Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000359

Physical Location & Seq

Genomic Coordinates Reverse (-)

4742456 .. 4745293

Gene Structure 2838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g05800.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGATGTCTTGTTGGTCACGAACCAACAACGTCCCGGTCTCTACTACATGGCTGCTAGGGCTTACAACGGTAACCCAGTAGTTGGTTTCGACACCACCACCACCACAGCAATAGTTGAGTACAACAATGGAAATGGGAACAAGAATGATACTCCATTATTTCCCTACCTTCCTGGTTTCAATGACACAGCAAGAGCCTTTGGTTTTTTCAGCAGACTCAAGAGCCTACCAGTTGATTTCAAGGAGCCTGTCCCGAAAACCATTGACCGTCGCATAATTTCAACAATTGCAATCAACACATTCCCTTGCCAGGGAAACCAAACATGTCAAGGACCCAACGGGACTCGTTTAGCTGCCAGCATGAACAACATAAGCTTTGTGGAGCCAAATACAGTAGACATACTTGTAGCTTACTACTACTACATCAATGGAGTTTTCAAAAAAGGTTTTCCGAATTATCCGCCGTACGCGTATAACTTCACTGGTCAGAACCTGCCTCTGGTTTTGCAAATACCAAAGAGAGGGACGAAGGTGAAGGTTATAGAATATGGGACGGATATGGAAGTTGTGTTTCAAAATACCAACTTAGTGGGTGGGTTAGATCATCCCATGCATCTTCATGGGTTTGATTTCTACATTATTGGAACTGGTTTTGGGAATTTTGATGAACAAAATGACCCAAAGAGCTACAATCTTGTTGATCCTCCTCTTAGGAACACAGTCACTGTCCCCATAAGCGGATGGGATGCAATTAGATTCAAGGCCAACAATCCTGGTGTGTGGTACCTGCACTGCCATTTCGACCGTCACCTGACGTGGGGAATGGACACGGTTTTCATCGTGAATAATGGGAAACACAAGAAGGAAAAGTTGCTGCCTCCGCCACCAGATATGCCACCATGTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0010023 GO:0010035 GO:0010038 GO:0016491 GO:0016722 GO:0017144 GO:0018130 GO:0018958 GO:0019438 GO:0019748 GO:0042221 GO:0043167 GO:0043169 GO:0044237 GO:0044249 GO:0044550 GO:0046189 GO:0046483 GO:0046688 GO:0046872 GO:0046914 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

303

Amino Acids

34.02

Weight (kDa)

8.22

Isoelectric Point (pI)

26.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase_2	PF07731	172 - 284	1.4e-39	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48100
fragaria_vesca	FvH4_1g24380 FvH4_2g05800 FvH4_5g30730
malus_domestica	MD01G1234900.v1.1 MD01G1235100.v1.1 MD01G1235200.v1.1 MD07G1307400.v1.1 MD07G1308000.v1.1 MD10G1042300.v1.1 MD10G1042400.v1.1 MD10G1042500.v1.1 MD10G1042700.v1.1
prunus_persica	Prupe.2G325200_v2.0.a1 Prupe.6G242000_v2.0.a1 Prupe.8G046800_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1
pyrus_communis	pycom01g24320 pycom01g24330 pycom07g28020 pycom10g02950 pycom17g03690
rosa_chinensis	RchiOBHm_Chr1g0384031 RchiOBHm_Chr2g0120941 RchiOBHm_Chr2g0120971 RchiOBHm_Chr2g0121051 RchiOBHm_Chr2g0121181 RchiOBHm_Chr2g0121211 RchiOBHm_Chr3g0473931 RchiOBHm_Chr3g0473941 RchiOBHm_Chr6g0257941 RchiOBHm_Chr6g0284781
rosa_laevigata	RLG00000008541 RLG00000014737 RLG00000018604 RLG00000018607 RLG00000018608 RLG00000018610 RLG00000018611 RLG00000018613 RLG00000023967 RLG00000023970 RLG00000026078 RLG00000035183
rosa_multiflora	Rmu_sc0000079.1_g000043 Rmu_sc0000079.1_g000062 Rmu_sc0000079.1_g000069 Rmu_sc0000621.1_g000019 Rmu_sc0000621.1_g000025 Rmu_sc0000621.1_g000041 Rmu_sc0000652.1_g000018 Rmu_sc0002414.1_g000030 Rmu_sc0002414.1_g000033 Rmu_sc0002843.1_g000016 Rmu_sc0005137.1_g000035 Rmu_sc0005139.1_g000021
rosa_roxburghii	Rroxscaffold_2G00122530 Rroxscaffold_2G00122570 Rroxscaffold_2G00122580 Rroxscaffold_2G00122650 Rroxscaffold_4G00277080 Rroxscaffold_6G00407610 Rroxscaffold_6G00407620 Rroxscaffold_7G00209050
rosa_rugosa	Rorug01G0444300 Rorug02G0232700 Rorug02G0232700 Rorug02G0232900 Rorug03G0137100 Rorug05G0565600 Rorug05G0566500
rosa_samantha	Rh1BG427300 Rh1CG440100 Rh2CG278100 Rh2CG278200 Rh2CG278700 Rh2CG278800 Rh2CG279100 Rh2DG314200 Rh2DG314300 Rh2DG314600 Rh3AG187200 Rh3DG211700 Rh3DG211800 Rh5AG356600 Rh6BG078000 Rh6BG078700 Rh6CG073300 Rh6DG070300 Rh6DG190200 Rh6DG274700 Rh7BG365900
rosa_wichuraiana	Rw0G018400 Rw1G040270 Rw2G023160 Rw2G023170 Rw2G023190 Rw2G023200 Rw2G023220 Rw2G023230 Rw3G017140 Rw3G017150 Rw4G012840 Rw6G007580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	501, 795
Acc65I	GGTACC	1 cut(s)	783
AccB1I	GGYRCC	1 cut(s)	783
AccB7I	CCANNNNNTGG	1 cut(s)	83
AccI	GTMKAC	1 cut(s)	396
AccII	CGCG	1 cut(s)	470
AciI	CCGC	3 cut(s)	461, 738, 881
AclWI	GGATC	1 cut(s)	695
AcsI	RAATTY	1 cut(s)	658
AfaI	GTAC	3 cut(s)	122, 467, 785
AfiI	CCNNNNNNNGG	7 cut(s)	83, 310, 311, 499, 521, 737, 817
AflIII	ACRYGT	2 cut(s)	323, 468
AgsI	TTSAA	6 cut(s)	181, 241, 282, 439, 575, 760
AjiI	CACGTC	1 cut(s)	816
AjnI	CCWGG	3 cut(s)	172, 309, 772
AluBI	AGCT	4 cut(s)	353, 375, 410, 687
AluI	AGCT	4 cut(s)	353, 375, 410, 687
Alw26I	GTCTC	1 cut(s)	44
AlwI	GGATC	1 cut(s)	695
AlwNI	CAGNNNCTG	2 cut(s)	493, 725
AoxI	GGCC	1 cut(s)	762
ApeKI	GCWGC	3 cut(s)	53, 353, 874
ApoI	RAATTY	1 cut(s)	658
Asp718I	GGTACC	1 cut(s)	783
AspS9I	GGNCC	1 cut(s)	332
AsuC2I	CCSGG	1 cut(s)	36
AsuHPI	GGTGA	2 cut(s)	544, 800
AvaII	GGWCC	1 cut(s)	332
BanI	GGYRCC	1 cut(s)	783
BbvI	GCAGC	3 cut(s)	40, 340, 861
BccI	CCATC	1 cut(s)	735
BceAI	ACGGC	1 cut(s)	448
BciT130I	CCWGG	3 cut(s)	174, 311, 774
BcnI	CCSGG	1 cut(s)	36
BcoDI	GTCTC	1 cut(s)	44
BfaI	CTAG	1 cut(s)	57
BfuAI	ACCTGC	2 cut(s)	501, 795
BisI	GCNGC	3 cut(s)	54, 354, 875
BlsI	GCNGC	3 cut(s)	55, 355, 876
Bme1390I	CCNGG	4 cut(s)	36, 174, 311, 774
Bme18I	GGWCC	1 cut(s)	332
BmgBI	CACGTC	1 cut(s)	816
BmgT120I	GGNCC	1 cut(s)	332
BmiI	GGNNCC	4 cut(s)	246, 334, 384, 785
BmrFI	CCNGG	4 cut(s)	36, 174, 311, 774
BmrI	ACTGGG	1 cut(s)	71
BmsI	GCATC	2 cut(s)	622, 736
BmuI	ACTGGG	1 cut(s)	71
BpuEI	CTTGAG	1 cut(s)	203
BpuMI	CCSGG	1 cut(s)	36
BsaI	GGTCTC	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	310
Bsc4I	CCNNNNNNNGG	7 cut(s)	83, 310, 311, 499, 521, 737, 817
Bse1I	ACTGG	4 cut(s)	77, 230, 487, 652
BseBI	CCWGG	3 cut(s)	174, 311, 774
BseDI	CCNNGG	1 cut(s)	310
BseGI	GGATG	4 cut(s)	10, 604, 746, 751
BseLI	CCNNNNNNNGG	7 cut(s)	83, 310, 311, 499, 521, 737, 817
BseNI	ACTGG	4 cut(s)	77, 230, 487, 652
BseRI	GAGGAG	1 cut(s)	696
BseXI	GCAGC	3 cut(s)	40, 340, 861
BsgI	GTGCAG	1 cut(s)	773
Bsh1236I	CGCG	1 cut(s)	470
Bsh1285I	CGRYCG	1 cut(s)	805
BshFI	GGCC	1 cut(s)	764
BshNI	GGYRCC	1 cut(s)	783
BsiEI	CGRYCG	1 cut(s)	805
BsiSI	CCGG	1 cut(s)	36
BsiWI	CGTACG	1 cut(s)	465
BslFI	GGGAC	6 cut(s)	18, 236, 355, 538, 565, 713
BslI	CCNNNNNNNGG	7 cut(s)	83, 310, 311, 499, 521, 737, 817
BsmAI	GTCTC	1 cut(s)	44
BsmFI	GGGAC	6 cut(s)	18, 236, 355, 538, 565, 713
BsnI	GGCC	1 cut(s)	764
Bso31I	GGTCTC	1 cut(s)	44
Bsp143I	GATC	2 cut(s)	601, 700
BspACI	CCGC	3 cut(s)	461, 738, 881
BspANI	GGCC	1 cut(s)	764
BspFNI	CGCG	1 cut(s)	470
BspLI	GGNNCC	4 cut(s)	246, 334, 384, 785
BspMI	ACCTGC	2 cut(s)	501, 795
BspPI	GGATC	1 cut(s)	695
BspT107I	GGYRCC	1 cut(s)	783
BspTNI	GGTCTC	1 cut(s)	44
BsrI	ACTGG	4 cut(s)	77, 230, 487, 652
BssECI	CCNNGG	1 cut(s)	310
BssMI	GATC	2 cut(s)	601, 700
Bst2UI	CCWGG	3 cut(s)	174, 311, 774
Bst4CI	ACNGT	7 cut(s)	71, 269, 394, 721, 727, 806, 832
BstC8I	GCNNGC	1 cut(s)	358
BstDEI	CTNAG	2 cut(s)	586, 710
BstEII	GGTNACC	1 cut(s)	71
BstF5I	GGATG	4 cut(s)	10, 604, 746, 751
BstFNI	CGCG	1 cut(s)	470
BstKTI	GATC	2 cut(s)	604, 703
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	2 cut(s)	601, 700
BstMCI	CGRYCG	1 cut(s)	805
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 880
BstNI	CCWGG	3 cut(s)	174, 311, 774
BstNSI	RCATGY	1 cut(s)	327
BstPI	GGTNACC	1 cut(s)	71
BstSCI	CCNGG	4 cut(s)	34, 172, 309, 772
BstUI	CGCG	1 cut(s)	470
BstV1I	GCAGC	3 cut(s)	40, 340, 861
BstXI	CCANNNNNNTGG	1 cut(s)	589
BsuRI	GGCC	1 cut(s)	764
BtrI	CACGTC	1 cut(s)	816
BtsCI	GGATG	4 cut(s)	10, 604, 746, 751
BtsI	GCAGTG	1 cut(s)	790
BtsIMutI	CAGTG	3 cut(s)	480, 723, 790
BveI	ACCTGC	2 cut(s)	501, 795
Cac8I	GCNNGC	1 cut(s)	358
CaiI	CAGNNNCTG	2 cut(s)	493, 725
Cfr13I	GGNCC	1 cut(s)	332
Csp6I	GTAC	3 cut(s)	121, 466, 784
CviAII	CATG	6 cut(s)	49, 324, 361, 610, 620, 900
CviQI	GTAC	3 cut(s)	121, 466, 784
DdeI	CTNAG	2 cut(s)	586, 710
DpnI	GATC	2 cut(s)	603, 702
DpnII	GATC	2 cut(s)	601, 700
EciI	GGCGGA	2 cut(s)	450, 870
Eco31I	GGTCTC	1 cut(s)	44
Eco47I	GGWCC	1 cut(s)	332
Eco91I	GGTNACC	1 cut(s)	71
EcoO109I	RGGNCCY	1 cut(s)	332
EcoO65I	GGTNACC	1 cut(s)	71
EcoRII	CCWGG	3 cut(s)	172, 309, 772
EcoT22I	ATGCAT	1 cut(s)	615
FaeI	CATG	6 cut(s)	52, 327, 364, 613, 623, 903
FaqI	GGGAC	6 cut(s)	18, 236, 355, 538, 565, 713
FatI	CATG	6 cut(s)	48, 323, 360, 609, 619, 899
FblI	GTMKAC	1 cut(s)	396
Fnu4HI	GCNGC	3 cut(s)	54, 354, 875
FokI	GGATG	4 cut(s)	17, 591, 753, 758
Fsp4HI	GCNGC	3 cut(s)	54, 354, 875
FspBI	CTAG	1 cut(s)	57
GluI	GCNGC	3 cut(s)	54, 354, 875
HaeIII	GGCC	1 cut(s)	764
HapII	CCGG	1 cut(s)	36
Hin1II	CATG	6 cut(s)	52, 327, 364, 613, 623, 903
HindIII	AAGCTT	1 cut(s)	373
HinfI	GANTC	3 cut(s)	216, 343, 756
HpaII	CCGG	1 cut(s)	36
HphI	GGTGA	2 cut(s)	544, 800
Hpy166II	GTNNAC	1 cut(s)	397
Hpy188I	TCNGA	2 cut(s)	453, 489
Hpy188III	TCNNGA	4 cut(s)	19, 220, 253, 841
Hpy8I	GTNNAC	1 cut(s)	397
Hpy99I	CGWCG	1 cut(s)	273
HpyAV	CCTTC	4 cut(s)	179, 523, 529, 856
HpyCH4III	ACNGT	7 cut(s)	71, 269, 394, 721, 727, 806, 832
HpyCH4IV	ACGT	2 cut(s)	31, 815
HpyCH4V	TGCA	5 cut(s)	290, 508, 613, 749, 790
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 880
HpyF3I	CTNAG	2 cut(s)	586, 710
HpySE526I	ACGT	2 cut(s)	31, 815
Hsp92II	CATG	6 cut(s)	52, 327, 364, 613, 623, 903
KpnI	GGTACC	1 cut(s)	787
Kzo9I	GATC	2 cut(s)	601, 700
LmnI	GCTCC	2 cut(s)	244, 382
Lsp1109I	GCAGC	3 cut(s)	40, 340, 861
LweI	GCATC	2 cut(s)	622, 736
MaeI	CTAG	1 cut(s)	57
MaeII	ACGT	2 cut(s)	31, 815
MaeIII	GTNAC	4 cut(s)	16, 71, 721, 806
MalI	GATC	2 cut(s)	603, 702
MboI	GATC	2 cut(s)	601, 700
MboII	GAAGA	1 cut(s)	608
MfeI	CAATTG	1 cut(s)	285
MluCI	AATT	5 cut(s)	276, 285, 454, 658, 750
MluI	ACGCGT	1 cut(s)	468
MlyI	GAGTC	2 cut(s)	210, 337
MnlI	CCTC	5 cut(s)	507, 515, 714, 717, 888
Mph1103I	ATGCAT	1 cut(s)	615
MseI	TTAA	1 cut(s)	907
MslI	CAYNNNNRTG	1 cut(s)	618
MspI	CCGG	1 cut(s)	36
MspR9I	CCNGG	4 cut(s)	36, 174, 311, 774
MunI	CAATTG	1 cut(s)	285
MvaI	CCWGG	3 cut(s)	174, 311, 774
MvnI	CGCG	1 cut(s)	470
MwoI	GCNNNNNNNGC	2 cut(s)	59, 880
NciI	CCSGG	1 cut(s)	36
NdeII	GATC	2 cut(s)	601, 700
NlaIII	CATG	6 cut(s)	52, 327, 364, 613, 623, 903
NlaIV	GGNNCC	4 cut(s)	246, 334, 384, 785
NmuCI	GTSAC	3 cut(s)	16, 721, 806
NsiI	ATGCAT	1 cut(s)	615
NspI	RCATGY	1 cut(s)	327
PciI	ACATGT	1 cut(s)	323
PfeI	GAWTC	1 cut(s)	756
Pfl23II	CGTACG	1 cut(s)	465
PflMI	CCANNNNNTGG	1 cut(s)	83
PkrI	GCNGC	3 cut(s)	55, 355, 876
PleI	GAGTC	2 cut(s)	210, 337
PpsI	GAGTC	2 cut(s)	210, 337
PpuMI	RGGWCCY	1 cut(s)	332
PscI	ACATGT	1 cut(s)	323
Psp5II	RGGWCCY	1 cut(s)	332
Psp6I	CCWGG	3 cut(s)	172, 309, 772
PspEI	GGTNACC	1 cut(s)	71
PspGI	CCWGG	3 cut(s)	172, 309, 772
PspLI	CGTACG	1 cut(s)	465
PspN4I	GGNNCC	4 cut(s)	246, 334, 384, 785
PspPI	GGNCC	1 cut(s)	332
PspPPI	RGGWCCY	1 cut(s)	332
PstNI	CAGNNNCTG	2 cut(s)	493, 725
RsaI	GTAC	3 cut(s)	122, 467, 785
RsaNI	GTAC	3 cut(s)	121, 466, 784
RseI	CAYNNNNRTG	1 cut(s)	618
SaqAI	TTAA	1 cut(s)	907
SatI	GCNGC	3 cut(s)	54, 354, 875
Sau3AI	GATC	2 cut(s)	601, 700
Sau96I	GGNCC	1 cut(s)	332
SchI	GAGTC	2 cut(s)	210, 337
ScrFI	CCNGG	4 cut(s)	36, 174, 311, 774
SfaNI	GCATC	2 cut(s)	622, 736
SinI	GGWCC	1 cut(s)	332
SmiMI	CAYNNNNRTG	1 cut(s)	618
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	5 cut(s)	276, 285, 454, 658, 750
SsiI	CCGC	3 cut(s)	461, 738, 881
SspMI	CTAG	1 cut(s)	57
StyD4I	CCNGG	4 cut(s)	34, 172, 309, 772
TaaI	ACNGT	7 cut(s)	71, 269, 394, 721, 727, 806, 832
TaiI	ACGT	2 cut(s)	34, 818
TaqI	TCGA	2 cut(s)	90, 801
TasI	AATT	5 cut(s)	276, 285, 454, 658, 750
TatI	WGTACW	1 cut(s)	120
TfiI	GAWTC	1 cut(s)	756
Tru1I	TTAA	1 cut(s)	907
Tru9I	TTAA	1 cut(s)	907
TscAI	CASTG	3 cut(s)	487, 730, 797
TseFI	GTSAC	3 cut(s)	16, 721, 806
TseI	GCWGC	3 cut(s)	53, 353, 874
Tsp45I	GTSAC	3 cut(s)	16, 721, 806
TspDTI	ATGAA	4 cut(s)	377, 608, 681, 826
TspGWI	ACGGA	1 cut(s)	569
TspRI	CASTG	3 cut(s)	487, 730, 797
Van91I	CCANNNNNTGG	1 cut(s)	83
VpaK11BI	GGWCC	1 cut(s)	332
XapI	RAATTY	1 cut(s)	658
XceI	RCATGY	1 cut(s)	327
XmiI	GTMKAC	1 cut(s)	396
XspI	CTAG	1 cut(s)	57
Zsp2I	ATGCAT	1 cut(s)	615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.