Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000359

Physical Location & Seq

Genomic Coordinates Forward (+)

30260281 .. 30267165

Gene Structure 6885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00407610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGAAGACGTTCTCATGTTCATAACAGAGGCAGATACAATATCACTATTCACTGAGGACAACTGCATGCATGGAGTCAAGCAACCGAGGAATCCATGGTCTGATCGTCCTGAATACATCACCCAATGTGGTATTCAACCCGGTGGGAGTTTCAGGCAGAAGATCATATTCTCTATTGAGGAAGGAACCCTTTGGTGGCATGCTCATAGTGATTGGTCCCGGGCGACGGTTCATGGAGCAATTTTTGTCTATCCAAAACCAGGAACTAGCTACCCTTTTCCCAAGCCCCATGCTGAAGTTCCCATAATATTAGGTCAATGGTGGAAAAGTGATGTAATGGAGGTACTTGATGAATTTGTTAGAACCGGAGGAACTCCCAATGTTTCTGATGCTTACACCATCAATGGTCAACCAGGAGACCTCTATACCTGCTCAAAATTAGAAACATTCAAACTTTCTGTGGACCAAAACAAGACCCATCTGCTCCGAATAATCAACGCTGCCATGAACAGCATCCTTTTCTTCTTAGTCGCAAACCATAACCTGACGGTGGTCGCAGCAGACGCAGCCTACACTGCGCCAATCTCAACACCCTACATCACAATATCTCCTGGACAAACCATTGATGCCCTGTTGTTCATAGACCAACAACCTGGTCGTTATTACATGGCTGCTAAGGCATACCAAGGTAACCTAGCGATTGGTTTTGACAACACCACATTACCACAACCACATCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0010023 GO:0010035 GO:0010038 GO:0016491 GO:0016722 GO:0017144 GO:0018130 GO:0018958 GO:0019438 GO:0019748 GO:0042221 GO:0043167 GO:0043169 GO:0044237 GO:0044249 GO:0044550 GO:0046189 GO:0046483 GO:0046688 GO:0046872 GO:0046914 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

246

Amino Acids

27.52

Weight (kDa)

5.39

Isoelectric Point (pI)

35.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase_3	PF07732	23 - 86	3.6e-16	Multicopper oxidase
Cu-oxidase	PF00394	99 - 240	1.4e-36	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48100
fragaria_vesca	FvH4_1g24380 FvH4_2g05800 FvH4_5g30730
malus_domestica	MD01G1234900.v1.1 MD01G1235100.v1.1 MD01G1235200.v1.1 MD07G1307400.v1.1 MD07G1308000.v1.1 MD10G1042300.v1.1 MD10G1042400.v1.1 MD10G1042500.v1.1 MD10G1042700.v1.1
prunus_persica	Prupe.2G325200_v2.0.a1 Prupe.6G242000_v2.0.a1 Prupe.8G046800_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1
pyrus_communis	pycom01g24320 pycom01g24330 pycom07g28020 pycom10g02950 pycom17g03690
rosa_chinensis	RchiOBHm_Chr1g0384031 RchiOBHm_Chr2g0120941 RchiOBHm_Chr2g0120971 RchiOBHm_Chr2g0121051 RchiOBHm_Chr2g0121181 RchiOBHm_Chr2g0121211 RchiOBHm_Chr3g0473931 RchiOBHm_Chr3g0473941 RchiOBHm_Chr6g0257941 RchiOBHm_Chr6g0284781
rosa_laevigata	RLG00000008541 RLG00000014737 RLG00000018604 RLG00000018607 RLG00000018608 RLG00000018610 RLG00000018611 RLG00000018613 RLG00000023967 RLG00000023970 RLG00000026078 RLG00000035183
rosa_multiflora	Rmu_sc0000079.1_g000043 Rmu_sc0000079.1_g000062 Rmu_sc0000079.1_g000069 Rmu_sc0000621.1_g000019 Rmu_sc0000621.1_g000025 Rmu_sc0000621.1_g000041 Rmu_sc0000652.1_g000018 Rmu_sc0002414.1_g000030 Rmu_sc0002414.1_g000033 Rmu_sc0002843.1_g000016 Rmu_sc0005137.1_g000035 Rmu_sc0005139.1_g000021
rosa_roxburghii	Rroxscaffold_2G00122530 Rroxscaffold_2G00122570 Rroxscaffold_2G00122580 Rroxscaffold_2G00122650 Rroxscaffold_4G00277080 Rroxscaffold_6G00407610 Rroxscaffold_6G00407620 Rroxscaffold_7G00209050
rosa_rugosa	Rorug01G0444300 Rorug02G0232700 Rorug02G0232700 Rorug02G0232900 Rorug03G0137100 Rorug05G0565600 Rorug05G0566500
rosa_samantha	Rh1BG427300 Rh1CG440100 Rh2CG278100 Rh2CG278200 Rh2CG278700 Rh2CG278800 Rh2CG279100 Rh2DG314200 Rh2DG314300 Rh2DG314600 Rh3AG187200 Rh3DG211700 Rh3DG211800 Rh5AG356600 Rh6BG078000 Rh6BG078700 Rh6CG073300 Rh6DG070300 Rh6DG190200 Rh6DG274700 Rh7BG365900
rosa_wichuraiana	Rw0G018400 Rw1G040270 Rw2G023160 Rw2G023170 Rw2G023190 Rw2G023200 Rw2G023220 Rw2G023230 Rw3G017140 Rw3G017150 Rw4G012840 Rw6G007580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	437
AcsI	RAATTY	1 cut(s)	353
AcuI	CTGAAG	1 cut(s)	315
AfaI	GTAC	1 cut(s)	345
AfiI	CCNNNNNNNGG	4 cut(s)	195, 226, 260, 550
AgsI	TTSAA	2 cut(s)	137, 451
AjnI	CCWGG	4 cut(s)	259, 412, 610, 652
AjuI	GAANNNNNNNTTGG	2 cut(s)	117, 149
AluBI	AGCT	1 cut(s)	270
AluI	AGCT	1 cut(s)	270
Alw26I	GTCTC	1 cut(s)	411
Ama87I	CYCGRG	1 cut(s)	219
ApeKI	GCWGC	4 cut(s)	500, 557, 566, 671
ApoI	RAATTY	1 cut(s)	353
Asp700I	GAANNNNTTC	1 cut(s)	9
AspLEI	GCGC	1 cut(s)	580
AspS9I	GGNCC	2 cut(s)	216, 463
AsuC2I	CCSGG	3 cut(s)	141, 220, 221
AsuHPI	GGTGA	1 cut(s)	112
AvaI	CYCGRG	1 cut(s)	219
AvaII	GGWCC	2 cut(s)	216, 463
BbsI	GAAGAC	1 cut(s)	12
BbvI	GCAGC	4 cut(s)	487, 569, 578, 658
BccI	CCATC	2 cut(s)	407, 486
BciT130I	CCWGG	4 cut(s)	261, 414, 612, 654
BcnI	CCSGG	3 cut(s)	141, 220, 221
BcoDI	GTCTC	1 cut(s)	411
BfaI	CTAG	2 cut(s)	267, 695
BfuAI	ACCTGC	1 cut(s)	437
BisI	GCNGC	4 cut(s)	501, 558, 567, 672
BlsI	GCNGC	4 cut(s)	502, 559, 568, 673
Bme1390I	CCNGG	7 cut(s)	141, 220, 221, 261, 414, 612, 654
Bme18I	GGWCC	2 cut(s)	216, 463
BmeT110I	CYCGRG	1 cut(s)	219
BmgT120I	GGNCC	2 cut(s)	216, 463
BmiI	GGNNCC	2 cut(s)	187, 218
BmrFI	CCNGG	7 cut(s)	141, 220, 221, 261, 414, 612, 654
BmsI	GCATC	3 cut(s)	379, 522, 616
BoxI	GACNNNNGTC	1 cut(s)	551
BpiI	GAAGAC	1 cut(s)	12
Bpu10I	CCTNAGC	1 cut(s)	675
BpuMI	CCSGG	3 cut(s)	141, 220, 221
BsaI	GGTCTC	1 cut(s)	411
BsaJI	CCNNGG	4 cut(s)	86, 95, 219, 685
BsaWI	WCCGGW	1 cut(s)	365
BsaXI	ACNNNNNCTCC	2 cut(s)	592, 622
Bsc4I	CCNNNNNNNGG	4 cut(s)	195, 226, 260, 550
BseBI	CCWGG	4 cut(s)	261, 414, 612, 654
BseDI	CCNNGG	4 cut(s)	86, 95, 219, 685
BseGI	GGATG	1 cut(s)	513
BseLI	CCNNNNNNNGG	4 cut(s)	195, 226, 260, 550
BseMII	CTCAG	1 cut(s)	45
BseXI	GCAGC	4 cut(s)	487, 569, 578, 658
BsiHKCI	CYCGRG	1 cut(s)	219
BsiSI	CCGG	3 cut(s)	141, 220, 366
BslFI	GGGAC	1 cut(s)	202
BslI	CCNNNNNNNGG	4 cut(s)	195, 226, 260, 550
BsmAI	GTCTC	1 cut(s)	411
BsmFI	GGGAC	1 cut(s)	202
Bso31I	GGTCTC	1 cut(s)	411
BsoBI	CYCGRG	1 cut(s)	219
Bsp143I	GATC	2 cut(s)	103, 162
Bsp19I	CCATGG	1 cut(s)	95
BspCNI	CTCAG	1 cut(s)	46
BspLI	GGNNCC	2 cut(s)	187, 218
BspMI	ACCTGC	1 cut(s)	437
BspTNI	GGTCTC	1 cut(s)	411
BssECI	CCNNGG	4 cut(s)	86, 95, 219, 685
BssMI	GATC	2 cut(s)	103, 162
BssT1I	CCWWGG	2 cut(s)	95, 685
Bst2UI	CCWGG	4 cut(s)	261, 414, 612, 654
Bst4CI	ACNGT	2 cut(s)	229, 550
BstC8I	GCNNGC	2 cut(s)	68, 201
BstDEI	CTNAG	3 cut(s)	54, 526, 675
BstDSI	CCRYGG	1 cut(s)	95
BstEII	GGTNACC	1 cut(s)	689
BstF5I	GGATG	1 cut(s)	513
BstHHI	GCGC	1 cut(s)	580
BstKTI	GATC	2 cut(s)	106, 165
BstMAI	GTCTC	1 cut(s)	411
BstMBI	GATC	2 cut(s)	103, 162
BstMWI	GCNNNNNNNGC	4 cut(s)	563, 566, 575, 677
BstNI	CCWGG	4 cut(s)	261, 414, 612, 654
BstNSI	RCATGY	2 cut(s)	70, 203
BstPAI	GACNNNNGTC	1 cut(s)	551
BstPI	GGTNACC	1 cut(s)	689
BstSCI	CCNGG	7 cut(s)	139, 218, 219, 259, 412, 610, 652
BstV1I	GCAGC	4 cut(s)	487, 569, 578, 658
BstV2I	GAAGAC	1 cut(s)	12
BstXI	CCANNNNNNTGG	1 cut(s)	653
BtgI	CCRYGG	1 cut(s)	95
BtsCI	GGATG	1 cut(s)	513
BtsI	GCAGTG	1 cut(s)	573
BtsIMutI	CAGTG	2 cut(s)	51, 573
BveI	ACCTGC	1 cut(s)	437
Cac8I	GCNNGC	2 cut(s)	68, 201
CfoI	GCGC	1 cut(s)	580
Cfr13I	GGNCC	2 cut(s)	216, 463
Cfr9I	CCCGGG	1 cut(s)	219
CseI	GACGC	1 cut(s)	572
CsiI	ACCWGGT	1 cut(s)	652
Csp6I	GTAC	1 cut(s)	344
CviAII	CATG	9 cut(s)	16, 67, 71, 96, 200, 233, 290, 505, 667
CviJI	RGCY	4 cut(s)	270, 286, 569, 671
CviKI_1	RGCY	4 cut(s)	270, 286, 569, 671
CviQI	GTAC	1 cut(s)	344
DdeI	CTNAG	3 cut(s)	54, 526, 675
DpnI	GATC	2 cut(s)	105, 164
DpnII	GATC	2 cut(s)	103, 162
Eco130I	CCWWGG	2 cut(s)	95, 685
Eco31I	GGTCTC	1 cut(s)	411
Eco47I	GGWCC	2 cut(s)	216, 463
Eco57I	CTGAAG	1 cut(s)	315
Eco88I	CYCGRG	1 cut(s)	219
Eco91I	GGTNACC	1 cut(s)	689
EcoO65I	GGTNACC	1 cut(s)	689
EcoRII	CCWGG	4 cut(s)	259, 412, 610, 652
EcoT14I	CCWWGG	2 cut(s)	95, 685
EcoT22I	ATGCAT	1 cut(s)	72
ErhI	CCWWGG	2 cut(s)	95, 685
FaeI	CATG	9 cut(s)	19, 70, 74, 99, 203, 236, 293, 508, 670
FalI	AAGNNNNNCTT	2 cut(s)	174, 206
FaqI	GGGAC	1 cut(s)	202
FatI	CATG	9 cut(s)	15, 66, 70, 95, 199, 232, 289, 504, 666
Fnu4HI	GCNGC	4 cut(s)	501, 558, 567, 672
FokI	GGATG	1 cut(s)	500
Fsp4HI	GCNGC	4 cut(s)	501, 558, 567, 672
FspBI	CTAG	2 cut(s)	267, 695
GlaI	GCGC	1 cut(s)	579
GluI	GCNGC	4 cut(s)	501, 558, 567, 672
HapII	CCGG	3 cut(s)	141, 220, 366
HgaI	GACGC	1 cut(s)	572
HhaI	GCGC	1 cut(s)	580
Hin1II	CATG	9 cut(s)	19, 70, 74, 99, 203, 236, 293, 508, 670
Hin6I	GCGC	1 cut(s)	578
HinP1I	GCGC	1 cut(s)	578
HincII	GTYRAC	1 cut(s)	410
HindII	GTYRAC	1 cut(s)	410
HinfI	GANTC	2 cut(s)	75, 91
HpaII	CCGG	3 cut(s)	141, 220, 366
HphI	GGTGA	1 cut(s)	112
Hpy166II	GTNNAC	2 cut(s)	410, 463
Hpy188I	TCNGA	3 cut(s)	103, 388, 488
Hpy188III	TCNNGA	1 cut(s)	110
Hpy8I	GTNNAC	2 cut(s)	410, 463
Hpy99I	CGWCG	1 cut(s)	229
HpyAV	CCTTC	1 cut(s)	176
HpyCH4III	ACNGT	2 cut(s)	229, 550
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	2 cut(s)	66, 70
HpyF10VI	GCNNNNNNNGC	4 cut(s)	563, 566, 575, 677
HpyF3I	CTNAG	3 cut(s)	54, 526, 675
HpySE526I	ACGT	1 cut(s)	9
Hsp92II	CATG	9 cut(s)	19, 70, 74, 99, 203, 236, 293, 508, 670
HspAI	GCGC	1 cut(s)	578
Kzo9I	GATC	2 cut(s)	103, 162
LmnI	GCTCC	2 cut(s)	236, 489
Lsp1109I	GCAGC	4 cut(s)	487, 569, 578, 658
LweI	GCATC	3 cut(s)	379, 522, 616
MabI	ACCWGGT	1 cut(s)	652
MaeI	CTAG	2 cut(s)	267, 695
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	1 cut(s)	689
MalI	GATC	2 cut(s)	105, 164
MboI	GATC	2 cut(s)	103, 162
MboII	GAAGA	3 cut(s)	17, 172, 514
MluCI	AATT	3 cut(s)	240, 353, 437
MlyI	GAGTC	1 cut(s)	84
MnlI	CCTC	7 cut(s)	22, 49, 81, 172, 334, 362, 431
Mph1103I	ATGCAT	1 cut(s)	72
MroXI	GAANNNNTTC	1 cut(s)	9
MspI	CCGG	3 cut(s)	141, 220, 366
MspR9I	CCNGG	7 cut(s)	141, 220, 221, 261, 414, 612, 654
MvaI	CCWGG	4 cut(s)	261, 414, 612, 654
MwoI	GCNNNNNNNGC	4 cut(s)	563, 566, 575, 677
NciI	CCSGG	3 cut(s)	141, 220, 221
NcoI	CCATGG	1 cut(s)	95
NdeII	GATC	2 cut(s)	103, 162
NlaIII	CATG	9 cut(s)	19, 70, 74, 99, 203, 236, 293, 508, 670
NlaIV	GGNNCC	2 cut(s)	187, 218
NsiI	ATGCAT	1 cut(s)	72
NspI	RCATGY	2 cut(s)	70, 203
PaeI	GCATGC	2 cut(s)	70, 203
PdmI	GAANNNNTTC	1 cut(s)	9
PfeI	GAWTC	1 cut(s)	91
PfoI	TCCNGGA	1 cut(s)	610
PkrI	GCNGC	4 cut(s)	502, 559, 568, 673
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
PshAI	GACNNNNGTC	1 cut(s)	551
Psp6I	CCWGG	4 cut(s)	259, 412, 610, 652
PspEI	GGTNACC	1 cut(s)	689
PspGI	CCWGG	4 cut(s)	259, 412, 610, 652
PspN4I	GGNNCC	2 cut(s)	187, 218
PspPI	GGNCC	2 cut(s)	216, 463
RsaI	GTAC	1 cut(s)	345
RsaNI	GTAC	1 cut(s)	344
SatI	GCNGC	4 cut(s)	501, 558, 567, 672
Sau3AI	GATC	2 cut(s)	103, 162
Sau96I	GGNCC	2 cut(s)	216, 463
SchI	GAGTC	1 cut(s)	84
ScrFI	CCNGG	7 cut(s)	141, 220, 221, 261, 414, 612, 654
SexAI	ACCWGGT	1 cut(s)	652
SfaNI	GCATC	3 cut(s)	379, 522, 616
SinI	GGWCC	2 cut(s)	216, 463
SmaI	CCCGGG	1 cut(s)	221
SphI	GCATGC	2 cut(s)	70, 203
Sse9I	AATT	3 cut(s)	240, 353, 437
SspI	AATATT	1 cut(s)	309
SspMI	CTAG	2 cut(s)	267, 695
StyD4I	CCNGG	7 cut(s)	139, 218, 219, 259, 412, 610, 652
StyI	CCWWGG	2 cut(s)	95, 685
TaaI	ACNGT	2 cut(s)	229, 550
TaiI	ACGT	1 cut(s)	12
TasI	AATT	3 cut(s)	240, 353, 437
TfiI	GAWTC	1 cut(s)	91
TscAI	CASTG	2 cut(s)	58, 580
TseI	GCWGC	4 cut(s)	500, 557, 566, 671
TspDTI	ATGAA	5 cut(s)	10, 221, 366, 521, 628
TspMI	CCCGGG	1 cut(s)	219
TspRI	CASTG	2 cut(s)	58, 580
VpaK11BI	GGWCC	2 cut(s)	216, 463
XapI	RAATTY	1 cut(s)	353
XceI	RCATGY	2 cut(s)	70, 203
XmaI	CCCGGG	1 cut(s)	219
XmnI	GAANNNNTTC	1 cut(s)	9
XspI	CTAG	2 cut(s)	267, 695
Zsp2I	ATGCAT	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.