Lignin degradation and detoxification of lignin-derived products
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Cu-oxidase_3 | PF07732 | 34 - 144 | 4.8e-41 | Multicopper oxidase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 112, 619 |
| AclWI | GGATC | 1 cut(s) | 445 |
| AcsI | RAATTY | 1 cut(s) | 532 |
| AdeI | CACNNNGTG | 1 cut(s) | 383 |
| AfaI | GTAC | 1 cut(s) | 326 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 183, 184, 214, 434 |
| AgsI | TTSAA | 2 cut(s) | 172, 203 |
| AjnI | CCWGG | 3 cut(s) | 157, 433, 586 |
| AluBI | AGCT | 1 cut(s) | 444 |
| AluI | AGCT | 1 cut(s) | 444 |
| AlwI | GGATC | 1 cut(s) | 445 |
| AoxI | GGCC | 1 cut(s) | 161 |
| ApeKI | GCWGC | 1 cut(s) | 56 |
| ApoI | RAATTY | 1 cut(s) | 532 |
| AspS9I | GGNCC | 3 cut(s) | 161, 281, 472 |
| AsuHPI | GGTGA | 2 cut(s) | 68, 500 |
| AvaII | GGWCC | 2 cut(s) | 281, 472 |
| BbsI | GAAGAC | 1 cut(s) | 93 |
| BbvCI | CCTCAGC | 1 cut(s) | 468 |
| BbvI | GCAGC | 1 cut(s) | 43 |
| BccI | CCATC | 2 cut(s) | 272, 381 |
| BciT130I | CCWGG | 3 cut(s) | 159, 435, 588 |
| BfaI | CTAG | 2 cut(s) | 485, 637 |
| BfmI | CTRYAG | 1 cut(s) | 12 |
| BisI | GCNGC | 1 cut(s) | 57 |
| BlsI | GCNGC | 1 cut(s) | 58 |
| Bme1390I | CCNGG | 3 cut(s) | 159, 435, 588 |
| Bme18I | GGWCC | 2 cut(s) | 281, 472 |
| BmgT120I | GGNCC | 3 cut(s) | 161, 281, 472 |
| BmiI | GGNNCC | 2 cut(s) | 412, 474 |
| BmrFI | CCNGG | 3 cut(s) | 159, 435, 588 |
| BmrI | ACTGGG | 1 cut(s) | 470 |
| BmsI | GCATC | 2 cut(s) | 43, 553 |
| BmuI | ACTGGG | 1 cut(s) | 470 |
| BpiI | GAAGAC | 1 cut(s) | 93 |
| Bpu10I | CCTNAGC | 1 cut(s) | 468 |
| BsaJI | CCNNGG | 3 cut(s) | 157, 158, 269 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 183, 184, 214, 434 |
| Bse1I | ACTGG | 2 cut(s) | 245, 476 |
| BseBI | CCWGG | 3 cut(s) | 159, 435, 588 |
| BseDI | CCNNGG | 3 cut(s) | 157, 158, 269 |
| BseGI | GGATG | 2 cut(s) | 283, 392 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 183, 184, 214, 434 |
| BseMII | CTCAG | 2 cut(s) | 459, 573 |
| BseNI | ACTGG | 2 cut(s) | 245, 476 |
| BseRI | GAGGAG | 1 cut(s) | 558 |
| BseXI | GCAGC | 1 cut(s) | 43 |
| BshFI | GGCC | 1 cut(s) | 163 |
| BslFI | GGGAC | 1 cut(s) | 458 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 183, 184, 214, 434 |
| BsmFI | GGGAC | 1 cut(s) | 458 |
| BsnI | GGCC | 1 cut(s) | 163 |
| Bsp143I | GATC | 1 cut(s) | 437 |
| BspANI | GGCC | 1 cut(s) | 163 |
| BspCNI | CTCAG | 2 cut(s) | 460, 572 |
| BspLI | GGNNCC | 2 cut(s) | 412, 474 |
| BspPI | GGATC | 1 cut(s) | 445 |
| BsrI | ACTGG | 2 cut(s) | 245, 476 |
| BssECI | CCNNGG | 3 cut(s) | 157, 158, 269 |
| BssMI | GATC | 1 cut(s) | 437 |
| BssNAI | GTATAC | 1 cut(s) | 620 |
| BssT1I | CCWWGG | 1 cut(s) | 269 |
| Bst1107I | GTATAC | 1 cut(s) | 620 |
| Bst2UI | CCWGG | 3 cut(s) | 159, 435, 588 |
| Bst4CI | ACNGT | 2 cut(s) | 142, 403 |
| Bst6I | CTCTTC | 2 cut(s) | 240, 494 |
| BstC8I | GCNNGC | 1 cut(s) | 375 |
| BstDEI | CTNAG | 2 cut(s) | 468, 559 |
| BstF5I | GGATG | 2 cut(s) | 283, 392 |
| BstKTI | GATC | 1 cut(s) | 440 |
| BstMBI | GATC | 1 cut(s) | 437 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 32 |
| BstNI | CCWGG | 3 cut(s) | 159, 435, 588 |
| BstNSI | RCATGY | 1 cut(s) | 377 |
| BstSCI | CCNGG | 3 cut(s) | 157, 433, 586 |
| BstSFI | CTRYAG | 1 cut(s) | 12 |
| BstV1I | GCAGC | 1 cut(s) | 43 |
| BstV2I | GAAGAC | 1 cut(s) | 93 |
| BstZ17I | GTATAC | 1 cut(s) | 620 |
| BsuRI | GGCC | 1 cut(s) | 163 |
| BtsCI | GGATG | 2 cut(s) | 283, 392 |
| BtsIMutI | CAGTG | 1 cut(s) | 238 |
| Cac8I | GCNNGC | 1 cut(s) | 375 |
| Cfr13I | GGNCC | 3 cut(s) | 161, 281, 472 |
| Csp6I | GTAC | 1 cut(s) | 325 |
| CviAII | CATG | 4 cut(s) | 374, 407, 511, 603 |
| CviJI | RGCY | 6 cut(s) | 163, 176, 313, 413, 444, 591 |
| CviKI_1 | RGCY | 6 cut(s) | 163, 176, 313, 413, 444, 591 |
| CviQI | GTAC | 1 cut(s) | 325 |
| DdeI | CTNAG | 2 cut(s) | 468, 559 |
| DpnI | GATC | 1 cut(s) | 439 |
| DpnII | GATC | 1 cut(s) | 437 |
| DraIII | CACNNNGTG | 1 cut(s) | 383 |
| Eam1104I | CTCTTC | 2 cut(s) | 240, 494 |
| EarI | CTCTTC | 2 cut(s) | 240, 494 |
| Eco130I | CCWWGG | 1 cut(s) | 269 |
| Eco47I | GGWCC | 2 cut(s) | 281, 472 |
| EcoO109I | RGGNCCY | 1 cut(s) | 472 |
| EcoRII | CCWGG | 3 cut(s) | 157, 433, 586 |
| EcoT14I | CCWWGG | 1 cut(s) | 269 |
| ErhI | CCWWGG | 1 cut(s) | 269 |
| FaeI | CATG | 4 cut(s) | 377, 410, 514, 606 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 119, 151, 253, 285, 433, 465 |
| FaqI | GGGAC | 1 cut(s) | 458 |
| FatI | CATG | 4 cut(s) | 373, 406, 510, 602 |
| FblI | GTMKAC | 2 cut(s) | 112, 619 |
| Fnu4HI | GCNGC | 1 cut(s) | 57 |
| FokI | GGATG | 2 cut(s) | 290, 399 |
| Fsp4HI | GCNGC | 1 cut(s) | 57 |
| FspBI | CTAG | 2 cut(s) | 485, 637 |
| GluI | GCNGC | 1 cut(s) | 57 |
| HaeIII | GGCC | 1 cut(s) | 163 |
| Hin1II | CATG | 4 cut(s) | 377, 410, 514, 606 |
| HincII | GTYRAC | 2 cut(s) | 7, 113 |
| HindII | GTYRAC | 2 cut(s) | 7, 113 |
| HinfI | GANTC | 2 cut(s) | 153, 630 |
| HpaI | GTTAAC | 1 cut(s) | 7 |
| HphI | GGTGA | 2 cut(s) | 68, 500 |
| Hpy166II | GTNNAC | 5 cut(s) | 7, 94, 113, 327, 620 |
| Hpy188I | TCNGA | 3 cut(s) | 277, 456, 562 |
| Hpy188III | TCNNGA | 3 cut(s) | 50, 136, 627 |
| Hpy8I | GTNNAC | 5 cut(s) | 7, 94, 113, 327, 620 |
| HpyAV | CCTTC | 1 cut(s) | 350 |
| HpyCH4III | ACNGT | 2 cut(s) | 142, 403 |
| HpyCH4V | TGCA | 3 cut(s) | 59, 377, 530 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 32 |
| HpyF3I | CTNAG | 2 cut(s) | 468, 559 |
| Hsp92II | CATG | 4 cut(s) | 377, 410, 514, 606 |
| KspAI | GTTAAC | 1 cut(s) | 7 |
| Kzo9I | GATC | 1 cut(s) | 437 |
| LmnI | GCTCC | 2 cut(s) | 410, 611 |
| Lsp1109I | GCAGC | 1 cut(s) | 43 |
| LweI | GCATC | 2 cut(s) | 43, 553 |
| MaeI | CTAG | 2 cut(s) | 485, 637 |
| MaeIII | GTNAC | 1 cut(s) | 292 |
| MalI | GATC | 1 cut(s) | 439 |
| MboI | GATC | 1 cut(s) | 437 |
| MboII | GAAGA | 4 cut(s) | 93, 227, 365, 511 |
| MluCI | AATT | 2 cut(s) | 336, 532 |
| MlyI | GAGTC | 1 cut(s) | 624 |
| MmeI | TCCRAC | 1 cut(s) | 255 |
| MnlI | CCTC | 3 cut(s) | 176, 463, 536 |
| MseI | TTAA | 3 cut(s) | 6, 345, 536 |
| MspR9I | CCNGG | 3 cut(s) | 159, 435, 588 |
| MvaI | CCWGG | 3 cut(s) | 159, 435, 588 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 32 |
| NdeII | GATC | 1 cut(s) | 437 |
| NlaIII | CATG | 4 cut(s) | 377, 410, 514, 606 |
| NlaIV | GGNNCC | 2 cut(s) | 412, 474 |
| NmuCI | GTSAC | 1 cut(s) | 292 |
| NspI | RCATGY | 1 cut(s) | 377 |
| PaeI | GCATGC | 1 cut(s) | 377 |
| PasI | CCCWGGG | 1 cut(s) | 158 |
| PfeI | GAWTC | 1 cut(s) | 153 |
| PkrI | GCNGC | 1 cut(s) | 58 |
| PleI | GAGTC | 1 cut(s) | 624 |
| PpsI | GAGTC | 1 cut(s) | 624 |
| PpuMI | RGGWCCY | 1 cut(s) | 472 |
| Psp5II | RGGWCCY | 1 cut(s) | 472 |
| Psp6I | CCWGG | 3 cut(s) | 157, 433, 586 |
| PspGI | CCWGG | 3 cut(s) | 157, 433, 586 |
| PspN4I | GGNNCC | 2 cut(s) | 412, 474 |
| PspPI | GGNCC | 3 cut(s) | 161, 281, 472 |
| PspPPI | RGGWCCY | 1 cut(s) | 472 |
| RsaI | GTAC | 1 cut(s) | 326 |
| RsaNI | GTAC | 1 cut(s) | 325 |
| SalI | GTCGAC | 1 cut(s) | 111 |
| SaqAI | TTAA | 3 cut(s) | 6, 345, 536 |
| SatI | GCNGC | 1 cut(s) | 57 |
| Sau3AI | GATC | 1 cut(s) | 437 |
| Sau96I | GGNCC | 3 cut(s) | 161, 281, 472 |
| SchI | GAGTC | 1 cut(s) | 624 |
| ScrFI | CCNGG | 3 cut(s) | 159, 435, 588 |
| SetI | ASST | 7 cut(s) | 436, 446, 463, 474, 490, 553, 619 |
| SfaNI | GCATC | 2 cut(s) | 43, 553 |
| SfcI | CTRYAG | 1 cut(s) | 12 |
| SinI | GGWCC | 2 cut(s) | 281, 472 |
| SphI | GCATGC | 1 cut(s) | 377 |
| Sse9I | AATT | 2 cut(s) | 336, 532 |
| SspMI | CTAG | 2 cut(s) | 485, 637 |
| StyD4I | CCNGG | 3 cut(s) | 157, 433, 586 |
| StyI | CCWWGG | 1 cut(s) | 269 |
| TaaI | ACNGT | 2 cut(s) | 142, 403 |
| TaqI | TCGA | 2 cut(s) | 112, 633 |
| TasI | AATT | 2 cut(s) | 336, 532 |
| TatI | WGTACW | 1 cut(s) | 324 |
| TfiI | GAWTC | 1 cut(s) | 153 |
| Tru1I | TTAA | 3 cut(s) | 6, 345, 536 |
| Tru9I | TTAA | 3 cut(s) | 6, 345, 536 |
| TscAI | CASTG | 1 cut(s) | 245 |
| TseFI | GTSAC | 1 cut(s) | 292 |
| TseI | GCWGC | 1 cut(s) | 56 |
| Tsp45I | GTSAC | 1 cut(s) | 292 |
| TspDTI | ATGAA | 1 cut(s) | 395 |
| TspGWI | ACGGA | 1 cut(s) | 261 |
| TspRI | CASTG | 1 cut(s) | 245 |
| VpaK11BI | GGWCC | 2 cut(s) | 281, 472 |
| XapI | RAATTY | 1 cut(s) | 532 |
| XceI | RCATGY | 1 cut(s) | 377 |
| XmiI | GTMKAC | 2 cut(s) | 112, 619 |
| XspI | CTAG | 2 cut(s) | 485, 637 |