvI GCAGC 7 cut(s) 141, 670, 752, 761, 841, 1004, 1135
BccI CCATC 5 cut(s) 281, 590, 669, 923, 1527
BceAI ACGGC 1 cut(s) 1675
BciT130I CCWGG 5 cut(s) 444, 597, 795, 837, 1566
BcnI CCSGG 4 cut(s) 168, 324, 403, 404
BcoDI GTCTC 1 cut(s) 594
BcuI ACTAGT 1 cut(s) 52
BfaI CTAG 5 cut(s) 53, 450, 858, 878, 1025
BfrI CTTAAG 1 cut(s) 1525
BmcAI AGTACT 1 cut(s) 57
Bme1390I CCNGG 9 cut(s) 168, 324, 403, 404, 444, 597, 795, 837, 1566
Bme18I GGWCC 6 cut(s) 170, 290, 399, 646, 1127, 1468
BmeT110I CYCGRG 1 cut(s) 402
BmgT120I GGNCC 7 cut(s) 170, 290, 399, 646, 1127, 1468, 1536
BmiI GGNNCC 6 cut(s) 171, 370, 401, 1129, 1179, 1470
BmrFI CCNGG 9 cut(s) 168, 324, 403, 404, 444, 597, 795, 837, 1566
BmsI GCATC 4 cut(s) 562, 705, 799, 1414
BoxI GACNNNNGTC 1 cut(s) 734
BpiI GAAGAC 1 cut(s) 1618
BpmI CTGGAG 1 cut(s) 1587
Bpu10I CCTNAGC 1 cut(s) 1278
BpuMI CCSGG 4 cut(s) 168, 324, 403, 404
BsaI GGTCTC 1 cut(s) 594
BsaJI CCNNGG 5 cut(s) 269, 278, 402, 868, 1105
BsaWI WCCGGW 1 cut(s) 548
BsaXI ACNNNNNCTCC 4 cut(s) 186, 216, 775, 805
Bsc4I CCNNNNNNNGG 7 cut(s) 378, 409, 443, 733, 1106, 1529, 1609
Bse1I ACTGG 4 cut(s) 173, 254, 1152, 1444
Bse3DI GCAATG 1 cut(s) 940
BseBI CCWGG 5 cut(s) 444, 597, 795, 837, 1566
BseDI CCNNGG 5 cut(s) 269, 278, 402, 868, 1105
BseGI GGATG 4 cut(s) 696, 1354, 1396, 1538
BseLI CCNNNNNNNGG 7 cut(s) 378, 409, 443, 733, 1106, 1529, 1609
BseMI GCAATG 1 cut(s) 940
BseMII CTCAG 2 cut(s) 723, 1269
BseNI ACTGG 4 cut(s) 173, 254, 1152, 1444
BseRI GAGGAG 1 cut(s) 1488
BseSI GKGCMC 1 cut(s) 1524
BseXI GCAGC 7 cut(s) 141, 670, 752, 761, 841, 1004, 1135
BseYI CCCAGC 1 cut(s) 1385
BsgI GTGCAG 1 cut(s) 148
Bsh1236I CGCG 2 cut(s) 761, 1141
BshFI GGCC 3 cut(s) 1416, 1538, 1556
BsiHKCI CYCGRG 1 cut(s) 402
BsiSI CCGG 4 cut(s) 167, 323, 403, 549
BslFI GGGAC 4 cut(s) 183, 385, 1150, 1328
BslI CCNNNNNNNGG 7 cut(s) 378, 409, 443, 733, 1106, 1529, 1609
BsmAI GTCTC 1 cut(s) 594
BsmFI GGGAC 4 cut(s) 183, 385, 1150, 1328
BsmI GAATGC 1 cut(s) 994
BsnI GGCC 3 cut(s) 1416, 1538, 1556
Bso31I GGTCTC 1 cut(s) 594
BsoBI CYCGRG 1 cut(s) 402
Bsp1286I GDGCHC 1 cut(s) 1524
Bsp143I GATC 5 cut(s) 345, 1177, 1343, 1393, 1492
Bsp19I CCATGG 1 cut(s) 278
BspACI CCGC 4 cut(s) 759, 1539, 1667, 1688
BspANI GGCC 3 cut(s) 1416, 1538, 1556
BspCNI CTCAG 2 cut(s) 722, 1270
BspFNI CGCG 2 cut(s) 761, 1141
BspLI GGNNCC 6 cut(s) 171, 370, 401, 1129, 1179, 1470
BspPI GGATC 4 cut(s) 1172, 1185, 1351, 1487
BspTI CTTAAG 1 cut(s) 1525
BspTNI GGTCTC 1 cut(s) 594
BsrDI GCAATG 1 cut(s) 940
BsrI ACTGG 4 cut(s) 173, 254, 1152, 1444
BssECI CCNNGG 5 cut(s) 269, 278, 402, 868, 1105
BssMI GATC 5 cut(s) 345, 1177, 1343, 1393, 1492
BssT1I CCWWGG 3 cut(s) 278, 868, 1105
Bst2UI CCWGG 5 cut(s) 444, 597, 795, 837, 1566
Bst4CI ACNGT 9 cut(s) 151, 412, 733, 1081, 1257, 1513, 1519, 1586, 1624
Bst6I CTCTTC 1 cut(s) 65
BstAFI CTTAAG 1 cut(s) 1525
BstC8I GCNNGC 1 cut(s) 384
BstDEI CTNAG 4 cut(s) 12, 709, 1278, 1502
BstDSI CCRYGG 1 cut(s) 278
BstEII GGTNACC 1 cut(s) 872
BstF5I GGATG 4 cut(s) 696, 1354, 1396, 1538
BstFNI CGCG 2 cut(s) 761, 1141
BstHHI GCGC 1 cut(s) 763
BstKTI GATC 5 cut(s) 348, 1180, 1346, 1396, 1495
BstMAI GTCTC 1 cut(s) 594
BstMBI GATC 5 cut(s) 345, 1177, 1343, 1393, 1492
BstMWI GCNNNNNNNGC 5 cut(s) 35, 746, 749, 758, 860
BstNI CCWGG 5 cut(s) 444, 597, 795, 837, 1566
BstNSI RCATGY 1 cut(s) 1687
BstPAI GACNNNNGTC 1 cut(s) 734
BstPI GGTNACC 1 cut(s) 872
BstSCI CCNGG 9 cut(s) 166, 322, 401, 402, 442, 595, 793, 835, 1564
BstSLI GKGCMC 1 cut(s) 1524
BstUI CGCG 2 cut(s) 761, 1141
BstV1I GCAGC 7 cut(s) 141, 670, 752, 761, 841, 1004, 1135
BstV2I GAAGAC 1 cut(s) 1618
BstX2I RGATCY 1 cut(s) 1177
BstXI CCANNNNNNTGG 3 cut(s) 836, 1069, 1433
BstYI RGATCY 1 cut(s) 1177
BsuRI GGCC 3 cut(s) 1416, 1538, 1556
BtgI CCRYGG 1 cut(s) 278
BtgZI GCGATG 1 cut(s) 53
BtsCI GGATG 4 cut(s) 696, 1354, 1396, 1538
BtsIMutI CAGTG 2 cut(s) 247, 1582
Cac8I GCNNGC 1 cut(s) 384
CaiI CAGNNNCTG 1 cut(s) 1517
CfoI GCGC 1 cut(s) 763
Cfr13I GGNCC 7 cut(s) 170, 290, 399, 646, 1127, 1468, 1536
Cfr9I CCCGGG 1 cut(s) 402
CseI GACGC 2 cut(s) 755, 1147
CsiI ACCWGGT 1 cut(s) 835
Csp6I GTAC 2 cut(s) 56, 527
CspCI CAANNNNNGTGG 2 cut(s) 1362, 1397
CviAII CATG 9 cut(s) 254, 279, 416, 688, 850, 1402, 1412, 1608, 1684
CviQI GTAC 2 cut(s) 56, 527
DdeI CTNAG 4 cut(s) 12, 709, 1278, 1502
DpnI GATC 5 cut(s) 347, 1179, 1345, 1395, 1494
DpnII GATC 5 cut(s) 345, 1177, 1343, 1393, 1492
DraIII CACNNNGTG 1 cut(s) 311
EaeI YGGCCR 1 cut(s) 1414
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
Eco130I CCWWGG 3 cut(s) 278, 868, 1105
Eco31I GGTCTC 1 cut(s) 594
Eco47I GGWCC 6 cut(s) 170, 290, 399, 646, 1127, 1468
Eco57I CTGAAG 3 cut(s) 17, 63, 498
Eco88I CYCGRG 1 cut(s) 402
Eco91I GGTNACC 1 cut(s) 872
EcoO109I RGGNCCY 2 cut(s) 1127, 1468
EcoO65I GGTNACC 1 cut(s) 872
EcoRII CCWGG 5 cut(s) 442, 595, 793, 835, 1564
EcoT14I CCWWGG 3 cut(s) 278, 868, 1105
EcoT22I ATGCAT 1 cut(s) 1407
ErhI CCWWGG 3 cut(s) 278, 868, 1105
FaeI CATG 9 cut(s) 257, 282, 419, 691, 853, 1405, 1415, 1611, 1687
FalI AAGNNNNNCTT 2 cut(s) 357, 389
FaqI GGGAC 4 cut(s) 183, 385, 1150, 1328
FatI CATG 9 cut(s) 253, 278, 415, 687, 849, 1401, 1411, 1607, 1683
FokI GGATG 4 cut(s) 683, 1361, 1383, 1545
FspBI CTAG 5 cut(s) 53, 450, 858, 878, 1025
GlaI GCGC 1 cut(s) 762
GsaI CCCAGC 1 cut(s) 1389
GsuI CTGGAG 1 cut(s) 1587
HaeIII GGCC 3 cut(s) 1416, 1538, 1556
HapII CCGG 4 cut(s) 167, 323, 403, 549
HgaI GACGC 2 cut(s) 755, 1147
HhaI GCGC 1 cut(s) 763
Hin1II CATG 9 cut(s) 257, 282, 419, 691, 853, 1405, 1415, 1611, 1687
Hin6I GCGC 1 cut(s) 761
HinP1I GCGC 1 cut(s) 761
HincII GTYRAC 2 cut(s) 593, 679
HindII GTYRAC 2 cut(s) 593, 679
HindIII AAGCTT 3 cut(s) 75, 1168, 1200
HinfI GANTC 4 cut(s) 107, 258, 274, 1548
HpaII CCGG 4 cut(s) 167, 323, 403, 549
HphI GGTGA 4 cut(s) 509, 1099, 1336, 1592
Hpy166II GTNNAC 5 cut(s) 593, 646, 679, 822, 1090
Hpy188I TCNGA 8 cut(s) 286, 571, 625, 671, 1182, 1293, 1348, 1547
Hpy188III TCNNGA 3 cut(s) 100, 293, 1592
Hpy8I GTNNAC 5 cut(s) 593, 646, 679, 822, 1090
Hpy99I CGWCG 1 cut(s) 412
HpyAV CCTTC 5 cut(s) 74, 359, 977, 1118, 1321
HpyCH4III ACNGT 9 cut(s) 151, 412, 733, 1081, 1257, 1513, 1519, 1586, 1624
HpyCH4IV ACGT 2 cut(s) 1597, 1661
HpyCH4V TGCA 4 cut(s) 129, 191, 992, 1405
HpyF10VI GCNNNNNNNGC 5 cut(s) 35, 746, 749, 758, 860
HpyF3I CTNAG 4 cut(s) 12, 709, 1278, 1502
HpySE526I ACGT 2 cut(s) 1597, 1661
Hsp92II CATG 9 cut(s) 257, 282, 419, 691, 853, 1405, 1415, 1611, 1687
HspAI GCGC 1 cut(s) 761
Kzo9I GATC 5 cut(s) 345, 1177, 1343, 1393, 1492
LmnI GCTCC 3 cut(s) 419, 672, 958
Lsp1109I GCAGC 7 cut(s) 141, 670, 752, 761, 841, 1004, 1135
LweI GCATC 4 cut(s) 562, 705, 799, 1414
MabI ACCWGGT 1 cut(s) 835
MaeI CTAG 5 cut(s) 53, 450, 858, 878, 1025
MaeII ACGT 2 cut(s) 1597, 1661
MaeIII GTNAC 3 cut(s) 872, 1513, 1598
MalI GATC 5 cut(s) 347, 1179, 1345, 1395, 1494
MboI GATC 5 cut(s) 345, 1177, 1343, 1393, 1492
MboII GAAGA 5 cut(s) 52, 355, 697, 1400, 1618
MflI RGATCY 1 cut(s) 1177
MhlI GDGCHC 1 cut(s) 1524
MlsI TGGCCA 1 cut(s) 1416
MluCI AATT 7 cut(s) 91, 161, 423, 536, 1356, 1375, 1450
MluNI TGGCCA 1 cut(s) 1416
MlyI GAGTC 1 cut(s) 267
MmeI TCCRAC 1 cut(s) 1414
Mox20I TGGCCA 1 cut(s) 1416
Mph1103I ATGCAT 1 cut(s) 1407
MroXI GAANNNNTTC 2 cut(s) 1072, 1094
MscI TGGCCA 1 cut(s) 1416
MseI TTAA 5 cut(s) 153, 1017, 1032, 1266, 1526
MslI CAYNNNNRTG 5 cut(s) 252, 1067, 1322, 1410, 1653
Msp20I TGGCCA 1 cut(s) 1416
MspA1I CMGCKG 2 cut(s) 1277, 1541
MspCI CTTAAG 1 cut(s) 1525
MspI CCGG 4 cut(s) 167, 323, 403, 549
MspR9I CCNGG 9 cut(s) 168, 324, 403, 404, 444, 597, 795, 837, 1566
Mva1269I GAATGC 1 cut(s) 994
MvaI CCWGG 5 cut(s) 444, 597, 795, 837, 1566
MvnI CGCG 2 cut(s) 761, 1141
MwoI GCNNNNNNNGC 5 cut(s) 35, 746, 749, 758, 860
NciI CCSGG 4 cut(s) 168, 324, 403, 404
NcoI CCATGG 1 cut(s) 278
NdeII GATC 5 cut(s) 345, 1177, 1343, 1393, 1492
NlaIII CATG 9 cut(s) 257, 282, 419, 691, 853, 1405, 1415, 1611, 1687
NlaIV GGNNCC 6 cut(s) 171, 370, 401, 1129, 1179, 1470
NmuCI GTSAC 1 cut(s) 1598
NsiI ATGCAT 1 cut(s) 1407
NspI RCATGY 1 cut(s) 1687
OliI CACNNNNGTG 1 cut(s) 1322
PctI GAATGC 1 cut(s) 994
PdmI GAANNNNTTC 2 cut(s) 1072, 1094
PfeI GAWTC 3 cut(s) 107, 274, 1548
PflFI GACNNNGTC 1 cut(s) 1622
PfoI TCCNGGA 3 cut(s) 166, 793, 1564
PleI GAGTC 1 cut(s) 266
PpsI GAGTC 1 cut(s) 266
PpuMI RGGWCCY 2 cut(s) 1127, 1468
PshAI GACNNNNGTC 1 cut(s) 734
PsiI TTATAA 2 cut(s) 90, 1230
Psp1406I AACGTT 1 cut(s) 1661
Psp5II RGGWCCY 2 cut(s) 1127, 1468
Psp6I CCWGG 5 cut(s) 442, 595, 793, 835, 1564
PspEI GGTNACC 1 cut(s) 872
PspFI CCCAGC 1 cut(s) 1385
PspGI CCWGG 5 cut(s) 442, 595, 793, 835, 1564
PspN4I GGNNCC 6 cut(s) 171, 370, 401, 1129, 1179, 1470
PspPI GGNCC 7 cut(s) 170, 290, 399, 646, 1127, 1468, 1536
PspPPI RGGWCCY 2 cut(s) 1127, 1468
PstNI CAGNNNCTG 1 cut(s) 1517
PsuI RGATCY 1 cut(s) 1177
PsyI GACNNNGTC 1 cut(s) 1622
PvuII CAGCTG 1 cut(s) 1277
RsaI GTAC 2 cut(s) 57, 528
RsaNI GTAC 2 cut(s) 56, 527
RseI CAYNNNNRTG 5 cut(s) 252, 1067, 1322, 1410, 1653
SaqAI TTAA 5 cut(s) 153, 1017, 1032, 1266, 1526
Sau3AI GATC 5 cut(s) 345, 1177, 1343, 1393, 1492
Sau96I GGNCC 7 cut(s) 170, 290, 399, 646, 1127, 1468, 1536
ScaI AGTACT 1 cut(s) 57
SchI GAGTC 1 cut(s) 267
ScrFI CCNGG 9 cut(s) 168, 324, 403, 404, 444, 597, 795, 837, 1566
SduI GDGCHC 1 cut(s) 1524
SexAI ACCWGGT 1 cut(s) 835
SfaNI GCATC 4 cut(s) 562, 705, 799, 1414
SinI GGWCC 6 cut(s) 170, 290, 399, 646, 1127, 1468
SmaI CCCGGG 1 cut(s) 404
SmiMI CAYNNNNRTG 5 cut(s) 252, 1067, 1322, 1410, 1653
SmlI CTYRAG 1 cut(s) 1525
SmoI CTYRAG 1 cut(s) 1525
SpeI ACTAGT 1 cut(s) 52
Sse9I AATT 7 cut(s) 91, 161, 423, 536, 1356, 1375, 1450
SsiI CCGC 4 cut(s) 759, 1539, 1667, 1688
SspI AATATT 2 cut(s) 144, 492
SspMI CTAG 5 cut(s) 53, 450, 858, 878, 1025
StyD4I CCNGG 9 cut(s) 166, 322, 401, 402, 442, 595, 793, 835, 1564
StyI CCWWGG 3 cut(s) 278, 868, 1105
TaaI ACNGT 9 cut(s) 151, 412, 733, 1081, 1257, 1513, 1519, 1586, 1624
TaiI ACGT 2 cut(s) 1600, 1664
TaqI TCGA 1 cut(s) 1066
TasI AATT 7 cut(s) 91, 161, 423, 536, 1356, 1375, 1450
TatI WGTACW 1 cut(s) 55
TauI GCSGC 3 cut(s) 1541, 1669, 1690
TfiI GAWTC 3 cut(s) 107, 274, 1548
Tru1I TTAA 5 cut(s) 153, 1017, 1032, 1266, 1526
Tru9I TTAA 5 cut(s) 153, 1017, 1032, 1266, 1526
TscAI CASTG 2 cut(s) 254, 1589
TseFI GTSAC 1 cut(s) 1598
TseI GCWGC 7 cut(s) 129, 683, 740, 749, 854, 992, 1148
Tsp45I GTSAC 1 cut(s) 1598
TspDTI ATGAA 9 cut(s) 56, 206, 404, 549, 704, 1172, 1400, 1618, 1671
TspMI CCCGGG 1 cut(s) 402
TspRI CASTG 2 cut(s) 254, 1589
Tth111I GACNNNGTC 1 cut(s) 1622
Vha464I CTTAAG 1 cut(s) 1525
VpaK11BI GGWCC 6 cut(s) 170, 290, 399, 646, 1127, 1468
XapI RAATTY 4 cut(s) 161, 536, 1375, 1450
XceI RCATGY 1 cut(s) 1687
XcmI CCANNNNNNNNNTGG 1 cut(s) 1066
XmaI CCCGGG 1 cut(s) 402
XmnI GAANNNNTTC 2 cut(s) 1072, 1094
XspI CTAG 5 cut(s) 53, 450, 858, 878, 1025
ZrmI AGTACT 1 cut(s) 57
Zsp2I ATGCAT 1 cut(s) 1407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.