Rh2DG314600

Lignin degradation and detoxification of lignin-derived products

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
38785131 .. 38787360
2230 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG314600.1

Sequence Viewer

Length: 1713 bp
ATGAAGGTTTCCAGAATTAGCCTGCATCTGCAACTTTTGGGGTTGTTATTGGCTGTTAATGGCTTCCTCCTCCATTGCCAAGCTTGGCCAGCTCGTTACACTTTTGTGGTGGAAAACACTCCATACAAAAGACTCTGCAGCACAAAGAACATCTTGACTGTAAATGGCCAGTTTCCGGGACCGGCTTTGCAAGTTCATAAAGGACACACTATCATCGTCGATGTCTTTAACAAAGGCAATCGTAACATTACCATTCACTGGCATGGTGTTGCGCAACCAAGAAATCCATGGTCGGACGGACCAGAGTATATCACACAATGCCCAATTCAACCGGGAGCCAAGTTCACCCAAAAGATCATTTTCTCAAAGGAGCAGGAAGGCACCCTTTGGTGGCATGCTCACAGTGAGTGGGATCGAGCCACTGTCCACGGTCCCATCATCATATACCCCAACAAGAAGAAGAATTACCCTTTTGGCAAGCCTCATGCAGAAATTCCAATCATATTGGGAGAGTGGTGGAAGGTAGATATAGGGAACCTTTATACTCAAACTCTTCAAGCCGGAGGGGATCCTAATACTTCCGACGCTTATCTCATCAATGGTCAACCTGGCGATCTGTATCCATGCTCTAAATCAGAGACGTTCAAGGTGATGGTTGATTATGGCAAAACCTACCTACTGAGACTAATCAACTCCGGTCTGCAAGAGATTCTGTTTTTCGCCATCGCCAATCACAAAGTCACAGTCGTAGGAACAGATGCTAGCTACACCAAGCCTTTCACAACGGATTATGTCACCATCTCACCTGGTCAAACCATTGACCTTTTGCTCCATGCTAATCAGAGGCCTAACCACTACTACATGGCCGCTACAGCCTACGTAGGTGGCGCTGTTCCTTATGATAACACCACCACCACAGCCCTACTACAATACAAGAATCGGGGTTACACCCCTTCTTCAACCCCTTTCTTTCCTAATCTTCCTGCTCACAATGACACTAATGCATCAGTTCATTTTAGTGGTAGTCTCAGGAGCTTGGCTGATAAAAACCATCCCATTGACGTTCCACTAAAAATTACAACTCCCTTGTTTTATACCGTCTCCGTCAACACGTTCCAGTGCCCCAATAATTCATGTGCTGGGCCTAACGGGACGCGTCTGGCCGCTAGTGTAAACAACATTAGCTTTGTGAACCCTAGCATTGACATACTACAAGCTTACTATTACCATGTCAACGGGGTATTTGGAACTCGGTTTCCAGATTTCCCGCCTTTGCTGTTTAACTTTACAGCACAGTACTTGCCACTGTACCTTCAGACCCCAAAACGAGGGACAGAGGTGCAGGTACTGGAGTACAACGCGACAGTGGAGCTTGTGTTTCAGGGGACTAATTTGGTGGCAGGGGATGACCATCCAATGCATCTTCATGGTTACAGTTTCTATGTGGTTGGATTGGGGCTTGGGAACTTTGACAAGGATAAGGACCCTTTGAAATACAATCTTGTTGATCCTCCTCTTCAAAACACCATTGCAGTCCCTGTAAATGGGTGGACTACCATCAGATTCAAGGCTGACAATCCTGGAGTTTGGTTTATGCATTGCCATCTGGATAGGCATATGTCATGGGGCATGGATACGACATTTATAGTAAAAAATGGAAAGGGACCTAAAGCTCAAATCTTACCTCCACCACCAGATATGCCACCTTGCTGA

Protein Analysis

570

Amino Acids

63.73

Weight (kDa)

8.55

Isoelectric Point (pI)

33.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 37 - 152 7.5e-39 Multicopper oxidase
Cu-oxidase PF00394 165 - 313 6.3e-40 Multicopper oxidase
Cu-oxidase_2 PF07731 422 - 553 7.8e-41 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000359)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48100
fragaria_vesca FvH4_1g24380 FvH4_2g05800 FvH4_5g30730
malus_domestica MD01G1234900.v1.1 MD01G1235100.v1.1 MD01G1235200.v1.1 MD07G1307400.v1.1 MD07G1308000.v1.1 MD10G1042300.v1.1 MD10G1042400.v1.1 MD10G1042500.v1.1 MD10G1042700.v1.1
prunus_persica Prupe.2G325200_v2.0.a1 Prupe.6G242000_v2.0.a1 Prupe.8G046800_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1
pyrus_communis pycom01g24320 pycom01g24330 pycom07g28020 pycom10g02950 pycom17g03690
rosa_chinensis RchiOBHm_Chr1g0384031 RchiOBHm_Chr2g0120941 RchiOBHm_Chr2g0120971 RchiOBHm_Chr2g0121051 RchiOBHm_Chr2g0121181 RchiOBHm_Chr2g0121211 RchiOBHm_Chr3g0473931 RchiOBHm_Chr3g0473941 RchiOBHm_Chr6g0257941 RchiOBHm_Chr6g0284781
rosa_laevigata RLG00000008541 RLG00000014737 RLG00000018604 RLG00000018607 RLG00000018608 RLG00000018610 RLG00000018611 RLG00000018613 RLG00000023967 RLG00000023970 RLG00000026078 RLG00000035183
rosa_multiflora Rmu_sc0000079.1_g000043 Rmu_sc0000079.1_g000062 Rmu_sc0000079.1_g000069 Rmu_sc0000621.1_g000019 Rmu_sc0000621.1_g000025 Rmu_sc0000621.1_g000041 Rmu_sc0000652.1_g000018 Rmu_sc0002414.1_g000030 Rmu_sc0002414.1_g000033 Rmu_sc0002843.1_g000016 Rmu_sc0005137.1_g000035 Rmu_sc0005139.1_g000021
rosa_roxburghii Rroxscaffold_2G00122530 Rroxscaffold_2G00122570 Rroxscaffold_2G00122580 Rroxscaffold_2G00122650 Rroxscaffold_4G00277080 Rroxscaffold_6G00407610 Rroxscaffold_6G00407620 Rroxscaffold_7G00209050
rosa_rugosa Rorug01G0444300 Rorug02G0232700 Rorug02G0232700 Rorug02G0232900 Rorug03G0137100 Rorug05G0565600 Rorug05G0566500
rosa_samantha Rh1BG427300 Rh1CG440100 Rh2CG278100 Rh2CG278200 Rh2CG278700 Rh2CG278800 Rh2CG279100 Rh2DG314200 Rh2DG314300 Rh2DG314600 Rh3AG187200 Rh3DG211700 Rh3DG211800 Rh5AG356600 Rh6BG078000 Rh6BG078700 Rh6CG073300 Rh6DG070300 Rh6DG190200 Rh6DG274700 Rh7BG365900
rosa_wichuraiana Rw0G018400 Rw1G040270 Rw2G023160 Rw2G023170 Rw2G023190 Rw2G023200 Rw2G023220 Rw2G023230 Rw3G017140 Rw3G017150 Rw4G012840 Rw6G007580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 273
Acc36I ACCTGC 1 cut(s) 1333
AccB1I GGYRCC 1 cut(s) 380
AccB7I CCANNNNNTGG 1 cut(s) 258
AccII CGCG 2 cut(s) 1156, 1361
AciI CCGC 3 cut(s) 867, 1164, 1268
AclWI GGATC 4 cut(s) 420, 563, 576, 1502
AcoI YGGCCR 4 cut(s) 86, 166, 864, 1161
AcsI RAATTY 1 cut(s) 492
AcuI CTGAAG 1 cut(s) 1298
AfaI GTAC 4 cut(s) 1298, 1310, 1347, 1355
AfiI CCNNNNNNNGG 5 cut(s) 175, 258, 390, 1328, 1544
AflIII ACRYGT 2 cut(s) 1110, 1154
AgsI TTSAA 7 cut(s) 329, 557, 646, 960, 1492, 1520, 1567
AjnI CCWGG 3 cut(s) 607, 805, 1579
AleI CACNNNNGTG 1 cut(s) 104
AloI GAACNNNNNNTCC 2 cut(s) 1240, 1272
AluBI AGCT 8 cut(s) 83, 92, 765, 1035, 1185, 1217, 1372, 1673
AluI AGCT 8 cut(s) 83, 92, 765, 1035, 1185, 1217, 1372, 1673
Alw26I GTCTC 4 cut(s) 632, 676, 1031, 1105
AlwI GGATC 4 cut(s) 420, 563, 576, 1502
AlwNI CAGNNNCTG 2 cut(s) 1348, 1538
AoxI GGCC 6 cut(s) 86, 166, 845, 864, 1142, 1161
ApeKI GCWGC 1 cut(s) 138
ApoI RAATTY 1 cut(s) 492
ArsI GACNNNNNNTTYG 2 cut(s) 729, 761
AspLEI GCGC 2 cut(s) 274, 890
AspS9I GGNCC 6 cut(s) 179, 299, 431, 1142, 1483, 1664
AsuC2I CCSGG 2 cut(s) 177, 333
AsuHPI GGTGA 4 cut(s) 337, 661, 787, 795
AsuNHI GCTAGC 1 cut(s) 761
AvaII GGWCC 5 cut(s) 179, 299, 431, 1483, 1664
BaeGI GKGCMC 1 cut(s) 1124
BaeI ACNNNNGTAYC 2 cut(s) 1337, 1370
BalI TGGCCA 2 cut(s) 88, 168
BamHI GGATCC 1 cut(s) 568
BanI GGYRCC 1 cut(s) 380
BarI GAAGNNNNNNTAC 2 cut(s) 449, 481
BbvI GCAGC 1 cut(s) 150
BccI CCATC 8 cut(s) 443, 646, 731, 806, 1059, 1419, 1565, 1611
BciT130I CCWGG 3 cut(s) 609, 807, 1581
BciVI GTATCC 2 cut(s) 630, 1627
BcnI CCSGG 2 cut(s) 177, 333
BcoDI GTCTC 4 cut(s) 632, 676, 1031, 1105
BfaI CTAG 3 cut(s) 762, 1167, 1197
BfmI CTRYAG 2 cut(s) 136, 870
BfoI RGCGCY 1 cut(s) 891
BfuAI ACCTGC 1 cut(s) 1333
BfuI GTATCC 2 cut(s) 630, 1627
BisI GCNGC 3 cut(s) 139, 867, 1164
BlsI GCNGC 3 cut(s) 140, 868, 1165
BmcAI AGTACT 1 cut(s) 1298
Bme1390I CCNGG 5 cut(s) 177, 333, 609, 807, 1581
Bme18I GGWCC 5 cut(s) 179, 299, 431, 1483, 1664
BmgT120I GGNCC 6 cut(s) 179, 299, 431, 1142, 1483, 1664
BmiI GGNNCC 8 cut(s) 180, 337, 382, 433, 536, 570, 1485, 1665
BmrFI CCNGG 5 cut(s) 177, 333, 609, 807, 1581
BmsI GCATC 4 cut(s) 34, 748, 1013, 1429
BmtI GCTAGC 1 cut(s) 765
BpmI CTGGAG 2 cut(s) 1370, 1602
BpuMI CCSGG 2 cut(s) 177, 333
BsaAI YACGTR 1 cut(s) 880
BsaBI GATNNNNATC 2 cut(s) 618, 1410
BsaJI CCNNGG 2 cut(s) 287, 427
BsaWI WCCGGW 1 cut(s) 695
BsaXI ACNNNNNCTCC 2 cut(s) 1361, 1391
Bsc4I CCNNNNNNNGG 5 cut(s) 175, 258, 390, 1328, 1544
Bse118I RCCGGY 1 cut(s) 181
Bse1I ACTGG 4 cut(s) 169, 263, 1117, 1353
Bse3DI GCAATG 3 cut(s) 73, 1527, 1597
Bse8I GATNNNNATC 2 cut(s) 618, 1410
BseBI CCWGG 3 cut(s) 609, 807, 1581
BseDI CCNNGG 2 cut(s) 287, 427
BseGI GGATG 3 cut(s) 1051, 1411, 1411
BseJI GATNNNNATC 2 cut(s) 618, 1410
BseLI CCNNNNNNNGG 5 cut(s) 175, 258, 390, 1328, 1544
BseMI GCAATG 3 cut(s) 73, 1527, 1597
BseMII CTCAG 2 cut(s) 671, 1042
BseNI ACTGG 4 cut(s) 169, 263, 1117, 1353
BseRI GAGGAG 2 cut(s) 59, 1503
BseSI GKGCMC 1 cut(s) 1124
BseXI GCAGC 1 cut(s) 150
BseYI CCCAGC 1 cut(s) 1139
BsgI GTGCAG 1 cut(s) 1361
Bsh1236I CGCG 2 cut(s) 1156, 1361
BshFI GGCC 6 cut(s) 88, 168, 847, 866, 1144, 1163
BshNI GGYRCC 1 cut(s) 380
BsiSI CCGG 5 cut(s) 176, 182, 332, 561, 696
BslFI GGGAC 7 cut(s) 192, 417, 1165, 1345, 1399, 1520, 1677
BslI CCNNNNNNNGG 5 cut(s) 175, 258, 390, 1328, 1544
BsmAI GTCTC 4 cut(s) 632, 676, 1031, 1105
BsmBI CGTCTC 2 cut(s) 632, 1105
BsmFI GGGAC 7 cut(s) 192, 417, 1165, 1345, 1399, 1520, 1677
BsnI GGCC 6 cut(s) 88, 168, 847, 866, 1144, 1163
Bsp1286I GDGCHC 1 cut(s) 1124
Bsp143I GATC 5 cut(s) 354, 412, 568, 613, 1507
Bsp19I CCATGG 1 cut(s) 287
BspACI CCGC 3 cut(s) 867, 1164, 1268
BspANI GGCC 6 cut(s) 88, 168, 847, 866, 1144, 1163
BspCNI CTCAG 2 cut(s) 672, 1041
BspFNI CGCG 2 cut(s) 1156, 1361
BspLI GGNNCC 8 cut(s) 180, 337, 382, 433, 536, 570, 1485, 1665
BspMAI CTGCAG 1 cut(s) 140
BspMI ACCTGC 1 cut(s) 1333
BspOI GCTAGC 1 cut(s) 765
BspPI GGATC 4 cut(s) 420, 563, 576, 1502
BspT107I GGYRCC 1 cut(s) 380
BsrDI GCAATG 3 cut(s) 73, 1527, 1597
BsrFI RCCGGY 1 cut(s) 181
BsrI ACTGG 4 cut(s) 169, 263, 1117, 1353
BssAI RCCGGY 1 cut(s) 181
BssECI CCNNGG 2 cut(s) 287, 427
BssMI GATC 5 cut(s) 354, 412, 568, 613, 1507
BssT1I CCWWGG 1 cut(s) 287
Bst2UI CCWGG 3 cut(s) 609, 807, 1581
Bst6I CTCTTC 2 cut(s) 558, 1521
BstBAI YACGTR 1 cut(s) 880
BstC8I GCNNGC 5 cut(s) 23, 90, 396, 479, 763
BstDEI CTNAG 2 cut(s) 680, 1028
BstDSI CCRYGG 2 cut(s) 287, 427
BstF5I GGATG 3 cut(s) 1051, 1411, 1411
BstFNI CGCG 2 cut(s) 1156, 1361
BstH2I RGCGCY 1 cut(s) 891
BstHHI GCGC 2 cut(s) 274, 890
BstKTI GATC 5 cut(s) 357, 415, 571, 616, 1510
BstMAI GTCTC 4 cut(s) 632, 676, 1031, 1105
BstMBI GATC 5 cut(s) 354, 412, 568, 613, 1507
BstMWI GCNNNNNNNGC 2 cut(s) 89, 872
BstNI CCWGG 3 cut(s) 609, 807, 1581
BstNSI RCATGY 1 cut(s) 398
BstSCI CCNGG 5 cut(s) 175, 331, 607, 805, 1579
BstSFI CTRYAG 2 cut(s) 136, 870
BstSLI GKGCMC 1 cut(s) 1124
BstSNI TACGTA 1 cut(s) 880
BstUI CGCG 2 cut(s) 1156, 1361
BstV1I GCAGC 1 cut(s) 150
BstX2I RGATCY 1 cut(s) 568
BstYI RGATCY 1 cut(s) 568
BsuI GTATCC 2 cut(s) 630, 1627
BsuRI GGCC 6 cut(s) 88, 168, 847, 866, 1144, 1163
BtgI CCRYGG 2 cut(s) 287, 427
BtgZI GCGATG 1 cut(s) 709
BtsCI GGATG 3 cut(s) 1051, 1411, 1411
BtsIMutI CAGTG 6 cut(s) 256, 409, 420, 1124, 1304, 1371
BveI ACCTGC 1 cut(s) 1333
Cac8I GCNNGC 5 cut(s) 23, 90, 396, 479, 763
CaiI CAGNNNCTG 2 cut(s) 1348, 1538
CfoI GCGC 2 cut(s) 274, 890
Cfr10I RCCGGY 1 cut(s) 181
Cfr13I GGNCC 6 cut(s) 179, 299, 431, 1142, 1483, 1664
CseI GACGC 3 cut(s) 593, 1145, 1162
CsiI ACCWGGT 1 cut(s) 805
Csp6I GTAC 4 cut(s) 1297, 1309, 1346, 1354
CviQI GTAC 4 cut(s) 1297, 1309, 1346, 1354
DdeI CTNAG 2 cut(s) 680, 1028
DpnI GATC 5 cut(s) 356, 414, 570, 615, 1509
DpnII GATC 5 cut(s) 354, 412, 568, 613, 1507
EaeI YGGCCR 4 cut(s) 86, 166, 864, 1161
Eam1104I CTCTTC 2 cut(s) 558, 1521
EarI CTCTTC 2 cut(s) 558, 1521
Eco105I TACGTA 1 cut(s) 880
Eco130I CCWWGG 1 cut(s) 287
Eco147I AGGCCT 1 cut(s) 847
Eco47I GGWCC 5 cut(s) 179, 299, 431, 1483, 1664
Eco57I CTGAAG 1 cut(s) 1298
EcoO109I RGGNCCY 2 cut(s) 1483, 1664
EcoRII CCWGG 3 cut(s) 607, 805, 1579
EcoT14I CCWWGG 1 cut(s) 287
EcoT22I ATGCAT 3 cut(s) 1006, 1422, 1599
ErhI CCWWGG 1 cut(s) 287
Esp3I CGTCTC 2 cut(s) 632, 1105
FalI AAGNNNNNCTT 4 cut(s) 137, 169, 369, 401
FaqI GGGAC 7 cut(s) 192, 417, 1165, 1345, 1399, 1520, 1677
FauI CCCGC 1 cut(s) 1275
FauNDI CATATG 1 cut(s) 1617
Fnu4HI GCNGC 3 cut(s) 139, 867, 1164
FokI GGATG 3 cut(s) 1038, 1398, 1418
Fsp4HI GCNGC 3 cut(s) 139, 867, 1164
FspBI CTAG 3 cut(s) 762, 1167, 1197
FspI TGCGCA 1 cut(s) 273
GlaI GCGC 2 cut(s) 273, 889
GluI GCNGC 3 cut(s) 139, 867, 1164
GsaI CCCAGC 1 cut(s) 1143
GsuI CTGGAG 2 cut(s) 1370, 1602
HaeII RGCGCY 1 cut(s) 891
HaeIII GGCC 6 cut(s) 88, 168, 847, 866, 1144, 1163
HapII CCGG 5 cut(s) 176, 182, 332, 561, 696
HgaI GACGC 3 cut(s) 593, 1145, 1162
HhaI GCGC 2 cut(s) 274, 890
Hin6I GCGC 2 cut(s) 272, 888
HinP1I GCGC 2 cut(s) 272, 888
HincII GTYRAC 3 cut(s) 605, 1108, 1234
HindII GTYRAC 3 cut(s) 605, 1108, 1234
HindIII AAGCTT 2 cut(s) 81, 1215
HinfI GANTC 4 cut(s) 132, 709, 937, 1563
HpaII CCGG 5 cut(s) 176, 182, 332, 561, 696
HphI GGTGA 4 cut(s) 337, 661, 787, 795
Hpy166II GTNNAC 8 cut(s) 345, 427, 605, 1108, 1174, 1192, 1234, 1551
Hpy188I TCNGA 6 cut(s) 295, 583, 637, 843, 1317, 1562
Hpy188III TCNNGA 5 cut(s) 12, 154, 1030, 1259, 1607
Hpy8I GTNNAC 8 cut(s) 345, 427, 605, 1108, 1174, 1192, 1234, 1551
Hpy99I CGWCG 2 cut(s) 221, 587
HpyAV CCTTC 4 cut(s) 371, 514, 963, 1322
HpyCH4IV ACGT 4 cut(s) 641, 879, 1062, 1112
HpyF10VI GCNNNNNNNGC 2 cut(s) 89, 872
HpyF3I CTNAG 2 cut(s) 680, 1028
HpySE526I ACGT 4 cut(s) 641, 879, 1062, 1112
HspAI GCGC 2 cut(s) 272, 888
Kzo9I GATC 5 cut(s) 354, 412, 568, 613, 1507
LmnI GCTCC 5 cut(s) 335, 370, 834, 1032, 1369
Lsp1109I GCAGC 1 cut(s) 150
LweI GCATC 4 cut(s) 34, 748, 1013, 1429
MabI ACCWGGT 1 cut(s) 805
MaeI CTAG 3 cut(s) 762, 1167, 1197
MaeII ACGT 4 cut(s) 641, 879, 1062, 1112
MaeIII GTNAC 6 cut(s) 95, 242, 739, 793, 944, 1430
MalI GATC 5 cut(s) 356, 414, 570, 615, 1509
MboI GATC 5 cut(s) 354, 412, 568, 613, 1507
MboII GAAGA 7 cut(s) 469, 472, 545, 948, 971, 1415, 1508
MflI RGATCY 1 cut(s) 568
MhlI GDGCHC 1 cut(s) 1124
MlsI TGGCCA 2 cut(s) 88, 168
MluCI AATT 7 cut(s) 15, 324, 463, 492, 1074, 1129, 1390
MluI ACGCGT 1 cut(s) 1154
MluNI TGGCCA 2 cut(s) 88, 168
MlyI GAGTC 1 cut(s) 126
MmeI TCCRAC 3 cut(s) 273, 606, 1429
Mox20I TGGCCA 2 cut(s) 88, 168
Mph1103I ATGCAT 3 cut(s) 1006, 1422, 1599
MscI TGGCCA 2 cut(s) 88, 168
MseI TTAA 3 cut(s) 57, 228, 1281
MslI CAYNNNNRTG 4 cut(s) 104, 261, 1017, 1425
Msp20I TGGCCA 2 cut(s) 88, 168
MspI CCGG 5 cut(s) 176, 182, 332, 561, 696
MspR9I CCNGG 5 cut(s) 177, 333, 609, 807, 1581
MvaI CCWGG 3 cut(s) 609, 807, 1581
MvnI CGCG 2 cut(s) 1156, 1361
MwoI GCNNNNNNNGC 2 cut(s) 89, 872
NciI CCSGG 2 cut(s) 177, 333
NcoI CCATGG 1 cut(s) 287
NdeI CATATG 1 cut(s) 1617
NdeII GATC 5 cut(s) 354, 412, 568, 613, 1507
NheI GCTAGC 1 cut(s) 761
NlaIV GGNNCC 8 cut(s) 180, 337, 382, 433, 536, 570, 1485, 1665
NmuCI GTSAC 2 cut(s) 739, 793
NsbI TGCGCA 1 cut(s) 273
NsiI ATGCAT 3 cut(s) 1006, 1422, 1599
NspI RCATGY 1 cut(s) 398
OliI CACNNNNGTG 1 cut(s) 104
PaeI GCATGC 1 cut(s) 398
PceI AGGCCT 1 cut(s) 847
PfeI GAWTC 3 cut(s) 709, 937, 1563
PflMI CCANNNNNTGG 1 cut(s) 258
PfoI TCCNGGA 2 cut(s) 175, 1579
PkrI GCNGC 3 cut(s) 140, 868, 1165
PleI GAGTC 1 cut(s) 126
PpsI GAGTC 1 cut(s) 126
Ppu21I YACGTR 1 cut(s) 880
PpuMI RGGWCCY 2 cut(s) 1483, 1664
Psp5II RGGWCCY 2 cut(s) 1483, 1664
Psp6I CCWGG 3 cut(s) 607, 805, 1579
PspFI CCCAGC 1 cut(s) 1139
PspGI CCWGG 3 cut(s) 607, 805, 1579
PspN4I GGNNCC 8 cut(s) 180, 337, 382, 433, 536, 570, 1485, 1665
PspPI GGNCC 6 cut(s) 179, 299, 431, 1142, 1483, 1664
PspPPI RGGWCCY 2 cut(s) 1483, 1664
PstI CTGCAG 1 cut(s) 140
PstNI CAGNNNCTG 2 cut(s) 1348, 1538
PsuI RGATCY 1 cut(s) 568
RsaI GTAC 4 cut(s) 1298, 1310, 1347, 1355
RsaNI GTAC 4 cut(s) 1297, 1309, 1346, 1354
RseI CAYNNNNRTG 4 cut(s) 104, 261, 1017, 1425
SaqAI TTAA 3 cut(s) 57, 228, 1281
SatI GCNGC 3 cut(s) 139, 867, 1164
Sau3AI GATC 5 cut(s) 354, 412, 568, 613, 1507
Sau96I GGNCC 6 cut(s) 179, 299, 431, 1142, 1483, 1664
ScaI AGTACT 1 cut(s) 1298
SchI GAGTC 1 cut(s) 126
ScrFI CCNGG 5 cut(s) 177, 333, 609, 807, 1581
SduI GDGCHC 1 cut(s) 1124
SexAI ACCWGGT 1 cut(s) 805
SfaNI GCATC 4 cut(s) 34, 748, 1013, 1429
SfcI CTRYAG 2 cut(s) 136, 870
SinI GGWCC 5 cut(s) 179, 299, 431, 1483, 1664
SmiMI CAYNNNNRTG 4 cut(s) 104, 261, 1017, 1425
SnaBI TACGTA 1 cut(s) 880
SphI GCATGC 1 cut(s) 398
Sse9I AATT 7 cut(s) 15, 324, 463, 492, 1074, 1129, 1390
SseBI AGGCCT 1 cut(s) 847
SsiI CCGC 3 cut(s) 867, 1164, 1268
SspMI CTAG 3 cut(s) 762, 1167, 1197
StuI AGGCCT 1 cut(s) 847
StyD4I CCNGG 5 cut(s) 175, 331, 607, 805, 1579
StyI CCWWGG 1 cut(s) 287
TaiI ACGT 4 cut(s) 644, 882, 1065, 1115
TaqI TCGA 2 cut(s) 219, 415
TasI AATT 7 cut(s) 15, 324, 463, 492, 1074, 1129, 1390
TatI WGTACW 2 cut(s) 1296, 1353
TauI GCSGC 2 cut(s) 869, 1166
TfiI GAWTC 3 cut(s) 709, 937, 1563
Tru1I TTAA 3 cut(s) 57, 228, 1281
Tru9I TTAA 3 cut(s) 57, 228, 1281
TscAI CASTG 6 cut(s) 263, 409, 427, 1124, 1311, 1371
TseFI GTSAC 2 cut(s) 739, 793
TseI GCWGC 1 cut(s) 138
Tsp45I GTSAC 2 cut(s) 739, 793
TspDTI ATGAA 5 cut(s) 17, 185, 1001, 1122, 1415
TspGWI ACGGA 3 cut(s) 312, 800, 1093
TspRI CASTG 6 cut(s) 263, 409, 427, 1124, 1311, 1371
Van91I CCANNNNNTGG 1 cut(s) 258
VpaK11BI GGWCC 5 cut(s) 179, 299, 431, 1483, 1664
XapI RAATTY 1 cut(s) 492
XceI RCATGY 1 cut(s) 398
XcmI CCANNNNNNNNNTGG 1 cut(s) 285
XspI CTAG 3 cut(s) 762, 1167, 1197
ZrmI AGTACT 1 cut(s) 1298
Zsp2I ATGCAT 3 cut(s) 1006, 1422, 1599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.