Lignin degradation and detoxification of lignin-derived products
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 90, 189 |
| AccII | CGCG | 1 cut(s) | 656 |
| AciI | CCGC | 1 cut(s) | 654 |
| AcsI | RAATTY | 2 cut(s) | 161, 431 |
| AcuI | CTGAAG | 2 cut(s) | 17, 63 |
| AdeI | CACNNNGTG | 1 cut(s) | 311 |
| AfaI | GTAC | 2 cut(s) | 57, 423 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 378, 628, 1616 |
| AhlI | ACTAGT | 1 cut(s) | 52 |
| AjnI | CCWGG | 3 cut(s) | 490, 688, 730 |
| AluBI | AGCT | 2 cut(s) | 77, 185 |
| AluI | AGCT | 2 cut(s) | 77, 185 |
| Alw26I | GTCTC | 1 cut(s) | 489 |
| ApeKI | GCWGC | 6 cut(s) | 129, 578, 635, 644, 749, 1502 |
| ApoI | RAATTY | 2 cut(s) | 161, 431 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1582 |
| AspLEI | GCGC | 1 cut(s) | 658 |
| AspS9I | GGNCC | 4 cut(s) | 170, 290, 541, 1637 |
| AsuC2I | CCSGG | 2 cut(s) | 168, 324 |
| AsuHPI | GGTGA | 1 cut(s) | 1609 |
| AvaII | GGWCC | 4 cut(s) | 170, 290, 541, 1637 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 48, 80 |
| BbvI | GCAGC | 6 cut(s) | 141, 565, 647, 656, 736, 1514 |
| BciT130I | CCWGG | 3 cut(s) | 492, 690, 732 |
| BcnI | CCSGG | 2 cut(s) | 168, 324 |
| BcoDI | GTCTC | 1 cut(s) | 489 |
| BcuI | ACTAGT | 1 cut(s) | 52 |
| BfaI | CTAG | 4 cut(s) | 53, 753, 773, 1535 |
| BisI | GCNGC | 6 cut(s) | 130, 579, 636, 645, 750, 1503 |
| BlsI | GCNGC | 6 cut(s) | 131, 580, 637, 646, 751, 1504 |
| BmcAI | AGTACT | 1 cut(s) | 57 |
| Bme1390I | CCNGG | 5 cut(s) | 168, 324, 492, 690, 732 |
| Bme18I | GGWCC | 4 cut(s) | 170, 290, 541, 1637 |
| BmgT120I | GGNCC | 4 cut(s) | 170, 290, 541, 1637 |
| BmiI | GGNNCC | 3 cut(s) | 171, 370, 1639 |
| BmrFI | CCNGG | 5 cut(s) | 168, 324, 492, 690, 732 |
| BmsI | GCATC | 3 cut(s) | 457, 600, 694 |
| BoxI | GACNNNNGTC | 1 cut(s) | 629 |
| BpuMI | CCSGG | 2 cut(s) | 168, 324 |
| BsaI | GGTCTC | 1 cut(s) | 489 |
| BsaJI | CCNNGG | 4 cut(s) | 269, 278, 763, 1615 |
| BsaWI | WCCGGW | 1 cut(s) | 443 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 186, 216, 670, 700 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 378, 628, 1616 |
| Bse1I | ACTGG | 2 cut(s) | 173, 254 |
| Bse3DI | GCAATG | 1 cut(s) | 835 |
| BseBI | CCWGG | 3 cut(s) | 492, 690, 732 |
| BseDI | CCNNGG | 4 cut(s) | 269, 278, 763, 1615 |
| BseGI | GGATG | 1 cut(s) | 591 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 378, 628, 1616 |
| BseMI | GCAATG | 1 cut(s) | 835 |
| BseMII | CTCAG | 1 cut(s) | 618 |
| BseNI | ACTGG | 2 cut(s) | 173, 254 |
| BseXI | GCAGC | 6 cut(s) | 141, 565, 647, 656, 736, 1514 |
| BsgI | GTGCAG | 1 cut(s) | 148 |
| Bsh1236I | CGCG | 1 cut(s) | 656 |
| BsiSI | CCGG | 3 cut(s) | 167, 323, 444 |
| BslFI | GGGAC | 2 cut(s) | 183, 1660 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 378, 628, 1616 |
| BsmAI | GTCTC | 1 cut(s) | 489 |
| BsmFI | GGGAC | 2 cut(s) | 183, 1660 |
| BsmI | GAATGC | 1 cut(s) | 1504 |
| Bso31I | GGTCTC | 1 cut(s) | 489 |
| Bsp143I | GATC | 1 cut(s) | 345 |
| Bsp19I | CCATGG | 1 cut(s) | 278 |
| BspACI | CCGC | 1 cut(s) | 654 |
| BspCNI | CTCAG | 1 cut(s) | 617 |
| BspFNI | CGCG | 1 cut(s) | 656 |
| BspLI | GGNNCC | 3 cut(s) | 171, 370, 1639 |
| BspTNI | GGTCTC | 1 cut(s) | 489 |
| BsrDI | GCAATG | 1 cut(s) | 835 |
| BsrI | ACTGG | 2 cut(s) | 173, 254 |
| BssECI | CCNNGG | 4 cut(s) | 269, 278, 763, 1615 |
| BssMI | GATC | 1 cut(s) | 345 |
| BssT1I | CCWWGG | 3 cut(s) | 278, 763, 1615 |
| Bst2UI | CCWGG | 3 cut(s) | 492, 690, 732 |
| Bst4CI | ACNGT | 4 cut(s) | 151, 202, 628, 1591 |
| Bst6I | CTCTTC | 1 cut(s) | 65 |
| BstC8I | GCNNGC | 1 cut(s) | 384 |
| BstDEI | CTNAG | 3 cut(s) | 12, 135, 604 |
| BstDSI | CCRYGG | 1 cut(s) | 278 |
| BstEII | GGTNACC | 1 cut(s) | 767 |
| BstF5I | GGATG | 1 cut(s) | 591 |
| BstFNI | CGCG | 1 cut(s) | 656 |
| BstHHI | GCGC | 1 cut(s) | 658 |
| BstKTI | GATC | 1 cut(s) | 348 |
| BstMAI | GTCTC | 1 cut(s) | 489 |
| BstMBI | GATC | 1 cut(s) | 345 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 35, 641, 644, 653, 755, 1530 |
| BstNI | CCWGG | 3 cut(s) | 492, 690, 732 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 629 |
| BstPI | GGTNACC | 1 cut(s) | 767 |
| BstSCI | CCNGG | 5 cut(s) | 166, 322, 490, 688, 730 |
| BstUI | CGCG | 1 cut(s) | 656 |
| BstV1I | GCAGC | 6 cut(s) | 141, 565, 647, 656, 736, 1514 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 731, 1579 |
| BtgI | CCRYGG | 1 cut(s) | 278 |
| BtgZI | GCGATG | 1 cut(s) | 53 |
| BtsCI | GGATG | 1 cut(s) | 591 |
| Cac8I | GCNNGC | 1 cut(s) | 384 |
| CfoI | GCGC | 1 cut(s) | 658 |
| Cfr13I | GGNCC | 4 cut(s) | 170, 290, 541, 1637 |
| CseI | GACGC | 2 cut(s) | 650, 1657 |
| CsiI | ACCWGGT | 1 cut(s) | 730 |
| Csp6I | GTAC | 2 cut(s) | 56, 422 |
| CviAII | CATG | 4 cut(s) | 254, 279, 583, 745 |
| CviQI | GTAC | 2 cut(s) | 56, 422 |
| DdeI | CTNAG | 3 cut(s) | 12, 135, 604 |
| DpnI | GATC | 1 cut(s) | 347 |
| DpnII | GATC | 1 cut(s) | 345 |
| DraIII | CACNNNGTG | 1 cut(s) | 311 |
| Eam1104I | CTCTTC | 1 cut(s) | 65 |
| EarI | CTCTTC | 1 cut(s) | 65 |
| Eco130I | CCWWGG | 3 cut(s) | 278, 763, 1615 |
| Eco31I | GGTCTC | 1 cut(s) | 489 |
| Eco47I | GGWCC | 4 cut(s) | 170, 290, 541, 1637 |
| Eco57I | CTGAAG | 2 cut(s) | 17, 63 |
| Eco91I | GGTNACC | 1 cut(s) | 767 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1637 |
| EcoO65I | GGTNACC | 1 cut(s) | 767 |
| EcoRII | CCWGG | 3 cut(s) | 490, 688, 730 |
| EcoT14I | CCWWGG | 3 cut(s) | 278, 763, 1615 |
| ErhI | CCWWGG | 3 cut(s) | 278, 763, 1615 |
| FaeI | CATG | 4 cut(s) | 257, 282, 586, 748 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 357, 389 |
| FaqI | GGGAC | 2 cut(s) | 183, 1660 |
| FatI | CATG | 4 cut(s) | 253, 278, 582, 744 |
| Fnu4HI | GCNGC | 6 cut(s) | 130, 579, 636, 645, 750, 1503 |
| FokI | GGATG | 1 cut(s) | 578 |
| Fsp4HI | GCNGC | 6 cut(s) | 130, 579, 636, 645, 750, 1503 |
| FspBI | CTAG | 4 cut(s) | 53, 753, 773, 1535 |
| GlaI | GCGC | 1 cut(s) | 657 |
| GluI | GCNGC | 6 cut(s) | 130, 579, 636, 645, 750, 1503 |
| HapII | CCGG | 3 cut(s) | 167, 323, 444 |
| HgaI | GACGC | 2 cut(s) | 650, 1657 |
| HhaI | GCGC | 1 cut(s) | 658 |
| Hin1II | CATG | 4 cut(s) | 257, 282, 586, 748 |
| Hin6I | GCGC | 1 cut(s) | 656 |
| HinP1I | GCGC | 1 cut(s) | 656 |
| HincII | GTYRAC | 2 cut(s) | 488, 574 |
| HindII | GTYRAC | 2 cut(s) | 488, 574 |
| HindIII | AAGCTT | 1 cut(s) | 75 |
| HinfI | GANTC | 3 cut(s) | 107, 258, 274 |
| HpaII | CCGG | 3 cut(s) | 167, 323, 444 |
| HphI | GGTGA | 1 cut(s) | 1609 |
| Hpy166II | GTNNAC | 5 cut(s) | 488, 541, 574, 717, 1600 |
| Hpy188I | TCNGA | 4 cut(s) | 286, 466, 520, 566 |
| Hpy188III | TCNNGA | 2 cut(s) | 100, 293 |
| Hpy8I | GTNNAC | 5 cut(s) | 488, 541, 574, 717, 1600 |
| HpyAV | CCTTC | 4 cut(s) | 74, 359, 1487, 1628 |
| HpyCH4III | ACNGT | 4 cut(s) | 151, 202, 628, 1591 |
| HpyCH4V | TGCA | 2 cut(s) | 129, 1502 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 35, 641, 644, 653, 755, 1530 |
| HpyF3I | CTNAG | 3 cut(s) | 12, 135, 604 |
| Hsp92II | CATG | 4 cut(s) | 257, 282, 586, 748 |
| HspAI | GCGC | 1 cut(s) | 656 |
| Kzo9I | GATC | 1 cut(s) | 345 |
| Lsp1109I | GCAGC | 6 cut(s) | 141, 565, 647, 656, 736, 1514 |
| LweI | GCATC | 3 cut(s) | 457, 600, 694 |
| MabI | ACCWGGT | 1 cut(s) | 730 |
| MaeI | CTAG | 4 cut(s) | 53, 753, 773, 1535 |
| MaeIII | GTNAC | 1 cut(s) | 767 |
| MalI | GATC | 1 cut(s) | 347 |
| MboI | GATC | 1 cut(s) | 345 |
| MboII | GAAGA | 3 cut(s) | 52, 355, 592 |
| MlyI | GAGTC | 1 cut(s) | 267 |
| MnlI | CCTC | 6 cut(s) | 218, 264, 355, 412, 440, 509 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1582 |
| MseI | TTAA | 5 cut(s) | 153, 179, 1527, 1542, 1670 |
| MslI | CAYNNNNRTG | 2 cut(s) | 252, 1577 |
| MspI | CCGG | 3 cut(s) | 167, 323, 444 |
| MspR9I | CCNGG | 5 cut(s) | 168, 324, 492, 690, 732 |
| Mva1269I | GAATGC | 1 cut(s) | 1504 |
| MvaI | CCWGG | 3 cut(s) | 492, 690, 732 |
| MvnI | CGCG | 1 cut(s) | 656 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 35, 641, 644, 653, 755, 1530 |
| NciI | CCSGG | 2 cut(s) | 168, 324 |
| NcoI | CCATGG | 1 cut(s) | 278 |
| NdeII | GATC | 1 cut(s) | 345 |
| NlaIII | CATG | 4 cut(s) | 257, 282, 586, 748 |
| NlaIV | GGNNCC | 3 cut(s) | 171, 370, 1639 |
| PctI | GAATGC | 1 cut(s) | 1504 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1582 |
| PfeI | GAWTC | 2 cut(s) | 107, 274 |
| PfoI | TCCNGGA | 2 cut(s) | 166, 688 |
| PkrI | GCNGC | 6 cut(s) | 131, 580, 637, 646, 751, 1504 |
| PleI | GAGTC | 1 cut(s) | 266 |
| PpsI | GAGTC | 1 cut(s) | 266 |
| PpuMI | RGGWCCY | 1 cut(s) | 1637 |
| PshAI | GACNNNNGTC | 1 cut(s) | 629 |
| PsiI | TTATAA | 2 cut(s) | 90, 189 |
| Psp5II | RGGWCCY | 1 cut(s) | 1637 |
| Psp6I | CCWGG | 3 cut(s) | 490, 688, 730 |
| PspEI | GGTNACC | 1 cut(s) | 767 |
| PspGI | CCWGG | 3 cut(s) | 490, 688, 730 |
| PspN4I | GGNNCC | 3 cut(s) | 171, 370, 1639 |
| PspPI | GGNCC | 4 cut(s) | 170, 290, 541, 1637 |
| PspPPI | RGGWCCY | 1 cut(s) | 1637 |
| RsaI | GTAC | 2 cut(s) | 57, 423 |
| RsaNI | GTAC | 2 cut(s) | 56, 422 |
| RseI | CAYNNNNRTG | 2 cut(s) | 252, 1577 |
| SaqAI | TTAA | 5 cut(s) | 153, 179, 1527, 1542, 1670 |
| SatI | GCNGC | 6 cut(s) | 130, 579, 636, 645, 750, 1503 |
| Sau3AI | GATC | 1 cut(s) | 345 |
| Sau96I | GGNCC | 4 cut(s) | 170, 290, 541, 1637 |
| ScaI | AGTACT | 1 cut(s) | 57 |
| SchI | GAGTC | 1 cut(s) | 267 |
| ScrFI | CCNGG | 5 cut(s) | 168, 324, 492, 690, 732 |
| SexAI | ACCWGGT | 1 cut(s) | 730 |
| SfaNI | GCATC | 3 cut(s) | 457, 600, 694 |
| SinI | GGWCC | 4 cut(s) | 170, 290, 541, 1637 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 252, 1577 |
| SpeI | ACTAGT | 1 cut(s) | 52 |
| SsiI | CCGC | 1 cut(s) | 654 |
| SspI | AATATT | 1 cut(s) | 144 |
| SspMI | CTAG | 4 cut(s) | 53, 753, 773, 1535 |
| StyD4I | CCNGG | 5 cut(s) | 166, 322, 490, 688, 730 |
| StyI | CCWWGG | 3 cut(s) | 278, 763, 1615 |
| TaaI | ACNGT | 4 cut(s) | 151, 202, 628, 1591 |
| TaqI | TCGA | 1 cut(s) | 1576 |
| TatI | WGTACW | 1 cut(s) | 55 |
| TfiI | GAWTC | 2 cut(s) | 107, 274 |
| Tru1I | TTAA | 5 cut(s) | 153, 179, 1527, 1542, 1670 |
| Tru9I | TTAA | 5 cut(s) | 153, 179, 1527, 1542, 1670 |
| TseI | GCWGC | 6 cut(s) | 129, 578, 635, 644, 749, 1502 |
| TspDTI | ATGAA | 4 cut(s) | 56, 206, 444, 599 |
| VpaK11BI | GGWCC | 4 cut(s) | 170, 290, 541, 1637 |
| XapI | RAATTY | 2 cut(s) | 161, 431 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1576 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1582 |
| XspI | CTAG | 4 cut(s) | 53, 753, 773, 1535 |
| ZrmI | AGTACT | 1 cut(s) | 57 |