FvH4_1g24380

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000359
Physical Location & Seq
Reverse (-)
16242663 .. 16247257
4595 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g24380.t1

Sequence Viewer

Length: 1725 bp
ATGAAGGAGGTTTCCAGAATTAGCATTCATCTGCAACTTTTGGGGTTGTTATTTGCTGTTAATGGCTTCCTCCTCCATTGCCAAGCTTGGCCAGCTCGTTACACTTTTGTGGTGGAAGACACTCCATACACAAGACTCTGCAGCACAAAGAACATCCTGACTGTAAACGGCCAGTTTCCGGGACCGACGTTGTACGTTCACAAAGGACACACTATCAGCGTCGAAGTCATTAACAGAGGCAGTCGTAACATCACTCTCCACTGGCATGGCGTTGCGCAACCAAGGAATCCATGGTCGGACGGACCGGATTATATCACGCAGTGTCCTATTCAGCCAGGAGCCAAGTTCACCCAGAAGATCATCTTCTCGACAGAGGAAGGCACCCTTTGGTGGCATGCTCACAGCGAGTGGGATCGAGCCACTGTCCACGGTGCCATCATCATATATCCCTCGAAGAAGAGCAAGTACCCTTTCCCCAAGCCTCATGCAGAAATTCCGATCATATTGGGAGAGTGGTGGAAGGAAGATATAGGGAAGCTTTATACTCGAACTATTCAAACCGGAGGGGACCCTAATATCTCCGACGCTTACCTCATCAATGGCCAACCTGGTGATCTTTATCCATGCTCTAAATCAGACACGTTCAAGGTGACGGTTGACTATGGCAAAACCTACCTACTGAGACTAATCAACTCTGCTGTGCAAGAGATACTGTTTTTCGCCATCGCCAATCACAAAGTCACAGTTGTAGGCACAGATGCTAGCTACACCAAGCCTTTCACAACCGATTATGTCACAATCTCACCTGGCCAAACCATGGATCTTTTGCTCCATGCTAATCAGAGCCCTAACCACTACTACATGGCTGCTACAGCCTATGTTGGTGGCGCCGTTCCTTATGATAACACCACCACCAGAGCCCTTCTACAATACACGAATCGGGGAACGAAAGGAAACTATACCCCTTCTTCAATACCTTTGCTTCCTAATCTTCCTGCCCACAATGACACTAATGCATCAGTTCATTTCAGTGGTAGTCTAAGGAGCTTGGCTGATAAAAACCACCCCATTGATGTTCCACTGAAGATTACAAATCACTTGTTTTTTACAGTCTCCGTCAACACGTTTGCATGCCCCAATAATTCCTGCGCCGGGCCTAATGGGACGCGCCTGGCCGCTAGTGTGAACAACATTAGCTTTGTGAACCCTAGCATTGACATACTACAAGCTTACTATTACCATGTCAACGGGGCATTTGGAACTCGGTTTCCAAAAACCCCGCCTTTGCTGTTTAACTTCACAGCGCAGGACTTGCCGCTGTACCTTCAGACCCCAAAACGAGGGACAGAGGTGAAGGTACTGGAATACGACGCAACGGTGGAGCTTGTGTTTCAGGGGACTAATTTGGTTGCAGGGGATGATCATCCAATGCATCTTCATGGTTTCAGTTTCTATGTAGTTGGAATGGGGCTCGGGAACTTTGACAAGGATAAGGACCCTCTGACGTACAATCTTGTTGATCCTCCTCTTCGAAACACCATTGCTGTCCCTGTAAATGGGTGGACTACCATCAGATTTAAGGCTGACAATCCTGGAGTTTGGTTTATGCATTGTCATCTGGATAGGCATATGTCATGGGGCATGGATATGACATTCATAGTGAAAAATGGGAAGGACCCTAAAGCACACATCTTACCTCCACCACCAGATATGCCACCTTGCTAG

Protein Analysis

575

Amino Acids

64.04

Weight (kDa)

8.02

Isoelectric Point (pI)

34.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 38 - 152 3.3e-39 Multicopper oxidase
Cu-oxidase PF00394 165 - 313 7.2e-41 Multicopper oxidase
Cu-oxidase_2 PF07731 423 - 557 4.2e-43 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000359)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48100
fragaria_vesca FvH4_1g24380 FvH4_2g05800 FvH4_5g30730
malus_domestica MD01G1234900.v1.1 MD01G1235100.v1.1 MD01G1235200.v1.1 MD07G1307400.v1.1 MD07G1308000.v1.1 MD10G1042300.v1.1 MD10G1042400.v1.1 MD10G1042500.v1.1 MD10G1042700.v1.1
prunus_persica Prupe.2G325200_v2.0.a1 Prupe.6G242000_v2.0.a1 Prupe.8G046800_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1
pyrus_communis pycom01g24320 pycom01g24330 pycom07g28020 pycom10g02950 pycom17g03690
rosa_chinensis RchiOBHm_Chr1g0384031 RchiOBHm_Chr2g0120941 RchiOBHm_Chr2g0120971 RchiOBHm_Chr2g0121051 RchiOBHm_Chr2g0121181 RchiOBHm_Chr2g0121211 RchiOBHm_Chr3g0473931 RchiOBHm_Chr3g0473941 RchiOBHm_Chr6g0257941 RchiOBHm_Chr6g0284781
rosa_laevigata RLG00000008541 RLG00000014737 RLG00000018604 RLG00000018607 RLG00000018608 RLG00000018610 RLG00000018611 RLG00000018613 RLG00000023967 RLG00000023970 RLG00000026078 RLG00000035183
rosa_multiflora Rmu_sc0000079.1_g000043 Rmu_sc0000079.1_g000062 Rmu_sc0000079.1_g000069 Rmu_sc0000621.1_g000019 Rmu_sc0000621.1_g000025 Rmu_sc0000621.1_g000041 Rmu_sc0000652.1_g000018 Rmu_sc0002414.1_g000030 Rmu_sc0002414.1_g000033 Rmu_sc0002843.1_g000016 Rmu_sc0005137.1_g000035 Rmu_sc0005139.1_g000021
rosa_roxburghii Rroxscaffold_2G00122530 Rroxscaffold_2G00122570 Rroxscaffold_2G00122580 Rroxscaffold_2G00122650 Rroxscaffold_4G00277080 Rroxscaffold_6G00407610 Rroxscaffold_6G00407620 Rroxscaffold_7G00209050
rosa_rugosa Rorug01G0444300 Rorug02G0232700 Rorug02G0232700 Rorug02G0232900 Rorug03G0137100 Rorug05G0565600 Rorug05G0566500
rosa_samantha Rh1BG427300 Rh1CG440100 Rh2CG278100 Rh2CG278200 Rh2CG278700 Rh2CG278800 Rh2CG279100 Rh2DG314200 Rh2DG314300 Rh2DG314600 Rh3AG187200 Rh3DG211700 Rh3DG211800 Rh5AG356600 Rh6BG078000 Rh6BG078700 Rh6CG073300 Rh6DG070300 Rh6DG190200 Rh6DG274700 Rh7BG365900
rosa_wichuraiana Rw0G018400 Rw1G040270 Rw2G023160 Rw2G023170 Rw2G023190 Rw2G023200 Rw2G023220 Rw2G023230 Rw3G017140 Rw3G017150 Rw4G012840 Rw6G007580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 276
AccB1I GGYRCC 3 cut(s) 380, 431, 887
AccB7I CCANNNNNTGG 1 cut(s) 817
AccII CGCG 1 cut(s) 1168
AciI CCGC 3 cut(s) 1176, 1280, 1316
AclWI GGATC 3 cut(s) 420, 828, 1514
AcoI YGGCCR 5 cut(s) 89, 169, 601, 808, 1173
AcsI RAATTY 1 cut(s) 492
AcuI CTGAAG 2 cut(s) 1103, 1310
AcyI GRCGYC 1 cut(s) 888
AdeI CACNNNGTG 1 cut(s) 321
AfaI GTAC 5 cut(s) 194, 467, 1322, 1359, 1508
AfiI CCNNNNNNNGG 6 cut(s) 178, 390, 817, 1152, 1340, 1556
AflIII ACRYGT 2 cut(s) 639, 1122
AgsI TTSAA 3 cut(s) 557, 646, 972
AjnI CCWGG 5 cut(s) 334, 607, 805, 1170, 1591
AleI CACNNNNGTG 1 cut(s) 107
AloI GAACNNNNNNTCC 2 cut(s) 1252, 1284
AluBI AGCT 8 cut(s) 86, 95, 538, 765, 1047, 1197, 1229, 1384
AluI AGCT 8 cut(s) 86, 95, 538, 765, 1047, 1197, 1229, 1384
Alw26I GTCTC 2 cut(s) 676, 1117
AlwI GGATC 3 cut(s) 420, 828, 1514
Ama87I CYCGRG 1 cut(s) 1472
AoxI GGCC 6 cut(s) 89, 169, 601, 808, 1154, 1173
ApeKI GCWGC 2 cut(s) 141, 866
ApoI RAATTY 1 cut(s) 492
AspLEI GCGC 5 cut(s) 277, 890, 1151, 1170, 1306
AspS9I GGNCC 6 cut(s) 182, 302, 568, 1154, 1495, 1675
AsuC2I CCSGG 2 cut(s) 180, 1153
AsuHPI GGTGA 5 cut(s) 340, 623, 661, 795, 1363
AsuII TTCGAA 1 cut(s) 1531
AsuNHI GCTAGC 1 cut(s) 761
AvaI CYCGRG 1 cut(s) 1472
AvaII GGWCC 5 cut(s) 182, 302, 568, 1495, 1675
BalI TGGCCA 3 cut(s) 91, 603, 810
BanI GGYRCC 3 cut(s) 380, 431, 887
BanII GRGCYC 3 cut(s) 848, 922, 1473
BarI GAAGNNNNNNTAC 2 cut(s) 449, 481
BbsI GAAGAC 1 cut(s) 123
BbvI GCAGC 2 cut(s) 153, 853
BccI CCATC 3 cut(s) 443, 731, 1577
BceAI ACGGC 2 cut(s) 184, 875
BciT130I CCWGG 5 cut(s) 336, 609, 807, 1172, 1593
BclI TGATCA 1 cut(s) 1420
BcnI CCSGG 2 cut(s) 180, 1153
BcoDI GTCTC 2 cut(s) 676, 1117
BfaI CTAG 4 cut(s) 762, 1179, 1209, 1723
BfmI CTRYAG 2 cut(s) 139, 870
BfoI RGCGCY 1 cut(s) 891
BisI GCNGC 4 cut(s) 142, 867, 1176, 1316
BlsI GCNGC 4 cut(s) 143, 868, 1177, 1317
Bme1390I CCNGG 7 cut(s) 180, 336, 609, 807, 1153, 1172, 1593
Bme18I GGWCC 5 cut(s) 182, 302, 568, 1495, 1675
BmeT110I CYCGRG 1 cut(s) 1472
BmgT120I GGNCC 6 cut(s) 182, 302, 568, 1154, 1495, 1675
BmiI GGNNCC 9 cut(s) 183, 340, 382, 433, 569, 570, 889, 1497, 1677
BmrFI CCNGG 7 cut(s) 180, 336, 609, 807, 1153, 1172, 1593
BmsI GCATC 3 cut(s) 748, 1025, 1441
BmtI GCTAGC 1 cut(s) 765
BpiI GAAGAC 1 cut(s) 123
BpmI CTGGAG 1 cut(s) 1614
Bpu14I TTCGAA 1 cut(s) 1531
BpuMI CCSGG 2 cut(s) 180, 1153
BsaBI GATNNNNATC 2 cut(s) 618, 1422
BsaHI GRCGYC 1 cut(s) 888
BsaJI CCNNGG 4 cut(s) 281, 290, 427, 816
BsaWI WCCGGW 2 cut(s) 304, 560
BsaXI ACNNNNNCTCC 2 cut(s) 1373, 1403
Bsc4I CCNNNNNNNGG 6 cut(s) 178, 390, 817, 1152, 1340, 1556
Bse1I ACTGG 3 cut(s) 172, 266, 1365
Bse3DI GCAATG 2 cut(s) 76, 1539
Bse8I GATNNNNATC 2 cut(s) 618, 1422
BseBI CCWGG 5 cut(s) 336, 609, 807, 1172, 1593
BseDI CCNNGG 4 cut(s) 281, 290, 427, 816
BseGI GGATG 3 cut(s) 153, 1423, 1423
BseJI GATNNNNATC 2 cut(s) 618, 1422
BseLI CCNNNNNNNGG 6 cut(s) 178, 390, 817, 1152, 1340, 1556
BseMI GCAATG 2 cut(s) 76, 1539
BseMII CTCAG 1 cut(s) 671
BseNI ACTGG 3 cut(s) 172, 266, 1365
BseRI GAGGAG 2 cut(s) 62, 1515
BseXI GCAGC 2 cut(s) 153, 853
Bsh1236I CGCG 1 cut(s) 1168
BshFI GGCC 6 cut(s) 91, 171, 603, 810, 1156, 1175
BshNI GGYRCC 3 cut(s) 380, 431, 887
BsiHKCI CYCGRG 1 cut(s) 1472
BsiSI CCGG 4 cut(s) 179, 305, 561, 1152
BslFI GGGAC 6 cut(s) 195, 581, 1177, 1357, 1411, 1532
BslI CCNNNNNNNGG 6 cut(s) 178, 390, 817, 1152, 1340, 1556
BsmAI GTCTC 2 cut(s) 676, 1117
BsmFI GGGAC 6 cut(s) 195, 581, 1177, 1357, 1411, 1532
BsmI GAATGC 1 cut(s) 24
BsnI GGCC 6 cut(s) 91, 171, 603, 810, 1156, 1175
BsoBI CYCGRG 1 cut(s) 1472
Bsp119I TTCGAA 1 cut(s) 1531
Bsp1286I GDGCHC 3 cut(s) 848, 922, 1473
Bsp143I GATC 7 cut(s) 357, 412, 498, 613, 820, 1420, 1519
Bsp19I CCATGG 2 cut(s) 290, 816
BspACI CCGC 3 cut(s) 1176, 1280, 1316
BspANI GGCC 6 cut(s) 91, 171, 603, 810, 1156, 1175
BspCNI CTCAG 1 cut(s) 672
BspFNI CGCG 1 cut(s) 1168
BspLI GGNNCC 9 cut(s) 183, 340, 382, 433, 569, 570, 889, 1497, 1677
BspMAI CTGCAG 1 cut(s) 143
BspOI GCTAGC 1 cut(s) 765
BspPI GGATC 3 cut(s) 420, 828, 1514
BspQI GCTCTTC 1 cut(s) 452
BspT104I TTCGAA 1 cut(s) 1531
BspT107I GGYRCC 3 cut(s) 380, 431, 887
BsrDI GCAATG 2 cut(s) 76, 1539
BsrI ACTGG 3 cut(s) 172, 266, 1365
BssECI CCNNGG 4 cut(s) 281, 290, 427, 816
BssMI GATC 7 cut(s) 357, 412, 498, 613, 820, 1420, 1519
BssNI GRCGYC 1 cut(s) 888
BssT1I CCWWGG 3 cut(s) 281, 290, 816
Bst2UI CCWGG 5 cut(s) 336, 609, 807, 1172, 1593
Bst4CI ACNGT 8 cut(s) 163, 424, 431, 655, 714, 745, 1111, 1378
Bst6I CTCTTC 2 cut(s) 452, 1533
BstACI GRCGYC 1 cut(s) 888
BstAPI GCANNNNNTGC 1 cut(s) 1312
BstBI TTCGAA 1 cut(s) 1531
BstC8I GCNNGC 4 cut(s) 93, 396, 763, 1132
BstDEI CTNAG 2 cut(s) 680, 1040
BstDSI CCRYGG 3 cut(s) 290, 427, 816
BstF5I GGATG 3 cut(s) 153, 1423, 1423
BstFNI CGCG 1 cut(s) 1168
BstH2I RGCGCY 1 cut(s) 891
BstHHI GCGC 5 cut(s) 277, 890, 1151, 1170, 1306
BstKTI GATC 7 cut(s) 360, 415, 501, 616, 823, 1423, 1522
BstMAI GTCTC 2 cut(s) 676, 1117
BstMBI GATC 7 cut(s) 357, 412, 498, 613, 820, 1420, 1519
BstMWI GCNNNNNNNGC 3 cut(s) 92, 872, 1312
BstNI CCWGG 5 cut(s) 336, 609, 807, 1172, 1593
BstNSI RCATGY 2 cut(s) 398, 1134
BstSCI CCNGG 7 cut(s) 178, 334, 607, 805, 1151, 1170, 1591
BstSFI CTRYAG 2 cut(s) 139, 870
BstUI CGCG 1 cut(s) 1168
BstV1I GCAGC 2 cut(s) 153, 853
BstV2I GAAGAC 1 cut(s) 123
BstX2I RGATCY 1 cut(s) 820
BstXI CCANNNNNNTGG 1 cut(s) 266
BstYI RGATCY 1 cut(s) 820
BsuRI GGCC 6 cut(s) 91, 171, 603, 810, 1156, 1175
BtgI CCRYGG 3 cut(s) 290, 427, 816
BtgZI GCGATG 1 cut(s) 709
BtsCI GGATG 3 cut(s) 153, 1423, 1423
BtsI GCAGTG 1 cut(s) 326
BtsIMutI CAGTG 5 cut(s) 259, 326, 420, 1036, 1079
Cac8I GCNNGC 4 cut(s) 93, 396, 763, 1132
CfoI GCGC 5 cut(s) 277, 890, 1151, 1170, 1306
Cfr13I GGNCC 6 cut(s) 182, 302, 568, 1154, 1495, 1675
CpoI CGGWCCG 1 cut(s) 302
CseI GACGC 4 cut(s) 208, 593, 1174, 1379
CsiI ACCWGGT 1 cut(s) 607
Csp6I GTAC 5 cut(s) 193, 466, 1321, 1358, 1507
CspI CGGWCCG 1 cut(s) 302
CviQI GTAC 5 cut(s) 193, 466, 1321, 1358, 1507
DdeI CTNAG 2 cut(s) 680, 1040
DinI GGCGCC 1 cut(s) 889
DpnI GATC 7 cut(s) 359, 414, 500, 615, 822, 1422, 1521
DpnII GATC 7 cut(s) 357, 412, 498, 613, 820, 1420, 1519
DraIII CACNNNGTG 1 cut(s) 321
EaeI YGGCCR 5 cut(s) 89, 169, 601, 808, 1173
Eam1104I CTCTTC 2 cut(s) 452, 1533
EarI CTCTTC 2 cut(s) 452, 1533
Eco130I CCWWGG 3 cut(s) 281, 290, 816
Eco24I GRGCYC 3 cut(s) 848, 922, 1473
Eco47I GGWCC 5 cut(s) 182, 302, 568, 1495, 1675
Eco57I CTGAAG 2 cut(s) 1103, 1310
Eco88I CYCGRG 1 cut(s) 1472
EcoO109I RGGNCCY 3 cut(s) 568, 1495, 1675
EcoRII CCWGG 5 cut(s) 334, 607, 805, 1170, 1591
EcoT14I CCWWGG 3 cut(s) 281, 290, 816
EcoT22I ATGCAT 3 cut(s) 1018, 1434, 1611
EcoT38I GRGCYC 3 cut(s) 848, 922, 1473
EgeI GGCGCC 1 cut(s) 889
EheI GGCGCC 1 cut(s) 889
ErhI CCWWGG 3 cut(s) 281, 290, 816
FalI AAGNNNNNCTT 4 cut(s) 347, 379, 369, 401
FaqI GGGAC 6 cut(s) 195, 581, 1177, 1357, 1411, 1532
FauI CCCGC 1 cut(s) 1287
FauNDI CATATG 1 cut(s) 1629
FbaI TGATCA 1 cut(s) 1420
Fnu4HI GCNGC 4 cut(s) 142, 867, 1176, 1316
FokI GGATG 3 cut(s) 140, 1410, 1430
FriOI GRGCYC 3 cut(s) 848, 922, 1473
Fsp4HI GCNGC 4 cut(s) 142, 867, 1176, 1316
FspBI CTAG 4 cut(s) 762, 1179, 1209, 1723
FspI TGCGCA 1 cut(s) 276
GlaI GCGC 5 cut(s) 276, 889, 1150, 1169, 1305
GluI GCNGC 4 cut(s) 142, 867, 1176, 1316
GsuI CTGGAG 1 cut(s) 1614
HaeII RGCGCY 1 cut(s) 891
HaeIII GGCC 6 cut(s) 91, 171, 603, 810, 1156, 1175
HapII CCGG 4 cut(s) 179, 305, 561, 1152
HgaI GACGC 4 cut(s) 208, 593, 1174, 1379
HhaI GCGC 5 cut(s) 277, 890, 1151, 1170, 1306
Hin1I GRCGYC 1 cut(s) 888
Hin6I GCGC 5 cut(s) 275, 888, 1149, 1168, 1304
HinP1I GCGC 5 cut(s) 275, 888, 1149, 1168, 1304
HincII GTYRAC 3 cut(s) 658, 1120, 1246
HindII GTYRAC 3 cut(s) 658, 1120, 1246
HindIII AAGCTT 3 cut(s) 84, 536, 1227
HinfI GANTC 3 cut(s) 135, 286, 937
HpaII CCGG 4 cut(s) 179, 305, 561, 1152
HphI GGTGA 5 cut(s) 340, 623, 661, 795, 1363
Hpy188I TCNGA 8 cut(s) 298, 498, 583, 637, 843, 1329, 1503, 1574
Hpy188III TCNNGA 5 cut(s) 15, 157, 367, 1474, 1619
Hpy99I CGWCG 4 cut(s) 190, 224, 587, 1373
HpyAV CCTTC 7 cut(s) 371, 514, 932, 975, 1334, 1348, 1666
HpyCH4III ACNGT 8 cut(s) 163, 424, 431, 655, 714, 745, 1111, 1378
HpyCH4IV ACGT 5 cut(s) 188, 195, 641, 1124, 1505
HpyCH4V TGCA 9 cut(s) 34, 141, 488, 703, 1016, 1130, 1412, 1432, 1609
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 872, 1312
HpyF3I CTNAG 2 cut(s) 680, 1040
HpySE526I ACGT 5 cut(s) 188, 195, 641, 1124, 1505
Hsp92I GRCGYC 1 cut(s) 888
HspAI GCGC 5 cut(s) 275, 888, 1149, 1168, 1304
KasI GGCGCC 1 cut(s) 887
KflI GGGWCCC 1 cut(s) 568
Ksp22I TGATCA 1 cut(s) 1420
Kzo9I GATC 7 cut(s) 357, 412, 498, 613, 820, 1420, 1519
LguI GCTCTTC 1 cut(s) 452
LmnI GCTCC 4 cut(s) 338, 834, 1044, 1381
Lsp1109I GCAGC 2 cut(s) 153, 853
LweI GCATC 3 cut(s) 748, 1025, 1441
MabI ACCWGGT 1 cut(s) 607
MaeI CTAG 4 cut(s) 762, 1179, 1209, 1723
MaeII ACGT 5 cut(s) 188, 195, 641, 1124, 1505
MaeIII GTNAC 5 cut(s) 98, 245, 649, 739, 793
MalI GATC 7 cut(s) 359, 414, 500, 615, 822, 1422, 1521
MboI GATC 7 cut(s) 357, 412, 498, 613, 820, 1420, 1519
MflI RGATCY 1 cut(s) 820
MhlI GDGCHC 3 cut(s) 848, 922, 1473
MlsI TGGCCA 3 cut(s) 91, 603, 810
MluCI AATT 4 cut(s) 18, 492, 1141, 1402
MluNI TGGCCA 3 cut(s) 91, 603, 810
Mly113I GGCGCC 1 cut(s) 888
MlyI GAGTC 1 cut(s) 129
MmeI TCCRAC 3 cut(s) 276, 606, 1441
Mox20I TGGCCA 3 cut(s) 91, 603, 810
Mph1103I ATGCAT 3 cut(s) 1018, 1434, 1611
MscI TGGCCA 3 cut(s) 91, 603, 810
MseI TTAA 4 cut(s) 60, 231, 1293, 1578
MslI CAYNNNNRTG 5 cut(s) 107, 264, 1029, 1437, 1646
Msp20I TGGCCA 3 cut(s) 91, 603, 810
MspA1I CMGCKG 1 cut(s) 1318
MspI CCGG 4 cut(s) 179, 305, 561, 1152
MspR9I CCNGG 7 cut(s) 180, 336, 609, 807, 1153, 1172, 1593
Mva1269I GAATGC 1 cut(s) 24
MvaI CCWGG 5 cut(s) 336, 609, 807, 1172, 1593
MvnI CGCG 1 cut(s) 1168
MwoI GCNNNNNNNGC 3 cut(s) 92, 872, 1312
NarI GGCGCC 1 cut(s) 888
NciI CCSGG 2 cut(s) 180, 1153
NcoI CCATGG 2 cut(s) 290, 816
NdeI CATATG 1 cut(s) 1629
NdeII GATC 7 cut(s) 357, 412, 498, 613, 820, 1420, 1519
NheI GCTAGC 1 cut(s) 761
NlaIV GGNNCC 9 cut(s) 183, 340, 382, 433, 569, 570, 889, 1497, 1677
NmuCI GTSAC 3 cut(s) 649, 739, 793
NsbI TGCGCA 1 cut(s) 276
NsiI ATGCAT 3 cut(s) 1018, 1434, 1611
NspI RCATGY 2 cut(s) 398, 1134
NspV TTCGAA 1 cut(s) 1531
OliI CACNNNNGTG 1 cut(s) 107
PaeI GCATGC 2 cut(s) 398, 1134
PciSI GCTCTTC 1 cut(s) 452
PctI GAATGC 1 cut(s) 24
PfeI GAWTC 2 cut(s) 286, 937
PflMI CCANNNNNTGG 1 cut(s) 817
PfoI TCCNGGA 2 cut(s) 178, 1591
PkrI GCNGC 4 cut(s) 143, 868, 1177, 1317
PleI GAGTC 1 cut(s) 129
PluTI GGCGCC 1 cut(s) 891
PpsI GAGTC 1 cut(s) 129
PpuMI RGGWCCY 3 cut(s) 568, 1495, 1675
Psp5II RGGWCCY 3 cut(s) 568, 1495, 1675
Psp6I CCWGG 5 cut(s) 334, 607, 805, 1170, 1591
PspGI CCWGG 5 cut(s) 334, 607, 805, 1170, 1591
PspN4I GGNNCC 9 cut(s) 183, 340, 382, 433, 569, 570, 889, 1497, 1677
PspPI GGNCC 6 cut(s) 182, 302, 568, 1154, 1495, 1675
PspPPI RGGWCCY 3 cut(s) 568, 1495, 1675
PstI CTGCAG 1 cut(s) 143
PsuI RGATCY 1 cut(s) 820
RsaI GTAC 5 cut(s) 194, 467, 1322, 1359, 1508
RsaNI GTAC 5 cut(s) 193, 466, 1321, 1358, 1507
RseI CAYNNNNRTG 5 cut(s) 107, 264, 1029, 1437, 1646
Rsr2I CGGWCCG 1 cut(s) 302
RsrII CGGWCCG 1 cut(s) 302
SapI GCTCTTC 1 cut(s) 452
SaqAI TTAA 4 cut(s) 60, 231, 1293, 1578
SatI GCNGC 4 cut(s) 142, 867, 1176, 1316
Sau3AI GATC 7 cut(s) 357, 412, 498, 613, 820, 1420, 1519
Sau96I GGNCC 6 cut(s) 182, 302, 568, 1154, 1495, 1675
SchI GAGTC 1 cut(s) 129
ScrFI CCNGG 7 cut(s) 180, 336, 609, 807, 1153, 1172, 1593
SduI GDGCHC 3 cut(s) 848, 922, 1473
SexAI ACCWGGT 1 cut(s) 607
SfaNI GCATC 3 cut(s) 748, 1025, 1441
SfcI CTRYAG 2 cut(s) 139, 870
SfoI GGCGCC 1 cut(s) 889
SfuI TTCGAA 1 cut(s) 1531
SinI GGWCC 5 cut(s) 182, 302, 568, 1495, 1675
SmiMI CAYNNNNRTG 5 cut(s) 107, 264, 1029, 1437, 1646
SphI GCATGC 2 cut(s) 398, 1134
Sse9I AATT 4 cut(s) 18, 492, 1141, 1402
SsiI CCGC 3 cut(s) 1176, 1280, 1316
SspDI GGCGCC 1 cut(s) 887
SspMI CTAG 4 cut(s) 762, 1179, 1209, 1723
StyD4I CCNGG 7 cut(s) 178, 334, 607, 805, 1151, 1170, 1591
StyI CCWWGG 3 cut(s) 281, 290, 816
TaaI ACNGT 8 cut(s) 163, 424, 431, 655, 714, 745, 1111, 1378
TaiI ACGT 5 cut(s) 191, 198, 644, 1127, 1508
TaqI TCGA 6 cut(s) 222, 368, 415, 452, 547, 1531
TaqII GACCGA 1 cut(s) 199
TasI AATT 4 cut(s) 18, 492, 1141, 1402
TauI GCSGC 2 cut(s) 1178, 1318
TfiI GAWTC 2 cut(s) 286, 937
Tru1I TTAA 4 cut(s) 60, 231, 1293, 1578
Tru9I TTAA 4 cut(s) 60, 231, 1293, 1578
TscAI CASTG 5 cut(s) 266, 326, 427, 1036, 1086
TseFI GTSAC 3 cut(s) 649, 739, 793
TseI GCWGC 2 cut(s) 141, 866
Tsp45I GTSAC 3 cut(s) 649, 739, 793
TspDTI ATGAA 5 cut(s) 17, 17, 1013, 1427, 1645
TspGWI ACGGA 2 cut(s) 315, 1105
TspRI CASTG 5 cut(s) 266, 326, 427, 1036, 1086
Van91I CCANNNNNTGG 1 cut(s) 817
VpaK11BI GGWCC 5 cut(s) 182, 302, 568, 1495, 1675
XapI RAATTY 1 cut(s) 492
XceI RCATGY 2 cut(s) 398, 1134
XcmI CCANNNNNNNNNTGG 1 cut(s) 288
XspI CTAG 4 cut(s) 762, 1179, 1209, 1723
Zsp2I ATGCAT 3 cut(s) 1018, 1434, 1611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.