Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000359

Physical Location & Seq

Genomic Coordinates Reverse (-)

30835960 .. 30855515

Gene Structure 19556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG278700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2271 bp

ATGGGTGAATGGGCGCCGGCACCGAGTTTTGGCTTTTCAATCGGTGGTCAAGGTCTTGTCCCTCTTGCAAGCTATGATCTAATACGGTTCTGCACTTCACAGTACAAGGATGGTGGTGGCTATGGTGTTCTCGCTAGCGGCAGCCTTGTTGGCTCCAGCGGCAGTAGTGGGTTGGAGGCCACAGGATTGGTGGTTGGCACATTATCCAACGCTCAAGGAAACGACGAACAAAGCGTCGCCACCACGAGCAATGCCAGCTCCAAGTTCGGGGTTTCAAGCCGGTCTGGCTTGCCGTATCAGAAGCTGGGCTCGCCGGAGCTGACGCCGCTTCCTCCACTTCCCAAGGACAATTTCATACGACGGAGCTACAAGCATGAACTGGGTTCCGACGATGATGAAGGGGAAGACGAGTTCTTTTCTCCGAGAGGCTCTTCTGCGAGTCCGAAAAACGTCGCCGGAGCAAGCTCAGATAGAGCACTCAAGGCTGTAGAAGGCAACAACTTTGGAAGCAGGAGCTTCAATTCAAGAACTGCATCCTACCCATGTTCAAAATCTGCTTCTCCAATGAAGGTATCCAGAATTAGCCTGCATCTGCAACTTTTGGGGTTGTTATTGGCTTTGAATGGCTTACTTCATTGCCGAGCTTGGCCAGCTCGTTACACTTTTGTGGTGGAAAACACTCCATACAAGAGACTCTGCAGCACAAAGAACATCTTGACTGTAAATGGCCAGTTTCCGGGACCGACTTTGTATGCTCACAAAGGAGACACTATCATCGTCGATGTCATTAACAAAGGCAATCGTAACATTACTCTCCACTGGCATGGTGTTTCGCAACCAAGATATCCATGGTCGGACGGACCAGAGTATATCACACAGTGCCCAATTCAACCAGGGGCCAAGTTCACCCAAAAGATCATTTTCTCGGAGGAGGAAGGCACCCTTTGGTGGCATGCTCATAGTGAGTGGGATCGTGCCACAGTCCATGGTCCCATCATCATATACCCCAACAAGAACAACAAATACCCTTTTGCCAAGCCTCATGCAGAAATTCCAATCATATTAGGAGAGTGGTGGAAGATGGATATAGGGAAGCTTTATACACAAACTATTCAATCCGGAGGGGACCCTAATACTTCCGACGCTTACCTCATCAATGGTCAACCTGGCGATCTGTATCCATGCTCTAAATCAGAGACGTTCAAGTTGATGGTTGATTATGGCAAAACCTACCTATTGAGACTAATCAACTCCGGTGTGCAAGAGATTCTGTTTTTCGCCATCGCCAATCACAAAGTTACAGTTGTAGGGACAGATGCTAGCTACACCAAGCCTTTCACAACCGATTATGTCACCATCTCACCTGGTCAAACCATTGACCTTTTGCTCCATGCTAATCAGAGGCCTAACCACTATTACATGGCCGCTACAGCCTACGTTGGTGGCGCTGTTCCTTATGATGACAACACCACCACAGCCCTACTACAATACACGAATCGGGGTTACACCCCTTCTTCAACCCCTTTGTTTCCTAATCTTCCTGCTCACAATGACACTAGTGCATCAGTTCATTTTAGTCGTAGTCTCAGGAGCTTGGCTGATAAAAACCACCCCATTGACGTTCCACTAAAAATTACAACTCCCTTGTTTTATACCGTCTCCGTCAACACGTTCCAGTGCCCCAAAAATTCATGCGCCGGGCCTAATGGGACGCGTCTGGCTGCTAGTATAAACAACATTAGCTTCCATAGCCCTAGCATTGACATACTACAAGCTTACTATTACCATGTTAACGGGGTATTTGGAACTCGGTTTCCAAGTTCCCCGCCTTTGCTGTTTAACTTTACAGCGCAGTACTTGCCGCAGTACCTTCAGACCCCGAAACAAAAGACAGAGGTGAAGGTACTGGAGTACAACGCGACAGTGGAGCTTGTGTTGCAGGGGACTAATTTGGTGGCAGGGGATGACCATCCAATGCATCTTCATGGTTACAGTTTCTATGTGGTTGGATTGGGGCTTGGGAACTTTGACAAGGATAAGGACCCTTTGAAATACAATCTTGTTGATCCTCCTCTTCAAAACACCATTGCTGTCCCTGTAAATGGGTGGGCTACCATCAGATTCAAGGCTGATAATCCTGGAGTTTGGTTTATGCATTGCCATCTGGATAGGCATATGTCATGGGGGATGGATACGACATTCATAGTGAAAAATGGAAAGGGACCTGAAGCTCAAATCTTACCTCCACCACCAGATATGCCACCTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0010023 GO:0010035 GO:0010038 GO:0016491 GO:0016722 GO:0017144 GO:0018130 GO:0018958 GO:0019438 GO:0019748 GO:0042221 GO:0043167 GO:0043169 GO:0044237 GO:0044249 GO:0044550 GO:0046189 GO:0046483 GO:0046688 GO:0046872 GO:0046914 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

756

Amino Acids

82.92

Weight (kDa)

7.64

Isoelectric Point (pI)

40.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase_3	PF07732	224 - 338	2.8e-39	Multicopper oxidase
Cu-oxidase	PF00394	351 - 499	3.5e-39	Multicopper oxidase
Cu-oxidase_2	PF07731	605 - 739	1.8e-41	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48100
fragaria_vesca	FvH4_1g24380 FvH4_2g05800 FvH4_5g30730
malus_domestica	MD01G1234900.v1.1 MD01G1235100.v1.1 MD01G1235200.v1.1 MD07G1307400.v1.1 MD07G1308000.v1.1 MD10G1042300.v1.1 MD10G1042400.v1.1 MD10G1042500.v1.1 MD10G1042700.v1.1
prunus_persica	Prupe.2G325200_v2.0.a1 Prupe.6G242000_v2.0.a1 Prupe.8G046800_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1
pyrus_communis	pycom01g24320 pycom01g24330 pycom07g28020 pycom10g02950 pycom17g03690
rosa_chinensis	RchiOBHm_Chr1g0384031 RchiOBHm_Chr2g0120941 RchiOBHm_Chr2g0120971 RchiOBHm_Chr2g0121051 RchiOBHm_Chr2g0121181 RchiOBHm_Chr2g0121211 RchiOBHm_Chr3g0473931 RchiOBHm_Chr3g0473941 RchiOBHm_Chr6g0257941 RchiOBHm_Chr6g0284781
rosa_laevigata	RLG00000008541 RLG00000014737 RLG00000018604 RLG00000018607 RLG00000018608 RLG00000018610 RLG00000018611 RLG00000018613 RLG00000023967 RLG00000023970 RLG00000026078 RLG00000035183
rosa_multiflora	Rmu_sc0000079.1_g000043 Rmu_sc0000079.1_g000062 Rmu_sc0000079.1_g000069 Rmu_sc0000621.1_g000019 Rmu_sc0000621.1_g000025 Rmu_sc0000621.1_g000041 Rmu_sc0000652.1_g000018 Rmu_sc0002414.1_g000030 Rmu_sc0002414.1_g000033 Rmu_sc0002843.1_g000016 Rmu_sc0005137.1_g000035 Rmu_sc0005139.1_g000021
rosa_roxburghii	Rroxscaffold_2G00122530 Rroxscaffold_2G00122570 Rroxscaffold_2G00122580 Rroxscaffold_2G00122650 Rroxscaffold_4G00277080 Rroxscaffold_6G00407610 Rroxscaffold_6G00407620 Rroxscaffold_7G00209050
rosa_rugosa	Rorug01G0444300 Rorug02G0232700 Rorug02G0232700 Rorug02G0232900 Rorug03G0137100 Rorug05G0565600 Rorug05G0566500
rosa_samantha	Rh1BG427300 Rh1CG440100 Rh2CG278100 Rh2CG278200 Rh2CG278700 Rh2CG278800 Rh2CG279100 Rh2DG314200 Rh2DG314300 Rh2DG314600 Rh3AG187200 Rh3DG211700 Rh3DG211800 Rh5AG356600 Rh6BG078000 Rh6BG078700 Rh6CG073300 Rh6DG070300 Rh6DG190200 Rh6DG274700 Rh7BG365900
rosa_wichuraiana	Rw0G018400 Rw1G040270 Rw2G023160 Rw2G023170 Rw2G023190 Rw2G023200 Rw2G023220 Rw2G023230 Rw3G017140 Rw3G017150 Rw4G012840 Rw6G007580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	13, 19, 938
AccII	CGCG	2 cut(s)	1714, 1919
AccIII	TCCGGA	1 cut(s)	1118
AciI	CCGC	6 cut(s)	138, 159, 326, 1425, 1826, 1862
AclWI	GGATC	2 cut(s)	978, 2060
AcoI	YGGCCR	3 cut(s)	647, 727, 1422
AcsI	RAATTY	2 cut(s)	1050, 1687
AcuI	CTGAAG	2 cut(s)	1856, 2247
AcyI	GRCGYC	2 cut(s)	14, 323
AdeI	CACNNNGTG	1 cut(s)	879
AfaI	GTAC	5 cut(s)	104, 1856, 1868, 1905, 1913
AfiI	CCNNNNNNNGG	5 cut(s)	29, 267, 736, 948, 2102
AflIII	ACRYGT	2 cut(s)	1668, 1712
AhlI	ACTAGT	1 cut(s)	1556
AjnI	CCWGG	4 cut(s)	892, 1165, 1363, 2137
AjuI	GAANNNNNNNTTGG	2 cut(s)	335, 367
AleI	CACNNNNGTG	1 cut(s)	665
AloI	GAACNNNNNNTCC	4 cut(s)	395, 427, 1798, 1830
Alw21I	GWGCWC	1 cut(s)	478
Alw26I	GTCTC	6 cut(s)	685, 759, 1190, 1234, 1589, 1663
AlwI	GGATC	2 cut(s)	978, 2060
AlwNI	CAGNNNCTG	1 cut(s)	304
Aor13HI	TCCGGA	1 cut(s)	1118
AoxI	GGCC	7 cut(s)	177, 647, 727, 897, 1403, 1422, 1700
ApeKI	GCWGC	3 cut(s)	141, 699, 1721
ApoI	RAATTY	2 cut(s)	1050, 1687
ArsI	GACNNNNNNTTYG	2 cut(s)	219, 251
AspLEI	GCGC	4 cut(s)	16, 1448, 1697, 1852
AspS9I	GGNCC	8 cut(s)	740, 860, 897, 989, 1126, 1700, 2041, 2222
AsuC2I	CCSGG	2 cut(s)	738, 1699
AsuHPI	GGTGA	5 cut(s)	17, 898, 1345, 1353, 1909
AsuNHI	GCTAGC	2 cut(s)	134, 1319
AvaII	GGWCC	6 cut(s)	740, 860, 989, 1126, 2041, 2222
BaeGI	GKGCMC	2 cut(s)	884, 1682
BaeI	ACNNNNGTAYC	2 cut(s)	1895, 1928
BalI	TGGCCA	2 cut(s)	649, 729
BanI	GGYRCC	3 cut(s)	13, 19, 938
BanII	GRGCYC	1 cut(s)	311
BauI	CACGAG	1 cut(s)	244
BbsI	GAAGAC	1 cut(s)	411
Bbv12I	GWGCWC	1 cut(s)	478
BbvI	GCAGC	3 cut(s)	153, 711, 1708
BceAI	ACGGC	1 cut(s)	277
BciT130I	CCWGG	4 cut(s)	894, 1167, 1365, 2139
BciVI	GTATCC	3 cut(s)	583, 1188, 2185
BcnI	CCSGG	2 cut(s)	738, 1699
BcoDI	GTCTC	6 cut(s)	685, 759, 1190, 1234, 1589, 1663
BcuI	ACTAGT	1 cut(s)	1556
BfaI	CTAG	5 cut(s)	135, 1320, 1557, 1725, 1755
BfmI	CTRYAG	3 cut(s)	486, 697, 1428
BfoI	RGCGCY	2 cut(s)	17, 1449
BfuI	GTATCC	3 cut(s)	583, 1188, 2185
BglI	GCCNNNNNGGC	2 cut(s)	150, 285
BisI	GCNGC	8 cut(s)	139, 142, 160, 326, 700, 1425, 1722, 1862
BlsI	GCNGC	8 cut(s)	140, 143, 161, 327, 701, 1426, 1723, 1863
BmcAI	AGTACT	1 cut(s)	1856
Bme1390I	CCNGG	6 cut(s)	738, 894, 1167, 1365, 1699, 2139
Bme18I	GGWCC	6 cut(s)	740, 860, 989, 1126, 2041, 2222
BmgT120I	GGNCC	8 cut(s)	740, 860, 897, 989, 1126, 1700, 2041, 2222
BmrFI	CCNGG	6 cut(s)	738, 894, 1167, 1365, 1699, 2139
BmrI	ACTGGG	1 cut(s)	389
BmsI	GCATC	5 cut(s)	542, 598, 1306, 1571, 1987
BmtI	GCTAGC	2 cut(s)	138, 1323
BmuI	ACTGGG	1 cut(s)	389
BpiI	GAAGAC	1 cut(s)	411
BpmI	CTGGAG	3 cut(s)	139, 1928, 2160
BpuEI	CTTGAG	2 cut(s)	198, 464
BpuMI	CCSGG	2 cut(s)	738, 1699
BsaBI	GATNNNNATC	2 cut(s)	1176, 1968
BsaHI	GRCGYC	2 cut(s)	14, 323
BsaJI	CCNNGG	4 cut(s)	342, 848, 893, 985
BsaWI	WCCGGW	2 cut(s)	1118, 1253
BsaXI	ACNNNNNCTCC	2 cut(s)	1919, 1949
Bsc4I	CCNNNNNNNGG	5 cut(s)	29, 267, 736, 948, 2102
Bse118I	RCCGGY	2 cut(s)	16, 279
Bse1I	ACTGG	5 cut(s)	384, 730, 824, 1675, 1911
Bse3DI	GCAATG	4 cut(s)	256, 634, 2085, 2155
Bse8I	GATNNNNATC	2 cut(s)	1176, 1968
BseAI	TCCGGA	1 cut(s)	1118
BseBI	CCWGG	4 cut(s)	894, 1167, 1365, 2139
BseDI	CCNNGG	4 cut(s)	342, 848, 893, 985
BseGI	GGATG	5 cut(s)	115, 533, 1969, 1969, 2193
BseJI	GATNNNNATC	2 cut(s)	1176, 1968
BseLI	CCNNNNNNNGG	5 cut(s)	29, 267, 736, 948, 2102
BseMI	GCAATG	4 cut(s)	256, 634, 2085, 2155
BseMII	CTCAG	2 cut(s)	480, 1600
BseNI	ACTGG	5 cut(s)	384, 730, 824, 1675, 1911
BseRI	GAGGAG	2 cut(s)	944, 2061
BseSI	GKGCMC	2 cut(s)	884, 1682
BseXI	GCAGC	3 cut(s)	153, 711, 1708
BseYI	CCCAGC	1 cut(s)	304
BsgI	GTGCAG	1 cut(s)	76
Bsh1236I	CGCG	2 cut(s)	1714, 1919
BshFI	GGCC	7 cut(s)	179, 649, 729, 899, 1405, 1424, 1702
BshNI	GGYRCC	3 cut(s)	13, 19, 938
BsiHKAI	GWGCWC	1 cut(s)	478
BsiSI	CCGG	8 cut(s)	17, 280, 314, 456, 737, 1119, 1254, 1698
BslFI	GGGAC	9 cut(s)	44, 753, 975, 1139, 1324, 1723, 1957, 2078, 2235
BslI	CCNNNNNNNGG	5 cut(s)	29, 267, 736, 948, 2102
BsmAI	GTCTC	6 cut(s)	685, 759, 1190, 1234, 1589, 1663
BsmBI	CGTCTC	2 cut(s)	1190, 1663
BsmFI	GGGAC	9 cut(s)	44, 753, 975, 1139, 1324, 1723, 1957, 2078, 2235
BsnI	GGCC	7 cut(s)	179, 649, 729, 899, 1405, 1424, 1702
Bsp1286I	GDGCHC	4 cut(s)	311, 478, 884, 1682
Bsp13I	TCCGGA	1 cut(s)	1118
Bsp143I	GATC	5 cut(s)	76, 915, 970, 1171, 2065
Bsp19I	CCATGG	2 cut(s)	848, 985
BspACI	CCGC	6 cut(s)	138, 159, 326, 1425, 1826, 1862
BspANI	GGCC	7 cut(s)	179, 649, 729, 899, 1405, 1424, 1702
BspCNI	CTCAG	2 cut(s)	479, 1599
BspEI	TCCGGA	1 cut(s)	1118
BspFNI	CGCG	2 cut(s)	1714, 1919
BspMAI	CTGCAG	1 cut(s)	701
BspOI	GCTAGC	2 cut(s)	138, 1323
BspPI	GGATC	2 cut(s)	978, 2060
BspQI	GCTCTTC	1 cut(s)	436
BspT107I	GGYRCC	3 cut(s)	13, 19, 938
BsrDI	GCAATG	4 cut(s)	256, 634, 2085, 2155
BsrFI	RCCGGY	2 cut(s)	16, 279
BsrI	ACTGG	5 cut(s)	384, 730, 824, 1675, 1911
BssAI	RCCGGY	2 cut(s)	16, 279
BssECI	CCNNGG	4 cut(s)	342, 848, 893, 985
BssMI	GATC	5 cut(s)	76, 915, 970, 1171, 2065
BssNI	GRCGYC	2 cut(s)	14, 323
BssSI	CACGAG	1 cut(s)	244
BssT1I	CCWWGG	3 cut(s)	342, 848, 985
Bst2BI	CACGAG	1 cut(s)	244
Bst2UI	CCWGG	4 cut(s)	894, 1167, 1365, 2139
Bst4CI	ACNGT	9 cut(s)	87, 102, 721, 879, 982, 1303, 1657, 1924, 1994
Bst6I	CTCTTC	2 cut(s)	436, 2079
BstACI	GRCGYC	2 cut(s)	14, 323
BstAPI	GCANNNNNTGC	1 cut(s)	1858
BstDEI	CTNAG	2 cut(s)	466, 1586
BstDSI	CCRYGG	2 cut(s)	848, 985
BstF5I	GGATG	5 cut(s)	115, 533, 1969, 1969, 2193
BstFNI	CGCG	2 cut(s)	1714, 1919
BstH2I	RGCGCY	2 cut(s)	17, 1449
BstHHI	GCGC	4 cut(s)	16, 1448, 1697, 1852
BstKTI	GATC	5 cut(s)	79, 918, 973, 1174, 2068
BstMAI	GTCTC	6 cut(s)	685, 759, 1190, 1234, 1589, 1663
BstMBI	GATC	5 cut(s)	76, 915, 970, 1171, 2065
BstNI	CCWGG	4 cut(s)	894, 1167, 1365, 2139
BstNSI	RCATGY	1 cut(s)	956
BstSCI	CCNGG	6 cut(s)	736, 892, 1165, 1363, 1697, 2137
BstSFI	CTRYAG	3 cut(s)	486, 697, 1428
BstSLI	GKGCMC	2 cut(s)	884, 1682
BstUI	CGCG	2 cut(s)	1714, 1919
BstV1I	GCAGC	3 cut(s)	153, 711, 1708
BstV2I	GAAGAC	1 cut(s)	411
BstXI	CCANNNNNNTGG	2 cut(s)	187, 824
BsuI	GTATCC	3 cut(s)	583, 1188, 2185
BsuRI	GGCC	7 cut(s)	179, 649, 729, 899, 1405, 1424, 1702
BtgI	CCRYGG	2 cut(s)	848, 985
BtgZI	GCGATG	1 cut(s)	1267
BtsCI	GGATG	5 cut(s)	115, 533, 1969, 1969, 2193
BtsIMutI	CAGTG	4 cut(s)	817, 884, 1682, 1929
CaiI	CAGNNNCTG	1 cut(s)	304
CfoI	GCGC	4 cut(s)	16, 1448, 1697, 1852
Cfr10I	RCCGGY	2 cut(s)	16, 279
Cfr13I	GGNCC	8 cut(s)	740, 860, 897, 989, 1126, 1700, 2041, 2222
CseI	GACGC	5 cut(s)	223, 331, 1151, 1703, 1720
CsiI	ACCWGGT	1 cut(s)	1363
Csp6I	GTAC	5 cut(s)	103, 1855, 1867, 1904, 1912
CspCI	CAANNNNNGTGG	2 cut(s)	94, 129
CviQI	GTAC	5 cut(s)	103, 1855, 1867, 1904, 1912
DdeI	CTNAG	2 cut(s)	466, 1586
DinI	GGCGCC	1 cut(s)	15
DpnI	GATC	5 cut(s)	78, 917, 972, 1173, 2067
DpnII	GATC	5 cut(s)	76, 915, 970, 1171, 2065
DraIII	CACNNNGTG	1 cut(s)	879
EaeI	YGGCCR	3 cut(s)	647, 727, 1422
Eam1104I	CTCTTC	2 cut(s)	436, 2079
EarI	CTCTTC	2 cut(s)	436, 2079
Eco130I	CCWWGG	3 cut(s)	342, 848, 985
Eco147I	AGGCCT	1 cut(s)	1405
Eco24I	GRGCYC	1 cut(s)	311
Eco32I	GATATC	1 cut(s)	845
Eco47I	GGWCC	6 cut(s)	740, 860, 989, 1126, 2041, 2222
Eco57I	CTGAAG	2 cut(s)	1856, 2247
EcoO109I	RGGNCCY	3 cut(s)	1126, 2041, 2222
EcoRII	CCWGG	4 cut(s)	892, 1165, 1363, 2137
EcoRV	GATATC	1 cut(s)	845
EcoT14I	CCWWGG	3 cut(s)	342, 848, 985
EcoT22I	ATGCAT	2 cut(s)	1980, 2157
EcoT38I	GRGCYC	1 cut(s)	311
EgeI	GGCGCC	1 cut(s)	15
EheI	GGCGCC	1 cut(s)	15
ErhI	CCWWGG	3 cut(s)	342, 848, 985
Esp3I	CGTCTC	2 cut(s)	1190, 1663
FalI	AAGNNNNNCTT	4 cut(s)	698, 730, 927, 959
FaqI	GGGAC	9 cut(s)	44, 753, 975, 1139, 1324, 1723, 1957, 2078, 2235
FauI	CCCGC	1 cut(s)	1833
FauNDI	CATATG	1 cut(s)	2175
Fnu4HI	GCNGC	8 cut(s)	139, 142, 160, 326, 700, 1425, 1722, 1862
FokI	GGATG	5 cut(s)	122, 520, 1956, 1976, 2200
FriOI	GRGCYC	1 cut(s)	311
Fsp4HI	GCNGC	8 cut(s)	139, 142, 160, 326, 700, 1425, 1722, 1862
FspBI	CTAG	5 cut(s)	135, 1320, 1557, 1725, 1755
GlaI	GCGC	4 cut(s)	15, 1447, 1696, 1851
GluI	GCNGC	8 cut(s)	139, 142, 160, 326, 700, 1425, 1722, 1862
GsaI	CCCAGC	1 cut(s)	308
GsuI	CTGGAG	3 cut(s)	139, 1928, 2160
HaeII	RGCGCY	2 cut(s)	17, 1449
HaeIII	GGCC	7 cut(s)	179, 649, 729, 899, 1405, 1424, 1702
HapII	CCGG	8 cut(s)	17, 280, 314, 456, 737, 1119, 1254, 1698
HgaI	GACGC	5 cut(s)	223, 331, 1151, 1703, 1720
HhaI	GCGC	4 cut(s)	16, 1448, 1697, 1852
Hin1I	GRCGYC	2 cut(s)	14, 323
Hin6I	GCGC	4 cut(s)	14, 1446, 1695, 1850
HinP1I	GCGC	4 cut(s)	14, 1446, 1695, 1850
HincII	GTYRAC	3 cut(s)	1163, 1666, 1792
HindII	GTYRAC	3 cut(s)	1163, 1666, 1792
HindIII	AAGCTT	2 cut(s)	1094, 1773
HinfI	GANTC	5 cut(s)	439, 693, 1267, 1495, 2121
HpaI	GTTAAC	1 cut(s)	1792
HpaII	CCGG	8 cut(s)	17, 280, 314, 456, 737, 1119, 1254, 1698
HphI	GGTGA	5 cut(s)	17, 898, 1345, 1353, 1909
Hpy166II	GTNNAC	4 cut(s)	906, 1163, 1666, 1792
Hpy188III	TCNNGA	6 cut(s)	525, 576, 715, 1119, 1588, 2165
Hpy8I	GTNNAC	4 cut(s)	906, 1163, 1666, 1792
Hpy99I	CGWCG	7 cut(s)	227, 239, 363, 392, 455, 782, 1145
HpyAV	CCTTC	7 cut(s)	392, 485, 562, 929, 1521, 1880, 1894
HpyCH4III	ACNGT	9 cut(s)	87, 102, 721, 879, 982, 1303, 1657, 1924, 1994
HpyCH4IV	ACGT	5 cut(s)	450, 1199, 1437, 1620, 1670
HpyF3I	CTNAG	2 cut(s)	466, 1586
HpySE526I	ACGT	5 cut(s)	450, 1199, 1437, 1620, 1670
Hsp92I	GRCGYC	2 cut(s)	14, 323
HspAI	GCGC	4 cut(s)	14, 1446, 1695, 1850
KasI	GGCGCC	1 cut(s)	13
KflI	GGGWCCC	1 cut(s)	1126
Kpn2I	TCCGGA	1 cut(s)	1118
KroI	GCCGGC	1 cut(s)	16
KroNI	GCCGGC	1 cut(s)	18
KspAI	GTTAAC	1 cut(s)	1792
Kzo9I	GATC	5 cut(s)	76, 915, 970, 1171, 2065
LguI	GCTCTTC	1 cut(s)	436
LmnI	GCTCC	9 cut(s)	158, 263, 316, 363, 458, 513, 1392, 1590, 1927
Lsp1109I	GCAGC	3 cut(s)	153, 711, 1708
LweI	GCATC	5 cut(s)	542, 598, 1306, 1571, 1987
MabI	ACCWGGT	1 cut(s)	1363
MaeI	CTAG	5 cut(s)	135, 1320, 1557, 1725, 1755
MaeII	ACGT	5 cut(s)	450, 1199, 1437, 1620, 1670
MaeIII	GTNAC	6 cut(s)	656, 803, 1297, 1351, 1502, 1988
MalI	GATC	5 cut(s)	78, 917, 972, 1173, 2067
MboI	GATC	5 cut(s)	76, 915, 970, 1171, 2065
MboII	GAAGA	7 cut(s)	416, 423, 1090, 1506, 1529, 1973, 2066
MhlI	GDGCHC	4 cut(s)	311, 478, 884, 1682
MlsI	TGGCCA	2 cut(s)	649, 729
MluCI	AATT	8 cut(s)	349, 520, 579, 885, 1050, 1632, 1687, 1948
MluI	ACGCGT	1 cut(s)	1712
MluNI	TGGCCA	2 cut(s)	649, 729
Mly113I	GGCGCC	1 cut(s)	14
MlyI	GAGTC	2 cut(s)	448, 687
MmeI	TCCRAC	6 cut(s)	153, 231, 411, 834, 1164, 1987
Mox20I	TGGCCA	2 cut(s)	649, 729
Mph1103I	ATGCAT	2 cut(s)	1980, 2157
MroI	TCCGGA	1 cut(s)	1118
MroNI	GCCGGC	1 cut(s)	16
MscI	TGGCCA	2 cut(s)	649, 729
MseI	TTAA	3 cut(s)	789, 1791, 1839
MslI	CAYNNNNRTG	3 cut(s)	665, 822, 1983
Msp20I	TGGCCA	2 cut(s)	649, 729
MspA1I	CMGCKG	1 cut(s)	159
MspI	CCGG	8 cut(s)	17, 280, 314, 456, 737, 1119, 1254, 1698
MspR9I	CCNGG	6 cut(s)	738, 894, 1167, 1365, 1699, 2139
MvaI	CCWGG	4 cut(s)	894, 1167, 1365, 2139
MvnI	CGCG	2 cut(s)	1714, 1919
NaeI	GCCGGC	1 cut(s)	18
NarI	GGCGCC	1 cut(s)	14
NciI	CCSGG	2 cut(s)	738, 1699
NcoI	CCATGG	2 cut(s)	848, 985
NdeI	CATATG	1 cut(s)	2175
NdeII	GATC	5 cut(s)	76, 915, 970, 1171, 2065
NgoMIV	GCCGGC	1 cut(s)	16
NheI	GCTAGC	2 cut(s)	134, 1319
NmeAIII	GCCGAG	1 cut(s)	665
NmuCI	GTSAC	1 cut(s)	1351
NsiI	ATGCAT	2 cut(s)	1980, 2157
NspI	RCATGY	1 cut(s)	956
OliI	CACNNNNGTG	1 cut(s)	665
PaeI	GCATGC	1 cut(s)	956
PceI	AGGCCT	1 cut(s)	1405
PciSI	GCTCTTC	1 cut(s)	436
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PdiI	GCCGGC	1 cut(s)	18
PfeI	GAWTC	3 cut(s)	1267, 1495, 2121
PfoI	TCCNGGA	2 cut(s)	736, 2137
PkrI	GCNGC	8 cut(s)	140, 143, 161, 327, 701, 1426, 1723, 1863
PleI	GAGTC	2 cut(s)	447, 687
PluTI	GGCGCC	1 cut(s)	17
PpsI	GAGTC	2 cut(s)	447, 687
PpuMI	RGGWCCY	3 cut(s)	1126, 2041, 2222
Psp5II	RGGWCCY	3 cut(s)	1126, 2041, 2222
Psp6I	CCWGG	4 cut(s)	892, 1165, 1363, 2137
PspFI	CCCAGC	1 cut(s)	304
PspGI	CCWGG	4 cut(s)	892, 1165, 1363, 2137
PspPI	GGNCC	8 cut(s)	740, 860, 897, 989, 1126, 1700, 2041, 2222
PspPPI	RGGWCCY	3 cut(s)	1126, 2041, 2222
PsrI	GAACNNNNNNTAC	2 cut(s)	1007, 1039
PstI	CTGCAG	1 cut(s)	701
PstNI	CAGNNNCTG	1 cut(s)	304
RsaI	GTAC	5 cut(s)	104, 1856, 1868, 1905, 1913
RsaNI	GTAC	5 cut(s)	103, 1855, 1867, 1904, 1912
RseI	CAYNNNNRTG	3 cut(s)	665, 822, 1983
SapI	GCTCTTC	1 cut(s)	436
SaqAI	TTAA	3 cut(s)	789, 1791, 1839
SatI	GCNGC	8 cut(s)	139, 142, 160, 326, 700, 1425, 1722, 1862
Sau3AI	GATC	5 cut(s)	76, 915, 970, 1171, 2065
Sau96I	GGNCC	8 cut(s)	740, 860, 897, 989, 1126, 1700, 2041, 2222
ScaI	AGTACT	1 cut(s)	1856
SchI	GAGTC	2 cut(s)	448, 687
ScrFI	CCNGG	6 cut(s)	738, 894, 1167, 1365, 1699, 2139
SduI	GDGCHC	4 cut(s)	311, 478, 884, 1682
SexAI	ACCWGGT	1 cut(s)	1363
SfaNI	GCATC	5 cut(s)	542, 598, 1306, 1571, 1987
SfcI	CTRYAG	3 cut(s)	486, 697, 1428
SfoI	GGCGCC	1 cut(s)	15
SinI	GGWCC	6 cut(s)	740, 860, 989, 1126, 2041, 2222
SmiMI	CAYNNNNRTG	3 cut(s)	665, 822, 1983
SmlI	CTYRAG	2 cut(s)	213, 479
SmoI	CTYRAG	2 cut(s)	213, 479
SpeI	ACTAGT	1 cut(s)	1556
SphI	GCATGC	1 cut(s)	956
Sse9I	AATT	8 cut(s)	349, 520, 579, 885, 1050, 1632, 1687, 1948
SseBI	AGGCCT	1 cut(s)	1405
SsiI	CCGC	6 cut(s)	138, 159, 326, 1425, 1826, 1862
SspDI	GGCGCC	1 cut(s)	13
SspMI	CTAG	5 cut(s)	135, 1320, 1557, 1725, 1755
StuI	AGGCCT	1 cut(s)	1405
StyD4I	CCNGG	6 cut(s)	736, 892, 1165, 1363, 1697, 2137
StyI	CCWWGG	3 cut(s)	342, 848, 985
TaaI	ACNGT	9 cut(s)	87, 102, 721, 879, 982, 1303, 1657, 1924, 1994
TaiI	ACGT	5 cut(s)	453, 1202, 1440, 1623, 1673
TaqI	TCGA	1 cut(s)	780
TaqII	GACCGA	1 cut(s)	757
TasI	AATT	8 cut(s)	349, 520, 579, 885, 1050, 1632, 1687, 1948
TatI	WGTACW	3 cut(s)	102, 1854, 1911
TauI	GCSGC	5 cut(s)	141, 162, 328, 1427, 1864
TfiI	GAWTC	3 cut(s)	1267, 1495, 2121
Tru1I	TTAA	3 cut(s)	789, 1791, 1839
Tru9I	TTAA	3 cut(s)	789, 1791, 1839
TscAI	CASTG	4 cut(s)	824, 884, 1682, 1929
TseFI	GTSAC	1 cut(s)	1351
TseI	GCWGC	3 cut(s)	141, 699, 1721
Tsp45I	GTSAC	1 cut(s)	1351
TspDTI	ATGAA	9 cut(s)	343, 390, 411, 581, 623, 1559, 1680, 1973, 2191
TspGWI	ACGGA	3 cut(s)	376, 873, 1651
TspRI	CASTG	4 cut(s)	824, 884, 1682, 1929
VpaK11BI	GGWCC	6 cut(s)	740, 860, 989, 1126, 2041, 2222
XapI	RAATTY	2 cut(s)	1050, 1687
XceI	RCATGY	1 cut(s)	956
XcmI	CCANNNNNNNNNTGG	2 cut(s)	187, 846
XspI	CTAG	5 cut(s)	135, 1320, 1557, 1725, 1755
ZrmI	AGTACT	1 cut(s)	1856
Zsp2I	ATGCAT	2 cut(s)	1980, 2157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.