Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000359

Physical Location & Seq

Genomic Coordinates Forward (+)

55853228 .. 55853654

Gene Structure 427 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00122570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGAAGGTTTCCAGAATTAGCCTGCATCTGCAACTTTTGGGGTTGTTATTGGCTTTGAATGGCTTCCTCCTCCATTGCCAAGCTTGGCCAGCTCGTTACACTTTTGTGGTGGAAAACACTCCATACAAGAGACTCTGCAGCACAAAGAACATCTTGACTGTAAATGGCCAGTTTCCAGGACCGACTTTGTATGCTCACAAAGGAGACACCATCATCGTCGATGTCATTAACAAAGGCAATCGTAACATTACTCTCCACTGGTGCGTTCTTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0010023 GO:0010035 GO:0010038 GO:0016491 GO:0016722 GO:0017144 GO:0018130 GO:0018958 GO:0019438 GO:0019748 GO:0042221 GO:0043167 GO:0043169 GO:0044237 GO:0044249 GO:0044550 GO:0046189 GO:0046483 GO:0046688 GO:0046872 GO:0046914 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

91

Amino Acids

10.27

Weight (kDa)

9.66

Isoelectric Point (pI)

28.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase_3	PF07732	37 - 87	3.4e-13	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48100
fragaria_vesca	FvH4_1g24380 FvH4_2g05800 FvH4_5g30730
malus_domestica	MD01G1234900.v1.1 MD01G1235100.v1.1 MD01G1235200.v1.1 MD07G1307400.v1.1 MD07G1308000.v1.1 MD10G1042300.v1.1 MD10G1042400.v1.1 MD10G1042500.v1.1 MD10G1042700.v1.1
prunus_persica	Prupe.2G325200_v2.0.a1 Prupe.6G242000_v2.0.a1 Prupe.8G046800_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1
pyrus_communis	pycom01g24320 pycom01g24330 pycom07g28020 pycom10g02950 pycom17g03690
rosa_chinensis	RchiOBHm_Chr1g0384031 RchiOBHm_Chr2g0120941 RchiOBHm_Chr2g0120971 RchiOBHm_Chr2g0121051 RchiOBHm_Chr2g0121181 RchiOBHm_Chr2g0121211 RchiOBHm_Chr3g0473931 RchiOBHm_Chr3g0473941 RchiOBHm_Chr6g0257941 RchiOBHm_Chr6g0284781
rosa_laevigata	RLG00000008541 RLG00000014737 RLG00000018604 RLG00000018607 RLG00000018608 RLG00000018610 RLG00000018611 RLG00000018613 RLG00000023967 RLG00000023970 RLG00000026078 RLG00000035183
rosa_multiflora	Rmu_sc0000079.1_g000043 Rmu_sc0000079.1_g000062 Rmu_sc0000079.1_g000069 Rmu_sc0000621.1_g000019 Rmu_sc0000621.1_g000025 Rmu_sc0000621.1_g000041 Rmu_sc0000652.1_g000018 Rmu_sc0002414.1_g000030 Rmu_sc0002414.1_g000033 Rmu_sc0002843.1_g000016 Rmu_sc0005137.1_g000035 Rmu_sc0005139.1_g000021
rosa_roxburghii	Rroxscaffold_2G00122530 Rroxscaffold_2G00122570 Rroxscaffold_2G00122580 Rroxscaffold_2G00122650 Rroxscaffold_4G00277080 Rroxscaffold_6G00407610 Rroxscaffold_6G00407620 Rroxscaffold_7G00209050
rosa_rugosa	Rorug01G0444300 Rorug02G0232700 Rorug02G0232700 Rorug02G0232900 Rorug03G0137100 Rorug05G0565600 Rorug05G0566500
rosa_samantha	Rh1BG427300 Rh1CG440100 Rh2CG278100 Rh2CG278200 Rh2CG278700 Rh2CG278800 Rh2CG279100 Rh2DG314200 Rh2DG314300 Rh2DG314600 Rh3AG187200 Rh3DG211700 Rh3DG211800 Rh5AG356600 Rh6BG078000 Rh6BG078700 Rh6CG073300 Rh6DG070300 Rh6DG190200 Rh6DG274700 Rh7BG365900
rosa_wichuraiana	Rw0G018400 Rw1G040270 Rw2G023160 Rw2G023170 Rw2G023190 Rw2G023200 Rw2G023220 Rw2G023230 Rw3G017140 Rw3G017150 Rw4G012840 Rw6G007580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	86, 166
AgsI	TTSAA	1 cut(s)	58
AjnI	CCWGG	1 cut(s)	175
AleI	CACNNNNGTG	1 cut(s)	104
AluBI	AGCT	2 cut(s)	83, 92
AluI	AGCT	2 cut(s)	83, 92
Alw26I	GTCTC	2 cut(s)	124, 198
AoxI	GGCC	2 cut(s)	86, 166
ApeKI	GCWGC	1 cut(s)	138
Asp700I	GAANNNNTTC	1 cut(s)	62
AspS9I	GGNCC	1 cut(s)	179
AvaII	GGWCC	1 cut(s)	179
BalI	TGGCCA	2 cut(s)	88, 168
BbvI	GCAGC	1 cut(s)	150
BccI	CCATC	1 cut(s)	218
BciT130I	CCWGG	1 cut(s)	177
BcoDI	GTCTC	2 cut(s)	124, 198
BfmI	CTRYAG	1 cut(s)	136
BisI	GCNGC	1 cut(s)	139
BlsI	GCNGC	1 cut(s)	140
Bme1390I	CCNGG	1 cut(s)	177
Bme18I	GGWCC	1 cut(s)	179
BmgT120I	GGNCC	1 cut(s)	179
BmrFI	CCNGG	1 cut(s)	177
BmsI	GCATC	1 cut(s)	34
Bse1I	ACTGG	2 cut(s)	169, 263
Bse3DI	GCAATG	1 cut(s)	73
BseBI	CCWGG	1 cut(s)	177
BseMI	GCAATG	1 cut(s)	73
BseNI	ACTGG	2 cut(s)	169, 263
BseRI	GAGGAG	1 cut(s)	59
BseXI	GCAGC	1 cut(s)	150
BshFI	GGCC	2 cut(s)	88, 168
BsmAI	GTCTC	2 cut(s)	124, 198
BsnI	GGCC	2 cut(s)	88, 168
BspANI	GGCC	2 cut(s)	88, 168
BspMAI	CTGCAG	1 cut(s)	140
BsrDI	GCAATG	1 cut(s)	73
BsrI	ACTGG	2 cut(s)	169, 263
Bst2UI	CCWGG	1 cut(s)	177
Bst4CI	ACNGT	1 cut(s)	160
BstC8I	GCNNGC	2 cut(s)	23, 90
BstMAI	GTCTC	2 cut(s)	124, 198
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstNI	CCWGG	1 cut(s)	177
BstSCI	CCNGG	1 cut(s)	175
BstSFI	CTRYAG	1 cut(s)	136
BstV1I	GCAGC	1 cut(s)	150
BsuRI	GGCC	2 cut(s)	88, 168
BtsIMutI	CAGTG	1 cut(s)	256
Cac8I	GCNNGC	2 cut(s)	23, 90
Cfr13I	GGNCC	1 cut(s)	179
CviJI	RGCY	7 cut(s)	21, 53, 63, 83, 88, 92, 168
CviKI_1	RGCY	7 cut(s)	21, 53, 63, 83, 88, 92, 168
EaeI	YGGCCR	2 cut(s)	86, 166
Eco47I	GGWCC	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	175
FaiI	YATR	2 cut(s)	124, 192
FalI	AAGNNNNNCTT	2 cut(s)	137, 169
Fnu4HI	GCNGC	1 cut(s)	139
Fsp4HI	GCNGC	1 cut(s)	139
GluI	GCNGC	1 cut(s)	139
HaeIII	GGCC	2 cut(s)	88, 168
HindIII	AAGCTT	1 cut(s)	81
HinfI	GANTC	1 cut(s)	132
Hpy188III	TCNNGA	2 cut(s)	12, 154
Hpy99I	CGWCG	1 cut(s)	221
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4V	TGCA	3 cut(s)	25, 31, 138
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
LpnPI	CCDG	7 cut(s)	25, 35, 102, 162, 182, 189, 244
Lsp1109I	GCAGC	1 cut(s)	150
LweI	GCATC	1 cut(s)	34
MaeIII	GTNAC	2 cut(s)	95, 242
MlsI	TGGCCA	2 cut(s)	88, 168
MluCI	AATT	1 cut(s)	15
MluNI	TGGCCA	2 cut(s)	88, 168
MlyI	GAGTC	1 cut(s)	126
MnlI	CCTC	2 cut(s)	77, 80
Mox20I	TGGCCA	2 cut(s)	88, 168
MroXI	GAANNNNTTC	1 cut(s)	62
MscI	TGGCCA	2 cut(s)	88, 168
MseI	TTAA	1 cut(s)	228
MslI	CAYNNNNRTG	1 cut(s)	104
Msp20I	TGGCCA	2 cut(s)	88, 168
MspR9I	CCNGG	1 cut(s)	177
MvaI	CCWGG	1 cut(s)	177
MwoI	GCNNNNNNNGC	1 cut(s)	89
OliI	CACNNNNGTG	1 cut(s)	104
PdmI	GAANNNNTTC	1 cut(s)	62
PfoI	TCCNGGA	1 cut(s)	175
PkrI	GCNGC	1 cut(s)	140
PleI	GAGTC	1 cut(s)	126
PpsI	GAGTC	1 cut(s)	126
Psp6I	CCWGG	1 cut(s)	175
PspGI	CCWGG	1 cut(s)	175
PspPI	GGNCC	1 cut(s)	179
PstI	CTGCAG	1 cut(s)	140
RseI	CAYNNNNRTG	1 cut(s)	104
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	1 cut(s)	139
Sau96I	GGNCC	1 cut(s)	179
SchI	GAGTC	1 cut(s)	126
ScrFI	CCNGG	1 cut(s)	177
SetI	ASST	3 cut(s)	9, 85, 94
SfaNI	GCATC	1 cut(s)	34
SfcI	CTRYAG	1 cut(s)	136
SinI	GGWCC	1 cut(s)	179
SmiMI	CAYNNNNRTG	1 cut(s)	104
Sse9I	AATT	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	175
TaaI	ACNGT	1 cut(s)	160
TaqI	TCGA	1 cut(s)	219
TaqII	GACCGA	1 cut(s)	196
TasI	AATT	1 cut(s)	15
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	1 cut(s)	263
TseI	GCWGC	1 cut(s)	138
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	263
VpaK11BI	GGWCC	1 cut(s)	179
XmnI	GAANNNNTTC	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.