Rh6DG190200

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000359
Physical Location & Seq
Forward (+)
34003302 .. 34019021
15720 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG190200.1

Sequence Viewer

Length: 681 bp
ATGGGTACCTTTCCAGATTTTCTGGGTTTATTTCTGCTATGTGGGATGCTGCATTGCATTGTTGAATGCCATGTCCATTACCACGACTTTGTACTCAAGAAGGAGAACTTTACAAGATTATGTAACACAAAGAGCATGCTGGTAGTGAATGGCAGTTTTCCGGGGCCAGTCATTCGTGTGCAAAAGGGGGATACTGTCTTTGTCAATGTTCACAATCAAGGAGATTATGGAGTCACTATTCACTGGCACGGAGTACATCAACCAAGAAATCCATGGTCAGATGGTCCTGAGTATATCACACAATGTGCCATTGAACCTGGTTCAAATTTTACTTACGAGGTTATATTTTCCGATGAGGAAGGAACACTTTGGTGGCATGCTCATAGTGAATGGACCAGAGCAAGTGTCCATGGTGCCATTGTCATTAGGCCCGTTGATAATACAGAGTTTCCATTTCCTAAACCTGATGGAGAAGATATTATTGTATTTGGAAGTTGGTATAATACTACTGAAGATGTGAACGATGTGGTTGCTGAGGACCTCCAAGATGGTAGTGACACTCCTAACTCGGATTGCTACACAATAAATGGACAACCAGGAGATTTTCTCCCATGTTCAAACGCTAGTACGTATCGCTTGCAAGTGGAGTATGGCAAGACATATCTTCTTCCGCCTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

226

Amino Acids

25.55

Weight (kDa)

4.78

Isoelectric Point (pI)

27.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 33 - 144 1e-41 Multicopper oxidase
Cu-oxidase PF00394 160 - 223 2.6e-06 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000359)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48100
fragaria_vesca FvH4_1g24380 FvH4_2g05800 FvH4_5g30730
malus_domestica MD01G1234900.v1.1 MD01G1235100.v1.1 MD01G1235200.v1.1 MD07G1307400.v1.1 MD07G1308000.v1.1 MD10G1042300.v1.1 MD10G1042400.v1.1 MD10G1042500.v1.1 MD10G1042700.v1.1
prunus_persica Prupe.2G325200_v2.0.a1 Prupe.6G242000_v2.0.a1 Prupe.8G046800_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1
pyrus_communis pycom01g24320 pycom01g24330 pycom07g28020 pycom10g02950 pycom17g03690
rosa_chinensis RchiOBHm_Chr1g0384031 RchiOBHm_Chr2g0120941 RchiOBHm_Chr2g0120971 RchiOBHm_Chr2g0121051 RchiOBHm_Chr2g0121181 RchiOBHm_Chr2g0121211 RchiOBHm_Chr3g0473931 RchiOBHm_Chr3g0473941 RchiOBHm_Chr6g0257941 RchiOBHm_Chr6g0284781
rosa_laevigata RLG00000008541 RLG00000014737 RLG00000018604 RLG00000018607 RLG00000018608 RLG00000018610 RLG00000018611 RLG00000018613 RLG00000023967 RLG00000023970 RLG00000026078 RLG00000035183
rosa_multiflora Rmu_sc0000079.1_g000043 Rmu_sc0000079.1_g000062 Rmu_sc0000079.1_g000069 Rmu_sc0000621.1_g000019 Rmu_sc0000621.1_g000025 Rmu_sc0000621.1_g000041 Rmu_sc0000652.1_g000018 Rmu_sc0002414.1_g000030 Rmu_sc0002414.1_g000033 Rmu_sc0002843.1_g000016 Rmu_sc0005137.1_g000035 Rmu_sc0005139.1_g000021
rosa_roxburghii Rroxscaffold_2G00122530 Rroxscaffold_2G00122570 Rroxscaffold_2G00122580 Rroxscaffold_2G00122650 Rroxscaffold_4G00277080 Rroxscaffold_6G00407610 Rroxscaffold_6G00407620 Rroxscaffold_7G00209050
rosa_rugosa Rorug01G0444300 Rorug02G0232700 Rorug02G0232700 Rorug02G0232900 Rorug03G0137100 Rorug05G0565600 Rorug05G0566500
rosa_samantha Rh1BG427300 Rh1CG440100 Rh2CG278100 Rh2CG278200 Rh2CG278700 Rh2CG278800 Rh2CG279100 Rh2DG314200 Rh2DG314300 Rh2DG314600 Rh3AG187200 Rh3DG211700 Rh3DG211800 Rh5AG356600 Rh6BG078000 Rh6BG078700 Rh6CG073300 Rh6DG070300 Rh6DG190200 Rh6DG274700 Rh7BG365900
rosa_wichuraiana Rw0G018400 Rw1G040270 Rw2G023160 Rw2G023170 Rw2G023190 Rw2G023200 Rw2G023220 Rw2G023230 Rw3G017140 Rw3G017150 Rw4G012840 Rw6G007580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 5
AccB1I GGYRCC 2 cut(s) 5, 413
AciI CCGC 1 cut(s) 671
AcsI RAATTY 1 cut(s) 325
AcuI CTGAAG 1 cut(s) 531
AdeI CACNNNGTG 1 cut(s) 305
AfaI GTAC 4 cut(s) 7, 93, 255, 628
AgsI TTSAA 4 cut(s) 65, 314, 324, 618
AjnI CCWGG 2 cut(s) 316, 595
AleI CACNNNNGTG 1 cut(s) 370
AoxI GGCC 2 cut(s) 164, 428
ApeKI GCWGC 1 cut(s) 49
ApoI RAATTY 1 cut(s) 325
Asp718I GGTACC 1 cut(s) 5
AspS9I GGNCC 5 cut(s) 164, 284, 393, 429, 538
AsuC2I CCSGG 1 cut(s) 162
AvaII GGWCC 3 cut(s) 284, 393, 538
BanI GGYRCC 2 cut(s) 5, 413
BbvCI CCTCAGC 1 cut(s) 534
BbvI GCAGC 1 cut(s) 36
BccI CCATC 3 cut(s) 275, 461, 542
BcgI CGANNNNNNTGC 2 cut(s) 512, 546
BciT130I CCWGG 2 cut(s) 318, 597
BciVI GTATCC 1 cut(s) 184
BcnI CCSGG 1 cut(s) 162
BfaI CTAG 1 cut(s) 624
BfuI GTATCC 1 cut(s) 184
BisI GCNGC 1 cut(s) 50
BlsI GCNGC 1 cut(s) 51
Bme1390I CCNGG 3 cut(s) 162, 318, 597
Bme18I GGWCC 3 cut(s) 284, 393, 538
BmgT120I GGNCC 5 cut(s) 164, 284, 393, 429, 538
BmiI GGNNCC 3 cut(s) 7, 165, 415
BmrFI CCNGG 3 cut(s) 162, 318, 597
BmsI GCATC 1 cut(s) 36
BplI GAGNNNNNCTC 2 cut(s) 591, 623
Bpu10I CCTNAGC 1 cut(s) 534
BpuEI CTTGAG 1 cut(s) 80
BpuMI CCSGG 1 cut(s) 162
BsaAI YACGTR 1 cut(s) 630
BsaJI CCNNGG 3 cut(s) 161, 272, 409
Bse1I ACTGG 2 cut(s) 167, 248
Bse3DI GCAATG 1 cut(s) 52
BseBI CCWGG 2 cut(s) 318, 597
BseDI CCNNGG 3 cut(s) 161, 272, 409
BseGI GGATG 1 cut(s) 51
BseMI GCAATG 1 cut(s) 52
BseMII CTCAG 2 cut(s) 279, 525
BseNI ACTGG 2 cut(s) 167, 248
BseXI GCAGC 1 cut(s) 36
BshFI GGCC 2 cut(s) 166, 430
BshNI GGYRCC 2 cut(s) 5, 413
BsiSI CCGG 1 cut(s) 161
BsmI GAATGC 1 cut(s) 71
BsnI GGCC 2 cut(s) 166, 430
Bsp19I CCATGG 2 cut(s) 272, 409
BspACI CCGC 1 cut(s) 671
BspANI GGCC 2 cut(s) 166, 430
BspCNI CTCAG 2 cut(s) 280, 526
BspLI GGNNCC 3 cut(s) 7, 165, 415
BspT107I GGYRCC 2 cut(s) 5, 413
BsrDI GCAATG 1 cut(s) 52
BsrI ACTGG 2 cut(s) 167, 248
BssECI CCNNGG 3 cut(s) 161, 272, 409
BssT1I CCWWGG 2 cut(s) 272, 409
Bst2UI CCWGG 2 cut(s) 318, 597
Bst4CI ACNGT 1 cut(s) 196
BstBAI YACGTR 1 cut(s) 630
BstC8I GCNNGC 3 cut(s) 137, 378, 638
BstDEI CTNAG 2 cut(s) 288, 534
BstDSI CCRYGG 2 cut(s) 272, 409
BstF5I GGATG 1 cut(s) 51
BstNI CCWGG 2 cut(s) 318, 597
BstNSI RCATGY 2 cut(s) 139, 380
BstSCI CCNGG 3 cut(s) 160, 316, 595
BstSNI TACGTA 1 cut(s) 630
BstV1I GCAGC 1 cut(s) 36
BsuI GTATCC 1 cut(s) 184
BsuRI GGCC 2 cut(s) 166, 430
BtgI CCRYGG 2 cut(s) 272, 409
BtsCI GGATG 1 cut(s) 51
BtsIMutI CAGTG 1 cut(s) 241
Cac8I GCNNGC 3 cut(s) 137, 378, 638
Cfr13I GGNCC 5 cut(s) 164, 284, 393, 429, 538
CsiI ACCWGGT 1 cut(s) 316
Csp6I GTAC 4 cut(s) 6, 92, 254, 627
CviAII CATG 6 cut(s) 71, 136, 273, 377, 410, 612
CviJI RGCY 2 cut(s) 166, 430
CviKI_1 RGCY 2 cut(s) 166, 430
CviQI GTAC 4 cut(s) 6, 92, 254, 627
DdeI CTNAG 2 cut(s) 288, 534
DraIII CACNNNGTG 1 cut(s) 305
EciI GGCGGA 1 cut(s) 660
Eco105I TACGTA 1 cut(s) 630
Eco130I CCWWGG 2 cut(s) 272, 409
Eco47I GGWCC 3 cut(s) 284, 393, 538
Eco57I CTGAAG 1 cut(s) 531
EcoO109I RGGNCCY 1 cut(s) 538
EcoRII CCWGG 2 cut(s) 316, 595
EcoT14I CCWWGG 2 cut(s) 272, 409
ErhI CCWWGG 2 cut(s) 272, 409
FaeI CATG 6 cut(s) 74, 139, 276, 380, 413, 615
FalI AAGNNNNNCTT 4 cut(s) 92, 124, 351, 383
FatI CATG 6 cut(s) 70, 135, 272, 376, 409, 611
Fnu4HI GCNGC 1 cut(s) 50
FokI GGATG 1 cut(s) 58
Fsp4HI GCNGC 1 cut(s) 50
FspBI CTAG 1 cut(s) 624
GluI GCNGC 1 cut(s) 50
HaeIII GGCC 2 cut(s) 166, 430
HapII CCGG 1 cut(s) 161
Hin1II CATG 6 cut(s) 74, 139, 276, 380, 413, 615
HinfI GANTC 1 cut(s) 231
HpaII CCGG 1 cut(s) 161
Hpy166II GTNNAC 2 cut(s) 211, 520
Hpy188I TCNGA 3 cut(s) 280, 352, 571
Hpy188III TCNNGA 3 cut(s) 14, 97, 287
Hpy8I GTNNAC 2 cut(s) 211, 520
HpyAV CCTTC 2 cut(s) 94, 353
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4IV ACGT 1 cut(s) 629
HpyCH4V TGCA 4 cut(s) 52, 57, 181, 640
HpyF3I CTNAG 2 cut(s) 288, 534
HpySE526I ACGT 1 cut(s) 629
Hsp92II CATG 6 cut(s) 74, 139, 276, 380, 413, 615
KpnI GGTACC 1 cut(s) 9
Lsp1109I GCAGC 1 cut(s) 36
LweI GCATC 1 cut(s) 36
MabI ACCWGGT 1 cut(s) 316
MaeI CTAG 1 cut(s) 624
MaeII ACGT 1 cut(s) 629
MaeIII GTNAC 3 cut(s) 122, 232, 554
MboII GAAGA 4 cut(s) 485, 524, 656, 659
MluCI AATT 1 cut(s) 325
MlyI GAGTC 1 cut(s) 240
MnlI CCTC 4 cut(s) 331, 349, 529, 551
MseI TTAA 1 cut(s) 679
MslI CAYNNNNRTG 2 cut(s) 176, 370
MspI CCGG 1 cut(s) 161
MspR9I CCNGG 3 cut(s) 162, 318, 597
Mva1269I GAATGC 1 cut(s) 71
MvaI CCWGG 2 cut(s) 318, 597
NciI CCSGG 1 cut(s) 162
NcoI CCATGG 2 cut(s) 272, 409
NlaIII CATG 6 cut(s) 74, 139, 276, 380, 413, 615
NlaIV GGNNCC 3 cut(s) 7, 165, 415
NmuCI GTSAC 2 cut(s) 232, 554
NspI RCATGY 2 cut(s) 139, 380
OliI CACNNNNGTG 1 cut(s) 370
PaeI GCATGC 2 cut(s) 139, 380
PctI GAATGC 1 cut(s) 71
PkrI GCNGC 1 cut(s) 51
PleI GAGTC 1 cut(s) 239
PpsI GAGTC 1 cut(s) 239
Ppu21I YACGTR 1 cut(s) 630
PpuMI RGGWCCY 1 cut(s) 538
Psp5II RGGWCCY 1 cut(s) 538
Psp6I CCWGG 2 cut(s) 316, 595
PspGI CCWGG 2 cut(s) 316, 595
PspN4I GGNNCC 3 cut(s) 7, 165, 415
PspPI GGNCC 5 cut(s) 164, 284, 393, 429, 538
PspPPI RGGWCCY 1 cut(s) 538
RsaI GTAC 4 cut(s) 7, 93, 255, 628
RsaNI GTAC 4 cut(s) 6, 92, 254, 627
RseI CAYNNNNRTG 2 cut(s) 176, 370
SaqAI TTAA 1 cut(s) 679
SatI GCNGC 1 cut(s) 50
Sau96I GGNCC 5 cut(s) 164, 284, 393, 429, 538
SchI GAGTC 1 cut(s) 240
ScrFI CCNGG 3 cut(s) 162, 318, 597
SetI ASST 6 cut(s) 11, 319, 342, 466, 543, 632
SexAI ACCWGGT 1 cut(s) 316
SfaNI GCATC 1 cut(s) 36
SinI GGWCC 3 cut(s) 284, 393, 538
SmiMI CAYNNNNRTG 2 cut(s) 176, 370
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
SnaBI TACGTA 1 cut(s) 630
SphI GCATGC 2 cut(s) 139, 380
Sse9I AATT 1 cut(s) 325
SsiI CCGC 1 cut(s) 671
SspMI CTAG 1 cut(s) 624
StyD4I CCNGG 3 cut(s) 160, 316, 595
StyI CCWWGG 2 cut(s) 272, 409
TaaI ACNGT 1 cut(s) 196
TaiI ACGT 1 cut(s) 632
TasI AATT 1 cut(s) 325
TatI WGTACW 2 cut(s) 91, 253
Tru1I TTAA 1 cut(s) 679
Tru9I TTAA 1 cut(s) 679
TscAI CASTG 1 cut(s) 248
TseFI GTSAC 2 cut(s) 232, 554
TseI GCWGC 1 cut(s) 49
Tsp45I GTSAC 2 cut(s) 232, 554
TspGWI ACGGA 1 cut(s) 264
TspRI CASTG 1 cut(s) 248
VpaK11BI GGWCC 3 cut(s) 284, 393, 538
XapI RAATTY 1 cut(s) 325
XceI RCATGY 2 cut(s) 139, 380
XcmI CCANNNNNNNNNTGG 1 cut(s) 270
XspI CTAG 1 cut(s) 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.