pycom10g02950

Belongs to the multicopper oxidase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
3291901 .. 3293099
1199 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g02950.2

Sequence Viewer

Length: 567 bp
ATGGGCAACTGTAACAACATGGGTTTCCTGGTCTTAGCTCTTGTAGGGTTTATTTTCCTGGGCAAGGCTAATGGCGCTATCCATTATTATGATTTCGTTCTGCAAGAAACAAACTTTACAAGGCTTTGTAGCACAAAGAGTATCTTAACTGTGAATGGAACTCTTCCGGGACCAACCATCACTGTTCACAGAGGAGACACCGCTTTTATCAACGTTCACAACCAAGGATATTACGGTGTCACCCTTCACTGGCATGGAGTGAAGCAACCAAGAAATCCATGGTCAGATGGACCTGAGAATATCACTCAATGTCCTATTCAACCAGGAACAAACTTCACGTACGAAGTTATATTCTCCAGTGAAGAAGGAACATTATGGTGGCATGCTCATAGTGACTGGACGCGCGCCACCGTCCATGGTGCAATCATTATTCTACCAGCTGCCGGCACCACTTATCCATTTGCAACACCAGATGCACAAGAAATCGTTATTCTAGGTACTTTCATTAGTTTTATCCCTATTAATTCTTTAACTATTCAGTTATACTTGTGTTGTTCAGGCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

189

Amino Acids

20.71

Weight (kDa)

6.01

Isoelectric Point (pI)

26.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000359)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48100
fragaria_vesca FvH4_1g24380 FvH4_2g05800 FvH4_5g30730
malus_domestica MD01G1234900.v1.1 MD01G1235100.v1.1 MD01G1235200.v1.1 MD07G1307400.v1.1 MD07G1308000.v1.1 MD10G1042300.v1.1 MD10G1042400.v1.1 MD10G1042500.v1.1 MD10G1042700.v1.1
prunus_persica Prupe.2G325200_v2.0.a1 Prupe.6G242000_v2.0.a1 Prupe.8G046800_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1
pyrus_communis pycom01g24320 pycom01g24330 pycom07g28020 pycom10g02950 pycom17g03690
rosa_chinensis RchiOBHm_Chr1g0384031 RchiOBHm_Chr2g0120941 RchiOBHm_Chr2g0120971 RchiOBHm_Chr2g0121051 RchiOBHm_Chr2g0121181 RchiOBHm_Chr2g0121211 RchiOBHm_Chr3g0473931 RchiOBHm_Chr3g0473941 RchiOBHm_Chr6g0257941 RchiOBHm_Chr6g0284781
rosa_laevigata RLG00000008541 RLG00000014737 RLG00000018604 RLG00000018607 RLG00000018608 RLG00000018610 RLG00000018611 RLG00000018613 RLG00000023967 RLG00000023970 RLG00000026078 RLG00000035183
rosa_multiflora Rmu_sc0000079.1_g000043 Rmu_sc0000079.1_g000062 Rmu_sc0000079.1_g000069 Rmu_sc0000621.1_g000019 Rmu_sc0000621.1_g000025 Rmu_sc0000621.1_g000041 Rmu_sc0000652.1_g000018 Rmu_sc0002414.1_g000030 Rmu_sc0002414.1_g000033 Rmu_sc0002843.1_g000016 Rmu_sc0005137.1_g000035 Rmu_sc0005139.1_g000021
rosa_roxburghii Rroxscaffold_2G00122530 Rroxscaffold_2G00122570 Rroxscaffold_2G00122580 Rroxscaffold_2G00122650 Rroxscaffold_4G00277080 Rroxscaffold_6G00407610 Rroxscaffold_6G00407620 Rroxscaffold_7G00209050
rosa_rugosa Rorug01G0444300 Rorug02G0232700 Rorug02G0232700 Rorug02G0232900 Rorug03G0137100 Rorug05G0565600 Rorug05G0566500
rosa_samantha Rh1BG427300 Rh1CG440100 Rh2CG278100 Rh2CG278200 Rh2CG278700 Rh2CG278800 Rh2CG279100 Rh2DG314200 Rh2DG314300 Rh2DG314600 Rh3AG187200 Rh3DG211700 Rh3DG211800 Rh5AG356600 Rh6BG078000 Rh6BG078700 Rh6CG073300 Rh6DG070300 Rh6DG190200 Rh6DG274700 Rh7BG365900
rosa_wichuraiana Rw0G018400 Rw1G040270 Rw2G023160 Rw2G023170 Rw2G023190 Rw2G023200 Rw2G023220 Rw2G023230 Rw3G017140 Rw3G017150 Rw4G012840 Rw6G007580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 446
AccII CGCG 2 cut(s) 403, 405
AciI CCGC 1 cut(s) 201
AclI AACGTT 1 cut(s) 213
AfaI GTAC 2 cut(s) 341, 499
AfiI CCNNNNNNNGG 3 cut(s) 64, 249, 443
AgsI TTSAA 1 cut(s) 320
AjnI CCWGG 3 cut(s) 27, 57, 322
AluBI AGCT 2 cut(s) 38, 440
AluI AGCT 2 cut(s) 38, 440
Alw26I GTCTC 1 cut(s) 189
ApeKI GCWGC 1 cut(s) 440
AseI ATTAAT 1 cut(s) 522
AspLEI GCGC 3 cut(s) 77, 405, 407
AspS9I GGNCC 2 cut(s) 170, 290
AsuC2I CCSGG 1 cut(s) 168
AsuHPI GGTGA 1 cut(s) 232
AvaII GGWCC 2 cut(s) 170, 290
BanI GGYRCC 1 cut(s) 446
BbvI GCAGC 1 cut(s) 427
BccI CCATC 2 cut(s) 185, 281
BciT130I CCWGG 3 cut(s) 29, 59, 324
BcnI CCSGG 1 cut(s) 168
BcoDI GTCTC 1 cut(s) 189
BfaI CTAG 1 cut(s) 494
BfoI RGCGCY 1 cut(s) 78
BisI GCNGC 1 cut(s) 441
BlsI GCNGC 1 cut(s) 442
Bme1390I CCNGG 4 cut(s) 29, 59, 168, 324
Bme18I GGWCC 2 cut(s) 170, 290
BmgT120I GGNCC 2 cut(s) 170, 290
BmiI GGNNCC 2 cut(s) 171, 448
BmrFI CCNGG 4 cut(s) 29, 59, 168, 324
BmsI GCATC 1 cut(s) 463
BpmI CTGGAG 1 cut(s) 340
BpuMI CCSGG 1 cut(s) 168
BsaAI YACGTR 1 cut(s) 339
BsaJI CCNNGG 4 cut(s) 58, 223, 278, 415
Bsc4I CCNNNNNNNGG 3 cut(s) 64, 249, 443
Bse118I RCCGGY 1 cut(s) 443
Bse1I ACTGG 3 cut(s) 254, 357, 401
BseBI CCWGG 3 cut(s) 29, 59, 324
BseDI CCNNGG 4 cut(s) 58, 223, 278, 415
BseLI CCNNNNNNNGG 3 cut(s) 64, 249, 443
BseMII CTCAG 1 cut(s) 285
BseNI ACTGG 3 cut(s) 254, 357, 401
BsePI GCGCGC 1 cut(s) 403
BseRI GAGGAG 1 cut(s) 207
BseXI GCAGC 1 cut(s) 427
Bsh1236I CGCG 2 cut(s) 403, 405
BshNI GGYRCC 1 cut(s) 446
BsiSI CCGG 2 cut(s) 167, 444
BsiWI CGTACG 1 cut(s) 339
BslFI GGGAC 1 cut(s) 183
BslI CCNNNNNNNGG 3 cut(s) 64, 249, 443
BsmAI GTCTC 1 cut(s) 189
BsmFI GGGAC 1 cut(s) 183
Bsp19I CCATGG 2 cut(s) 278, 415
BspACI CCGC 1 cut(s) 201
BspCNI CTCAG 1 cut(s) 286
BspFNI CGCG 2 cut(s) 403, 405
BspLI GGNNCC 2 cut(s) 171, 448
BspT107I GGYRCC 1 cut(s) 446
BsrFI RCCGGY 1 cut(s) 443
BsrI ACTGG 3 cut(s) 254, 357, 401
BssAI RCCGGY 1 cut(s) 443
BssECI CCNNGG 4 cut(s) 58, 223, 278, 415
BssHII GCGCGC 1 cut(s) 403
BssT1I CCWWGG 3 cut(s) 223, 278, 415
Bst2UI CCWGG 3 cut(s) 29, 59, 324
Bst4CI ACNGT 5 cut(s) 11, 151, 184, 236, 412
Bst6I CTCTTC 1 cut(s) 168
BstBAI YACGTR 1 cut(s) 339
BstC8I GCNNGC 3 cut(s) 384, 405, 445
BstDEI CTNAG 2 cut(s) 34, 294
BstDSI CCRYGG 2 cut(s) 278, 415
BstENI CCTNNNNNAGG 1 cut(s) 62
BstFNI CGCG 2 cut(s) 403, 405
BstH2I RGCGCY 1 cut(s) 78
BstHHI GCGC 3 cut(s) 77, 405, 407
BstMAI GTCTC 1 cut(s) 189
BstMWI GCNNNNNNNGC 1 cut(s) 74
BstNI CCWGG 3 cut(s) 29, 59, 324
BstNSI RCATGY 1 cut(s) 386
BstSCI CCNGG 4 cut(s) 27, 57, 166, 322
BstUI CGCG 2 cut(s) 403, 405
BstV1I GCAGC 1 cut(s) 427
BtgI CCRYGG 2 cut(s) 278, 415
BtsIMutI CAGTG 3 cut(s) 180, 247, 364
Cac8I GCNNGC 3 cut(s) 384, 405, 445
CfoI GCGC 3 cut(s) 77, 405, 407
Cfr10I RCCGGY 1 cut(s) 443
Cfr13I GGNCC 2 cut(s) 170, 290
CseI GACGC 1 cut(s) 409
Csp6I GTAC 2 cut(s) 340, 498
CviAII CATG 5 cut(s) 19, 254, 279, 383, 416
CviJI RGCY 4 cut(s) 38, 68, 124, 440
CviKI_1 RGCY 4 cut(s) 38, 68, 124, 440
CviQI GTAC 2 cut(s) 340, 498
DdeI CTNAG 2 cut(s) 34, 294
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
Eco130I CCWWGG 3 cut(s) 223, 278, 415
Eco47I GGWCC 2 cut(s) 170, 290
EcoNI CCTNNNNNAGG 1 cut(s) 62
EcoRII CCWGG 3 cut(s) 27, 57, 322
EcoT14I CCWWGG 3 cut(s) 223, 278, 415
ErhI CCWWGG 3 cut(s) 223, 278, 415
FaeI CATG 5 cut(s) 22, 257, 282, 386, 419
FalI AAGNNNNNCTT 2 cut(s) 128, 160
FaqI GGGAC 1 cut(s) 183
FatI CATG 5 cut(s) 18, 253, 278, 382, 415
Fnu4HI GCNGC 1 cut(s) 441
Fsp4HI GCNGC 1 cut(s) 441
FspBI CTAG 1 cut(s) 494
GlaI GCGC 3 cut(s) 76, 404, 406
GluI GCNGC 1 cut(s) 441
GsuI CTGGAG 1 cut(s) 340
HaeII RGCGCY 1 cut(s) 78
HapII CCGG 2 cut(s) 167, 444
HgaI GACGC 1 cut(s) 409
HhaI GCGC 3 cut(s) 77, 405, 407
Hin1II CATG 5 cut(s) 22, 257, 282, 386, 419
Hin6I GCGC 3 cut(s) 75, 403, 405
HinP1I GCGC 3 cut(s) 75, 403, 405
HpaII CCGG 2 cut(s) 167, 444
HphI GGTGA 1 cut(s) 232
Hpy166II GTNNAC 2 cut(s) 187, 217
Hpy188I TCNGA 1 cut(s) 286
Hpy8I GTNNAC 2 cut(s) 187, 217
HpyAV CCTTC 2 cut(s) 254, 359
HpyCH4III ACNGT 5 cut(s) 11, 151, 184, 236, 412
HpyCH4IV ACGT 2 cut(s) 213, 338
HpyCH4V TGCA 4 cut(s) 103, 422, 464, 476
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
HpyF3I CTNAG 2 cut(s) 34, 294
HpySE526I ACGT 2 cut(s) 213, 338
Hsp92II CATG 5 cut(s) 22, 257, 282, 386, 419
HspAI GCGC 3 cut(s) 75, 403, 405
KroI GCCGGC 1 cut(s) 443
KroNI GCCGGC 1 cut(s) 445
Lsp1109I GCAGC 1 cut(s) 427
LweI GCATC 1 cut(s) 463
MaeI CTAG 1 cut(s) 494
MaeII ACGT 2 cut(s) 213, 338
MaeIII GTNAC 3 cut(s) 11, 238, 392
MboII GAAGA 2 cut(s) 155, 374
MluCI AATT 1 cut(s) 523
MnlI CCTC 1 cut(s) 185
MroNI GCCGGC 1 cut(s) 443
MseI TTAA 3 cut(s) 146, 522, 530
MslI CAYNNNNRTG 3 cut(s) 87, 252, 376
MspA1I CMGCKG 1 cut(s) 440
MspI CCGG 2 cut(s) 167, 444
MspR9I CCNGG 4 cut(s) 29, 59, 168, 324
MvaI CCWGG 3 cut(s) 29, 59, 324
MvnI CGCG 2 cut(s) 403, 405
MwoI GCNNNNNNNGC 1 cut(s) 74
NaeI GCCGGC 1 cut(s) 445
NciI CCSGG 1 cut(s) 168
NcoI CCATGG 2 cut(s) 278, 415
NgoMIV GCCGGC 1 cut(s) 443
NlaIII CATG 5 cut(s) 22, 257, 282, 386, 419
NlaIV GGNNCC 2 cut(s) 171, 448
NmuCI GTSAC 2 cut(s) 238, 392
NspI RCATGY 1 cut(s) 386
PaeI GCATGC 1 cut(s) 386
PauI GCGCGC 1 cut(s) 403
PdiI GCCGGC 1 cut(s) 445
Pfl23II CGTACG 1 cut(s) 339
PfoI TCCNGGA 1 cut(s) 166
PkrI GCNGC 1 cut(s) 442
Ppu21I YACGTR 1 cut(s) 339
PshBI ATTAAT 1 cut(s) 522
Psp1406I AACGTT 1 cut(s) 213
Psp6I CCWGG 3 cut(s) 27, 57, 322
PspGI CCWGG 3 cut(s) 27, 57, 322
PspLI CGTACG 1 cut(s) 339
PspN4I GGNNCC 2 cut(s) 171, 448
PspPI GGNCC 2 cut(s) 170, 290
PteI GCGCGC 1 cut(s) 403
PvuII CAGCTG 1 cut(s) 440
RsaI GTAC 2 cut(s) 341, 499
RsaNI GTAC 2 cut(s) 340, 498
RseI CAYNNNNRTG 3 cut(s) 87, 252, 376
SaqAI TTAA 3 cut(s) 146, 522, 530
SatI GCNGC 1 cut(s) 441
Sau96I GGNCC 2 cut(s) 170, 290
ScrFI CCNGG 4 cut(s) 29, 59, 168, 324
SetI ASST 6 cut(s) 40, 216, 295, 341, 442, 499
SfaNI GCATC 1 cut(s) 463
SinI GGWCC 2 cut(s) 170, 290
SmiMI CAYNNNNRTG 3 cut(s) 87, 252, 376
SphI GCATGC 1 cut(s) 386
Sse9I AATT 1 cut(s) 523
SsiI CCGC 1 cut(s) 201
SspMI CTAG 1 cut(s) 494
StyD4I CCNGG 4 cut(s) 27, 57, 166, 322
StyI CCWWGG 3 cut(s) 223, 278, 415
TaaI ACNGT 5 cut(s) 11, 151, 184, 236, 412
TaiI ACGT 2 cut(s) 216, 341
TasI AATT 1 cut(s) 523
Tru1I TTAA 3 cut(s) 146, 522, 530
Tru9I TTAA 3 cut(s) 146, 522, 530
TscAI CASTG 3 cut(s) 187, 254, 364
TseFI GTSAC 2 cut(s) 238, 392
TseI GCWGC 1 cut(s) 440
Tsp45I GTSAC 2 cut(s) 238, 392
TspDTI ATGAA 1 cut(s) 493
TspRI CASTG 3 cut(s) 187, 254, 364
VpaK11BI GGWCC 2 cut(s) 170, 290
VspI ATTAAT 1 cut(s) 522
XagI CCTNNNNNAGG 1 cut(s) 62
XceI RCATGY 1 cut(s) 386
XcmI CCANNNNNNNNNTGG 1 cut(s) 276
XspI CTAG 1 cut(s) 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.