Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000359

Physical Location & Seq

Genomic Coordinates Reverse (-)

38752427 .. 38754622

Gene Structure 2196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG314300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1707 bp

ATGAAGGTTTCCAGAATTACCCTGCATCTGCAACTTCTGGGGTTGTTATTGGCTGTTAATGGCTTCCTCCATTGCCAAGCTTGGCCAGCTCGTTACACTTTTGTGGTGGAAAACACTCCATACAAGAGACTCTGCAGCACAAAGAACATCTTGACTGTAAATGGCCAGTTTCCTGGACCGACTTTGTATGCTCACAAAGGAGACACTATCATCGTCGATGTCTTTAACAAAGGCAATCGTAACATTACTCTCCACTGGCATGGTGTTGCGCAACCAAGATATCCATGGTCGGACGGACCAGAGTATATCACACAGTGCCCAATTCAACCAGGGGCCAAGTTCACCCAAAAGATCATTTTCTCGAAGGAGGAAGGCACCCTTTGGTGGCATGCTCACAGTGAGTGGGACCGTGCCACAGTCCATGGTCCCATCATCATATACCCCAACAAGAACAACAAATACCCCTTTGCTAAGCCTCATGCAGAAATTTCAATCATATTAGGAGAGTGGTGGAAGGTAGATATAGGGAAGCTTTATACTCAAACTATTCAATCCGGCGGGGACCCTAATACTTCCGACGCTTACCTCATTAATGGTCAACCTGGCGATCTGTATCCATGCTCTAAATCAGAGACGTTCAAGATGATGGTTGATTATGGCAAAACCTACCTACTGAGACTAATCAACTCCGGTGTGCAAGAGATTCTGTTTTTCGCCATCGCCAATCACAAAGTCACAGTTGTAGGGACAGATGCTAGCTACACCAAACCTTTCACAACCGATTACGTCACAATCTCACCTGGTCAAACCATTGACCTTTTGCTCCATGCTAATCAGAGGCCTAACCACTACTACATGGCCGCTACAGCCTACGTAGGTGGCGCTGTTCCTTATGATAACACCACCACCACAGCCCTACTACAATACACGAATCGGGGTTACACCCCTTCTTCAACCCCTTTGTTTCCTAATCTTCCTGCTCACAATGACACTAGTGCATCAGTTCATTTTAGTGGTAGTCTCAAGAGCTTGGCTGATAAAAACCACCCCATTGACGTTCCACTAAAAATTACAACTCCCTTGTTTTATACCCTCTCCGTCAACACGTTCCAGTGCCCCAATAATTCATGCGCCGGGCCTAATGGGACGCGTCTGGCTGCTAGTATAAACAACATTAGCTTTGAGAACCCTAGCATTGACATACTACAAGCTTACTATTTCCATGTCAACGGGGTATTTGGAACTCGGTTTCCAAGTTCCCCGCCTTTGCTGTTTAACTTTACAGCGCAGTACTTGCCGCTGTACCTTCAGACCCCGAAGCGAAGGACAGAGGTGAAGGTACTGGAGTACAACGCAACAGTGGAGCTTGTGTTTCAGGGGACTAATTTGGTGGCAGGGGATGACCATCCAATGCATCTTCATGGTTACAGTTTCTATGTGGTTGGATTGGGGCTTGGGAACTTTGACAAGGATAAGGACCCTTTGAAATATAATCTTGTTGATCCTCCTCTTCAAAACACCATTGCTGTCCCTGTAAATGGGTGGGCTACCATCAGATTCAAGGCTGATAATCCTGGAGTTTGGTTTATGCATTGCCATCTGGATAGGCATATGTCATGGGGGATGGATACGACATTCATAGTGAAAAATGGAAAGGGTCCTGAAGCTCAAATCTTACCTCCACCACCAGATATGCCACCTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0010023 GO:0010035 GO:0010038 GO:0016491 GO:0016722 GO:0017144 GO:0018130 GO:0018958 GO:0019438 GO:0019748 GO:0042221 GO:0043167 GO:0043169 GO:0044237 GO:0044249 GO:0044550 GO:0046189 GO:0046483 GO:0046688 GO:0046872 GO:0046914 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

568

Amino Acids

63.51

Weight (kDa)

8.24

Isoelectric Point (pI)

33.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase_3	PF07732	36 - 150	2e-39	Multicopper oxidase
Cu-oxidase	PF00394	163 - 311	1.5e-39	Multicopper oxidase
Cu-oxidase_2	PF07731	417 - 551	4.9e-41	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48100
fragaria_vesca	FvH4_1g24380 FvH4_2g05800 FvH4_5g30730
malus_domestica	MD01G1234900.v1.1 MD01G1235100.v1.1 MD01G1235200.v1.1 MD07G1307400.v1.1 MD07G1308000.v1.1 MD10G1042300.v1.1 MD10G1042400.v1.1 MD10G1042500.v1.1 MD10G1042700.v1.1
prunus_persica	Prupe.2G325200_v2.0.a1 Prupe.6G242000_v2.0.a1 Prupe.8G046800_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1
pyrus_communis	pycom01g24320 pycom01g24330 pycom07g28020 pycom10g02950 pycom17g03690
rosa_chinensis	RchiOBHm_Chr1g0384031 RchiOBHm_Chr2g0120941 RchiOBHm_Chr2g0120971 RchiOBHm_Chr2g0121051 RchiOBHm_Chr2g0121181 RchiOBHm_Chr2g0121211 RchiOBHm_Chr3g0473931 RchiOBHm_Chr3g0473941 RchiOBHm_Chr6g0257941 RchiOBHm_Chr6g0284781
rosa_laevigata	RLG00000008541 RLG00000014737 RLG00000018604 RLG00000018607 RLG00000018608 RLG00000018610 RLG00000018611 RLG00000018613 RLG00000023967 RLG00000023970 RLG00000026078 RLG00000035183
rosa_multiflora	Rmu_sc0000079.1_g000043 Rmu_sc0000079.1_g000062 Rmu_sc0000079.1_g000069 Rmu_sc0000621.1_g000019 Rmu_sc0000621.1_g000025 Rmu_sc0000621.1_g000041 Rmu_sc0000652.1_g000018 Rmu_sc0002414.1_g000030 Rmu_sc0002414.1_g000033 Rmu_sc0002843.1_g000016 Rmu_sc0005137.1_g000035 Rmu_sc0005139.1_g000021
rosa_roxburghii	Rroxscaffold_2G00122530 Rroxscaffold_2G00122570 Rroxscaffold_2G00122580 Rroxscaffold_2G00122650 Rroxscaffold_4G00277080 Rroxscaffold_6G00407610 Rroxscaffold_6G00407620 Rroxscaffold_7G00209050
rosa_rugosa	Rorug01G0444300 Rorug02G0232700 Rorug02G0232700 Rorug02G0232900 Rorug03G0137100 Rorug05G0565600 Rorug05G0566500
rosa_samantha	Rh1BG427300 Rh1CG440100 Rh2CG278100 Rh2CG278200 Rh2CG278700 Rh2CG278800 Rh2CG279100 Rh2DG314200 Rh2DG314300 Rh2DG314600 Rh3AG187200 Rh3DG211700 Rh3DG211800 Rh5AG356600 Rh6BG078000 Rh6BG078700 Rh6CG073300 Rh6DG070300 Rh6DG190200 Rh6DG274700 Rh7BG365900
rosa_wichuraiana	Rw0G018400 Rw1G040270 Rw2G023160 Rw2G023170 Rw2G023190 Rw2G023200 Rw2G023220 Rw2G023230 Rw3G017140 Rw3G017150 Rw4G012840 Rw6G007580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	270
AccB1I	GGYRCC	1 cut(s)	374
AccII	CGCG	1 cut(s)	1150
AciI	CCGC	4 cut(s)	558, 861, 1262, 1298
AclWI	GGATC	1 cut(s)	1496
AcoI	YGGCCR	3 cut(s)	83, 163, 858
AcsI	RAATTY	1 cut(s)	486
AcuI	CTGAAG	2 cut(s)	1292, 1683
AdeI	CACNNNGTG	1 cut(s)	315
AfaI	GTAC	4 cut(s)	1292, 1304, 1341, 1349
AfiI	CCNNNNNNNGG	2 cut(s)	384, 1538
AflIII	ACRYGT	2 cut(s)	1104, 1148
AgsI	TTSAA	8 cut(s)	326, 492, 551, 640, 954, 1486, 1514, 1561
AhlI	ACTAGT	1 cut(s)	992
AjnI	CCWGG	5 cut(s)	172, 328, 601, 799, 1573
AleI	CACNNNNGTG	1 cut(s)	101
AloI	GAACNNNNNNTCC	2 cut(s)	1234, 1266
AluBI	AGCT	9 cut(s)	80, 89, 532, 759, 1029, 1179, 1211, 1366, 1667
AluI	AGCT	9 cut(s)	80, 89, 532, 759, 1029, 1179, 1211, 1366, 1667
Alw26I	GTCTC	5 cut(s)	121, 195, 626, 670, 1025
AlwI	GGATC	1 cut(s)	1496
AoxI	GGCC	6 cut(s)	83, 163, 333, 839, 858, 1136
ApeKI	GCWGC	2 cut(s)	135, 1157
ApoI	RAATTY	1 cut(s)	486
AseI	ATTAAT	1 cut(s)	591
AspLEI	GCGC	4 cut(s)	271, 884, 1133, 1288
AspS9I	GGNCC	9 cut(s)	176, 296, 333, 406, 425, 562, 1136, 1477, 1658
AsuC2I	CCSGG	1 cut(s)	1135
AsuHPI	GGTGA	3 cut(s)	334, 789, 1345
AsuNHI	GCTAGC	1 cut(s)	755
AvaII	GGWCC	7 cut(s)	176, 296, 406, 425, 562, 1477, 1658
BaeGI	GKGCMC	2 cut(s)	320, 1118
BaeI	ACNNNNGTAYC	2 cut(s)	1331, 1364
BalI	TGGCCA	2 cut(s)	85, 165
BanI	GGYRCC	1 cut(s)	374
BbvI	GCAGC	2 cut(s)	147, 1144
BccI	CCATC	7 cut(s)	437, 640, 725, 1413, 1559, 1605, 1618
BciT130I	CCWGG	5 cut(s)	174, 330, 603, 801, 1575
BciVI	GTATCC	2 cut(s)	624, 1621
BcnI	CCSGG	1 cut(s)	1135
BcoDI	GTCTC	5 cut(s)	121, 195, 626, 670, 1025
BcuI	ACTAGT	1 cut(s)	992
BfaI	CTAG	4 cut(s)	756, 993, 1161, 1191
BfmI	CTRYAG	2 cut(s)	133, 864
BfoI	RGCGCY	1 cut(s)	885
BfuI	GTATCC	2 cut(s)	624, 1621
BisI	GCNGC	4 cut(s)	136, 861, 1158, 1298
BlpI	GCTNAGC	1 cut(s)	471
BlsI	GCNGC	4 cut(s)	137, 862, 1159, 1299
BmcAI	AGTACT	1 cut(s)	1292
Bme1390I	CCNGG	6 cut(s)	174, 330, 603, 801, 1135, 1575
Bme18I	GGWCC	7 cut(s)	176, 296, 406, 425, 562, 1477, 1658
BmgT120I	GGNCC	9 cut(s)	176, 296, 333, 406, 425, 562, 1136, 1477, 1658
BmiI	GGNNCC	8 cut(s)	334, 376, 407, 427, 563, 564, 1479, 1659
BmrFI	CCNGG	6 cut(s)	174, 330, 603, 801, 1135, 1575
BmsI	GCATC	4 cut(s)	34, 742, 1007, 1423
BmtI	GCTAGC	1 cut(s)	759
BpmI	CTGGAG	2 cut(s)	1364, 1596
Bpu1102I	GCTNAGC	1 cut(s)	471
BpuEI	CTTGAG	1 cut(s)	1007
BpuMI	CCSGG	1 cut(s)	1135
BsaAI	YACGTR	1 cut(s)	874
BsaBI	GATNNNNATC	2 cut(s)	612, 1404
BsaJI	CCNNGG	3 cut(s)	284, 329, 421
BsaWI	WCCGGW	1 cut(s)	689
BsaXI	ACNNNNNCTCC	2 cut(s)	1355, 1385
Bsc4I	CCNNNNNNNGG	2 cut(s)	384, 1538
Bse1I	ACTGG	4 cut(s)	166, 260, 1111, 1347
Bse3DI	GCAATG	3 cut(s)	70, 1521, 1591
Bse8I	GATNNNNATC	2 cut(s)	612, 1404
BseBI	CCWGG	5 cut(s)	174, 330, 603, 801, 1575
BseDI	CCNNGG	3 cut(s)	284, 329, 421
BseGI	GGATG	3 cut(s)	1405, 1405, 1629
BseJI	GATNNNNATC	2 cut(s)	612, 1404
BseLI	CCNNNNNNNGG	2 cut(s)	384, 1538
BseMI	GCAATG	3 cut(s)	70, 1521, 1591
BseMII	CTCAG	1 cut(s)	665
BseNI	ACTGG	4 cut(s)	166, 260, 1111, 1347
BseRI	GAGGAG	1 cut(s)	1497
BseSI	GKGCMC	2 cut(s)	320, 1118
BseXI	GCAGC	2 cut(s)	147, 1144
Bsh1236I	CGCG	1 cut(s)	1150
BshFI	GGCC	6 cut(s)	85, 165, 335, 841, 860, 1138
BshNI	GGYRCC	1 cut(s)	374
BsiSI	CCGG	3 cut(s)	555, 690, 1134
BslFI	GGGAC	7 cut(s)	411, 419, 575, 760, 1159, 1393, 1514
BslI	CCNNNNNNNGG	2 cut(s)	384, 1538
BsmAI	GTCTC	5 cut(s)	121, 195, 626, 670, 1025
BsmBI	CGTCTC	1 cut(s)	626
BsmFI	GGGAC	7 cut(s)	411, 419, 575, 760, 1159, 1393, 1514
BsnI	GGCC	6 cut(s)	85, 165, 335, 841, 860, 1138
Bsp1286I	GDGCHC	2 cut(s)	320, 1118
Bsp143I	GATC	3 cut(s)	351, 607, 1501
Bsp1720I	GCTNAGC	1 cut(s)	471
Bsp19I	CCATGG	2 cut(s)	284, 421
BspACI	CCGC	4 cut(s)	558, 861, 1262, 1298
BspANI	GGCC	6 cut(s)	85, 165, 335, 841, 860, 1138
BspCNI	CTCAG	1 cut(s)	666
BspFNI	CGCG	1 cut(s)	1150
BspLI	GGNNCC	8 cut(s)	334, 376, 407, 427, 563, 564, 1479, 1659
BspMAI	CTGCAG	1 cut(s)	137
BspOI	GCTAGC	1 cut(s)	759
BspPI	GGATC	1 cut(s)	1496
BspT107I	GGYRCC	1 cut(s)	374
BsrDI	GCAATG	3 cut(s)	70, 1521, 1591
BsrI	ACTGG	4 cut(s)	166, 260, 1111, 1347
BssECI	CCNNGG	3 cut(s)	284, 329, 421
BssMI	GATC	3 cut(s)	351, 607, 1501
BssT1I	CCWWGG	2 cut(s)	284, 421
Bst2UI	CCWGG	5 cut(s)	174, 330, 603, 801, 1575
Bst4CI	ACNGT	8 cut(s)	157, 315, 398, 410, 418, 739, 1360, 1430
Bst6I	CTCTTC	1 cut(s)	1515
BstAPI	GCANNNNNTGC	1 cut(s)	1294
BstBAI	YACGTR	1 cut(s)	874
BstC8I	GCNNGC	3 cut(s)	87, 390, 757
BstDEI	CTNAG	2 cut(s)	471, 674
BstDSI	CCRYGG	2 cut(s)	284, 421
BstF5I	GGATG	3 cut(s)	1405, 1405, 1629
BstFNI	CGCG	1 cut(s)	1150
BstH2I	RGCGCY	1 cut(s)	885
BstHHI	GCGC	4 cut(s)	271, 884, 1133, 1288
BstKTI	GATC	3 cut(s)	354, 610, 1504
BstMAI	GTCTC	5 cut(s)	121, 195, 626, 670, 1025
BstMBI	GATC	3 cut(s)	351, 607, 1501
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 866, 1294
BstNI	CCWGG	5 cut(s)	174, 330, 603, 801, 1575
BstNSI	RCATGY	1 cut(s)	392
BstSCI	CCNGG	6 cut(s)	172, 328, 601, 799, 1133, 1573
BstSFI	CTRYAG	2 cut(s)	133, 864
BstSLI	GKGCMC	2 cut(s)	320, 1118
BstSNI	TACGTA	1 cut(s)	874
BstUI	CGCG	1 cut(s)	1150
BstV1I	GCAGC	2 cut(s)	147, 1144
BstXI	CCANNNNNNTGG	2 cut(s)	173, 260
BsuI	GTATCC	2 cut(s)	624, 1621
BsuRI	GGCC	6 cut(s)	85, 165, 335, 841, 860, 1138
BtgI	CCRYGG	2 cut(s)	284, 421
BtgZI	GCGATG	1 cut(s)	703
BtsCI	GGATG	3 cut(s)	1405, 1405, 1629
BtsIMutI	CAGTG	5 cut(s)	253, 320, 403, 1118, 1365
Cac8I	GCNNGC	3 cut(s)	87, 390, 757
CfoI	GCGC	4 cut(s)	271, 884, 1133, 1288
Cfr13I	GGNCC	9 cut(s)	176, 296, 333, 406, 425, 562, 1136, 1477, 1658
CseI	GACGC	3 cut(s)	587, 1139, 1156
CsiI	ACCWGGT	1 cut(s)	799
Csp6I	GTAC	4 cut(s)	1291, 1303, 1340, 1348
CviQI	GTAC	4 cut(s)	1291, 1303, 1340, 1348
DdeI	CTNAG	2 cut(s)	471, 674
DpnI	GATC	3 cut(s)	353, 609, 1503
DpnII	GATC	3 cut(s)	351, 607, 1501
DraIII	CACNNNGTG	1 cut(s)	315
EaeI	YGGCCR	3 cut(s)	83, 163, 858
Eam1104I	CTCTTC	1 cut(s)	1515
EarI	CTCTTC	1 cut(s)	1515
Eco105I	TACGTA	1 cut(s)	874
Eco130I	CCWWGG	2 cut(s)	284, 421
Eco147I	AGGCCT	1 cut(s)	841
Eco32I	GATATC	1 cut(s)	281
Eco47I	GGWCC	7 cut(s)	176, 296, 406, 425, 562, 1477, 1658
Eco57I	CTGAAG	2 cut(s)	1292, 1683
EcoO109I	RGGNCCY	3 cut(s)	562, 1477, 1658
EcoRII	CCWGG	5 cut(s)	172, 328, 601, 799, 1573
EcoRV	GATATC	1 cut(s)	281
EcoT14I	CCWWGG	2 cut(s)	284, 421
EcoT22I	ATGCAT	2 cut(s)	1416, 1593
ErhI	CCWWGG	2 cut(s)	284, 421
Esp3I	CGTCTC	1 cut(s)	626
FalI	AAGNNNNNCTT	4 cut(s)	134, 166, 363, 395
FaqI	GGGAC	7 cut(s)	411, 419, 575, 760, 1159, 1393, 1514
FauI	CCCGC	2 cut(s)	551, 1269
FauNDI	CATATG	1 cut(s)	1611
Fnu4HI	GCNGC	4 cut(s)	136, 861, 1158, 1298
FokI	GGATG	3 cut(s)	1392, 1412, 1636
Fsp4HI	GCNGC	4 cut(s)	136, 861, 1158, 1298
FspBI	CTAG	4 cut(s)	756, 993, 1161, 1191
FspI	TGCGCA	1 cut(s)	270
GlaI	GCGC	4 cut(s)	270, 883, 1132, 1287
GluI	GCNGC	4 cut(s)	136, 861, 1158, 1298
GsuI	CTGGAG	2 cut(s)	1364, 1596
HaeII	RGCGCY	1 cut(s)	885
HaeIII	GGCC	6 cut(s)	85, 165, 335, 841, 860, 1138
HapII	CCGG	3 cut(s)	555, 690, 1134
HgaI	GACGC	3 cut(s)	587, 1139, 1156
HhaI	GCGC	4 cut(s)	271, 884, 1133, 1288
Hin6I	GCGC	4 cut(s)	269, 882, 1131, 1286
HinP1I	GCGC	4 cut(s)	269, 882, 1131, 1286
HincII	GTYRAC	3 cut(s)	599, 1102, 1228
HindII	GTYRAC	3 cut(s)	599, 1102, 1228
HindIII	AAGCTT	3 cut(s)	78, 530, 1209
HinfI	GANTC	4 cut(s)	129, 703, 931, 1557
HpaII	CCGG	3 cut(s)	555, 690, 1134
HphI	GGTGA	3 cut(s)	334, 789, 1345
Hpy166II	GTNNAC	4 cut(s)	342, 599, 1102, 1228
Hpy188I	TCNGA	6 cut(s)	292, 577, 631, 837, 1311, 1556
Hpy188III	TCNNGA	7 cut(s)	12, 151, 361, 640, 1024, 1601, 1661
Hpy8I	GTNNAC	4 cut(s)	342, 599, 1102, 1228
Hpy99I	CGWCG	2 cut(s)	218, 581
HpyAV	CCTTC	7 cut(s)	358, 365, 508, 957, 1316, 1317, 1330
HpyCH4III	ACNGT	8 cut(s)	157, 315, 398, 410, 418, 739, 1360, 1430
HpyCH4IV	ACGT	5 cut(s)	635, 786, 873, 1056, 1106
HpyCH4V	TGCA	8 cut(s)	25, 31, 135, 482, 697, 998, 1414, 1591
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 866, 1294
HpyF3I	CTNAG	2 cut(s)	471, 674
HpySE526I	ACGT	5 cut(s)	635, 786, 873, 1056, 1106
HspAI	GCGC	4 cut(s)	269, 882, 1131, 1286
KflI	GGGWCCC	1 cut(s)	562
Kzo9I	GATC	3 cut(s)	351, 607, 1501
LmnI	GCTCC	2 cut(s)	828, 1363
Lsp1109I	GCAGC	2 cut(s)	147, 1144
LweI	GCATC	4 cut(s)	34, 742, 1007, 1423
MabI	ACCWGGT	1 cut(s)	799
MaeI	CTAG	4 cut(s)	756, 993, 1161, 1191
MaeII	ACGT	5 cut(s)	635, 786, 873, 1056, 1106
MaeIII	GTNAC	6 cut(s)	92, 239, 733, 787, 938, 1424
MalI	GATC	3 cut(s)	353, 609, 1503
MboI	GATC	3 cut(s)	351, 607, 1501
MboII	GAAGA	4 cut(s)	942, 965, 1409, 1502
MhlI	GDGCHC	2 cut(s)	320, 1118
MlsI	TGGCCA	2 cut(s)	85, 165
MluCI	AATT	6 cut(s)	15, 321, 486, 1068, 1123, 1384
MluI	ACGCGT	1 cut(s)	1148
MluNI	TGGCCA	2 cut(s)	85, 165
MlyI	GAGTC	1 cut(s)	123
MmeI	TCCRAC	3 cut(s)	270, 600, 1423
Mox20I	TGGCCA	2 cut(s)	85, 165
Mph1103I	ATGCAT	2 cut(s)	1416, 1593
MscI	TGGCCA	2 cut(s)	85, 165
MseI	TTAA	4 cut(s)	57, 225, 591, 1275
MslI	CAYNNNNRTG	4 cut(s)	101, 258, 1011, 1419
Msp20I	TGGCCA	2 cut(s)	85, 165
MspA1I	CMGCKG	1 cut(s)	1300
MspI	CCGG	3 cut(s)	555, 690, 1134
MspR9I	CCNGG	6 cut(s)	174, 330, 603, 801, 1135, 1575
MvaI	CCWGG	5 cut(s)	174, 330, 603, 801, 1575
MvnI	CGCG	1 cut(s)	1150
MwoI	GCNNNNNNNGC	3 cut(s)	86, 866, 1294
NciI	CCSGG	1 cut(s)	1135
NcoI	CCATGG	2 cut(s)	284, 421
NdeI	CATATG	1 cut(s)	1611
NdeII	GATC	3 cut(s)	351, 607, 1501
NheI	GCTAGC	1 cut(s)	755
NlaIV	GGNNCC	8 cut(s)	334, 376, 407, 427, 563, 564, 1479, 1659
NmuCI	GTSAC	2 cut(s)	733, 787
NsbI	TGCGCA	1 cut(s)	270
NsiI	ATGCAT	2 cut(s)	1416, 1593
NspI	RCATGY	1 cut(s)	392
OliI	CACNNNNGTG	1 cut(s)	101
PaeI	GCATGC	1 cut(s)	392
PceI	AGGCCT	1 cut(s)	841
PfeI	GAWTC	3 cut(s)	703, 931, 1557
PfoI	TCCNGGA	2 cut(s)	172, 1573
PkrI	GCNGC	4 cut(s)	137, 862, 1159, 1299
PleI	GAGTC	1 cut(s)	123
PpsI	GAGTC	1 cut(s)	123
Ppu21I	YACGTR	1 cut(s)	874
PpuMI	RGGWCCY	3 cut(s)	562, 1477, 1658
PshBI	ATTAAT	1 cut(s)	591
Psp5II	RGGWCCY	3 cut(s)	562, 1477, 1658
Psp6I	CCWGG	5 cut(s)	172, 328, 601, 799, 1573
PspGI	CCWGG	5 cut(s)	172, 328, 601, 799, 1573
PspN4I	GGNNCC	8 cut(s)	334, 376, 407, 427, 563, 564, 1479, 1659
PspPI	GGNCC	9 cut(s)	176, 296, 333, 406, 425, 562, 1136, 1477, 1658
PspPPI	RGGWCCY	3 cut(s)	562, 1477, 1658
PsrI	GAACNNNNNNTAC	2 cut(s)	443, 475
PstI	CTGCAG	1 cut(s)	137
RsaI	GTAC	4 cut(s)	1292, 1304, 1341, 1349
RsaNI	GTAC	4 cut(s)	1291, 1303, 1340, 1348
RseI	CAYNNNNRTG	4 cut(s)	101, 258, 1011, 1419
SaqAI	TTAA	4 cut(s)	57, 225, 591, 1275
SatI	GCNGC	4 cut(s)	136, 861, 1158, 1298
Sau3AI	GATC	3 cut(s)	351, 607, 1501
Sau96I	GGNCC	9 cut(s)	176, 296, 333, 406, 425, 562, 1136, 1477, 1658
ScaI	AGTACT	1 cut(s)	1292
SchI	GAGTC	1 cut(s)	123
ScrFI	CCNGG	6 cut(s)	174, 330, 603, 801, 1135, 1575
SduI	GDGCHC	2 cut(s)	320, 1118
SexAI	ACCWGGT	1 cut(s)	799
SfaNI	GCATC	4 cut(s)	34, 742, 1007, 1423
SfcI	CTRYAG	2 cut(s)	133, 864
SinI	GGWCC	7 cut(s)	176, 296, 406, 425, 562, 1477, 1658
SmiMI	CAYNNNNRTG	4 cut(s)	101, 258, 1011, 1419
SmlI	CTYRAG	1 cut(s)	1022
SmoI	CTYRAG	1 cut(s)	1022
SnaBI	TACGTA	1 cut(s)	874
SpeI	ACTAGT	1 cut(s)	992
SphI	GCATGC	1 cut(s)	392
Sse9I	AATT	6 cut(s)	15, 321, 486, 1068, 1123, 1384
SseBI	AGGCCT	1 cut(s)	841
SsiI	CCGC	4 cut(s)	558, 861, 1262, 1298
SspMI	CTAG	4 cut(s)	756, 993, 1161, 1191
StuI	AGGCCT	1 cut(s)	841
StyD4I	CCNGG	6 cut(s)	172, 328, 601, 799, 1133, 1573
StyI	CCWWGG	2 cut(s)	284, 421
TaaI	ACNGT	8 cut(s)	157, 315, 398, 410, 418, 739, 1360, 1430
TaiI	ACGT	5 cut(s)	638, 789, 876, 1059, 1109
TaqI	TCGA	2 cut(s)	216, 362
TaqII	GACCGA	1 cut(s)	193
TasI	AATT	6 cut(s)	15, 321, 486, 1068, 1123, 1384
TatI	WGTACW	2 cut(s)	1290, 1347
TauI	GCSGC	2 cut(s)	863, 1300
TfiI	GAWTC	3 cut(s)	703, 931, 1557
Tru1I	TTAA	4 cut(s)	57, 225, 591, 1275
Tru9I	TTAA	4 cut(s)	57, 225, 591, 1275
TscAI	CASTG	5 cut(s)	260, 320, 403, 1118, 1365
TseFI	GTSAC	2 cut(s)	733, 787
TseI	GCWGC	2 cut(s)	135, 1157
Tsp45I	GTSAC	2 cut(s)	733, 787
TspDTI	ATGAA	5 cut(s)	17, 995, 1116, 1409, 1627
TspGWI	ACGGA	2 cut(s)	309, 1087
TspRI	CASTG	5 cut(s)	260, 320, 403, 1118, 1365
VpaK11BI	GGWCC	7 cut(s)	176, 296, 406, 425, 562, 1477, 1658
VspI	ATTAAT	1 cut(s)	591
XapI	RAATTY	1 cut(s)	486
XceI	RCATGY	1 cut(s)	392
XcmI	CCANNNNNNNNNTGG	1 cut(s)	282
XspI	CTAG	4 cut(s)	756, 993, 1161, 1191
ZrmI	AGTACT	1 cut(s)	1292
Zsp2I	ATGCAT	2 cut(s)	1416, 1593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.