Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000359

Physical Location & Seq

Genomic Coordinates Reverse (-)

32435588 .. 32436339

Gene Structure 752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018607

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGAAGGTTTCCAGAATTACCCTGCATCTGCAACTTCTGGGGTTGTTATTGGCTGTTAATGGCTTCCTCCATTGCCAAGCTTGGCCAGCTCGTTACACTTTTGTGGTGGAAAACACTACATACAAAAGACTCTGCAGCACAAAGAACATCTTGACTGTAAATGGCCAGTTTCCGGGACCGACTTTGTATGTTCACAAAGGACACACTATCATCGTCGATGTCTTTAACAAAGGCAATCGTAACATTACTATCCACTGGCATGGTGTTGCGCAACCAAGATATCCATGGTCGGACGGACCAGACTATATCACACAGTGCCCAATTCAACCGGGAGCCAAGTTCACCCAAAAGATCATTTTCTCAAAGGAGGAAGGCACCCTTTGGTGGCATGCTCACAGTGAGTGGGATCGAGCCACTGTCCACGGTCCCATCATCATATACCCCAACAAGAAGAAGAATTACCCTTTTGGCAAGCCGGAGGGGAACCTAATACTTCCGACGCTTATCTCATCAATGGTCAACCTGGCGATCTGTATCCATGCTCTAAATCAGGTCAGCACGCCAACTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0010023 GO:0010035 GO:0010038 GO:0016491 GO:0016722 GO:0017144 GO:0018130 GO:0018958 GO:0019438 GO:0019748 GO:0042221 GO:0043167 GO:0043169 GO:0044237 GO:0044249 GO:0044550 GO:0046189 GO:0046483 GO:0046688 GO:0046872 GO:0046914 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

191

Amino Acids

21.53

Weight (kDa)

9.54

Isoelectric Point (pI)

28.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase_3	PF07732	36 - 150	1.9e-40	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48100
fragaria_vesca	FvH4_1g24380 FvH4_2g05800 FvH4_5g30730
malus_domestica	MD01G1234900.v1.1 MD01G1235100.v1.1 MD01G1235200.v1.1 MD07G1307400.v1.1 MD07G1308000.v1.1 MD10G1042300.v1.1 MD10G1042400.v1.1 MD10G1042500.v1.1 MD10G1042700.v1.1
prunus_persica	Prupe.2G325200_v2.0.a1 Prupe.6G242000_v2.0.a1 Prupe.8G046800_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1
pyrus_communis	pycom01g24320 pycom01g24330 pycom07g28020 pycom10g02950 pycom17g03690
rosa_chinensis	RchiOBHm_Chr1g0384031 RchiOBHm_Chr2g0120941 RchiOBHm_Chr2g0120971 RchiOBHm_Chr2g0121051 RchiOBHm_Chr2g0121181 RchiOBHm_Chr2g0121211 RchiOBHm_Chr3g0473931 RchiOBHm_Chr3g0473941 RchiOBHm_Chr6g0257941 RchiOBHm_Chr6g0284781
rosa_laevigata	RLG00000008541 RLG00000014737 RLG00000018604 RLG00000018607 RLG00000018608 RLG00000018610 RLG00000018611 RLG00000018613 RLG00000023967 RLG00000023970 RLG00000026078 RLG00000035183
rosa_multiflora	Rmu_sc0000079.1_g000043 Rmu_sc0000079.1_g000062 Rmu_sc0000079.1_g000069 Rmu_sc0000621.1_g000019 Rmu_sc0000621.1_g000025 Rmu_sc0000621.1_g000041 Rmu_sc0000652.1_g000018 Rmu_sc0002414.1_g000030 Rmu_sc0002414.1_g000033 Rmu_sc0002843.1_g000016 Rmu_sc0005137.1_g000035 Rmu_sc0005139.1_g000021
rosa_roxburghii	Rroxscaffold_2G00122530 Rroxscaffold_2G00122570 Rroxscaffold_2G00122580 Rroxscaffold_2G00122650 Rroxscaffold_4G00277080 Rroxscaffold_6G00407610 Rroxscaffold_6G00407620 Rroxscaffold_7G00209050
rosa_rugosa	Rorug01G0444300 Rorug02G0232700 Rorug02G0232700 Rorug02G0232900 Rorug03G0137100 Rorug05G0565600 Rorug05G0566500
rosa_samantha	Rh1BG427300 Rh1CG440100 Rh2CG278100 Rh2CG278200 Rh2CG278700 Rh2CG278800 Rh2CG279100 Rh2DG314200 Rh2DG314300 Rh2DG314600 Rh3AG187200 Rh3DG211700 Rh3DG211800 Rh5AG356600 Rh6BG078000 Rh6BG078700 Rh6CG073300 Rh6DG070300 Rh6DG190200 Rh6DG274700 Rh7BG365900
rosa_wichuraiana	Rw0G018400 Rw1G040270 Rw2G023160 Rw2G023170 Rw2G023190 Rw2G023200 Rw2G023220 Rw2G023230 Rw3G017140 Rw3G017150 Rw4G012840 Rw6G007580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	270
AccB1I	GGYRCC	1 cut(s)	374
AclWI	GGATC	1 cut(s)	414
AcoI	YGGCCR	2 cut(s)	83, 163
AdeI	CACNNNGTG	1 cut(s)	315
AfiI	CCNNNNNNNGG	2 cut(s)	172, 384
AgsI	TTSAA	1 cut(s)	326
AjnI	CCWGG	1 cut(s)	522
AleI	CACNNNNGTG	1 cut(s)	101
AluBI	AGCT	2 cut(s)	80, 89
AluI	AGCT	2 cut(s)	80, 89
AlwI	GGATC	1 cut(s)	414
AoxI	GGCC	2 cut(s)	83, 163
ApeKI	GCWGC	1 cut(s)	135
AspLEI	GCGC	1 cut(s)	271
AspS9I	GGNCC	3 cut(s)	176, 296, 425
AsuC2I	CCSGG	2 cut(s)	174, 330
AsuHPI	GGTGA	1 cut(s)	334
AvaII	GGWCC	3 cut(s)	176, 296, 425
BaeGI	GKGCMC	1 cut(s)	320
BalI	TGGCCA	2 cut(s)	85, 165
BanI	GGYRCC	1 cut(s)	374
BarI	GAAGNNNNNNTAC	2 cut(s)	443, 475
BbvI	GCAGC	1 cut(s)	147
BccI	CCATC	1 cut(s)	437
BciT130I	CCWGG	1 cut(s)	524
BciVI	GTATCC	1 cut(s)	545
BcnI	CCSGG	2 cut(s)	174, 330
BfmI	CTRYAG	1 cut(s)	133
BfuI	GTATCC	1 cut(s)	545
BisI	GCNGC	1 cut(s)	136
BlsI	GCNGC	1 cut(s)	137
Bme1390I	CCNGG	3 cut(s)	174, 330, 524
Bme18I	GGWCC	3 cut(s)	176, 296, 425
BmgT120I	GGNCC	3 cut(s)	176, 296, 425
BmiI	GGNNCC	5 cut(s)	177, 334, 376, 427, 485
BmrFI	CCNGG	3 cut(s)	174, 330, 524
BmsI	GCATC	1 cut(s)	34
BpuMI	CCSGG	2 cut(s)	174, 330
BsaBI	GATNNNNATC	1 cut(s)	533
BsaJI	CCNNGG	2 cut(s)	284, 421
Bsc4I	CCNNNNNNNGG	2 cut(s)	172, 384
Bse1I	ACTGG	2 cut(s)	166, 260
Bse3DI	GCAATG	1 cut(s)	70
Bse8I	GATNNNNATC	1 cut(s)	533
BseBI	CCWGG	1 cut(s)	524
BseDI	CCNNGG	2 cut(s)	284, 421
BseJI	GATNNNNATC	1 cut(s)	533
BseLI	CCNNNNNNNGG	2 cut(s)	172, 384
BseMI	GCAATG	1 cut(s)	70
BseNI	ACTGG	2 cut(s)	166, 260
BseSI	GKGCMC	1 cut(s)	320
BseXI	GCAGC	1 cut(s)	147
BshFI	GGCC	2 cut(s)	85, 165
BshNI	GGYRCC	1 cut(s)	374
BsiSI	CCGG	3 cut(s)	173, 329, 476
BslFI	GGGAC	2 cut(s)	189, 411
BslI	CCNNNNNNNGG	2 cut(s)	172, 384
BsmFI	GGGAC	2 cut(s)	189, 411
BsnI	GGCC	2 cut(s)	85, 165
Bsp1286I	GDGCHC	1 cut(s)	320
Bsp143I	GATC	3 cut(s)	351, 406, 528
Bsp19I	CCATGG	1 cut(s)	284
BspANI	GGCC	2 cut(s)	85, 165
BspLI	GGNNCC	5 cut(s)	177, 334, 376, 427, 485
BspMAI	CTGCAG	1 cut(s)	137
BspPI	GGATC	1 cut(s)	414
BspT107I	GGYRCC	1 cut(s)	374
BsrDI	GCAATG	1 cut(s)	70
BsrI	ACTGG	2 cut(s)	166, 260
BssECI	CCNNGG	2 cut(s)	284, 421
BssMI	GATC	3 cut(s)	351, 406, 528
BssT1I	CCWWGG	1 cut(s)	284
Bst2UI	CCWGG	1 cut(s)	524
Bst4CI	ACNGT	5 cut(s)	157, 315, 398, 418, 425
BstC8I	GCNNGC	4 cut(s)	87, 390, 473, 560
BstDSI	CCRYGG	2 cut(s)	284, 421
BstHHI	GCGC	1 cut(s)	271
BstKTI	GATC	3 cut(s)	354, 409, 531
BstMBI	GATC	3 cut(s)	351, 406, 528
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNI	CCWGG	1 cut(s)	524
BstNSI	RCATGY	1 cut(s)	392
BstSCI	CCNGG	3 cut(s)	172, 328, 522
BstSFI	CTRYAG	1 cut(s)	133
BstSLI	GKGCMC	1 cut(s)	320
BstV1I	GCAGC	1 cut(s)	147
BstXI	CCANNNNNNTGG	1 cut(s)	260
BsuI	GTATCC	1 cut(s)	545
BsuRI	GGCC	2 cut(s)	85, 165
BtgI	CCRYGG	2 cut(s)	284, 421
BtsIMutI	CAGTG	4 cut(s)	253, 320, 403, 414
Cac8I	GCNNGC	4 cut(s)	87, 390, 473, 560
CfoI	GCGC	1 cut(s)	271
Cfr13I	GGNCC	3 cut(s)	176, 296, 425
CseI	GACGC	1 cut(s)	508
CviAII	CATG	4 cut(s)	260, 285, 389, 539
CviJI	RGCY	9 cut(s)	53, 63, 80, 85, 89, 165, 335, 413, 475
CviKI_1	RGCY	9 cut(s)	53, 63, 80, 85, 89, 165, 335, 413, 475
DpnI	GATC	3 cut(s)	353, 408, 530
DpnII	GATC	3 cut(s)	351, 406, 528
DraIII	CACNNNGTG	1 cut(s)	315
EaeI	YGGCCR	2 cut(s)	83, 163
Eco130I	CCWWGG	1 cut(s)	284
Eco32I	GATATC	1 cut(s)	281
Eco47I	GGWCC	3 cut(s)	176, 296, 425
EcoRII	CCWGG	1 cut(s)	522
EcoRV	GATATC	1 cut(s)	281
EcoT14I	CCWWGG	1 cut(s)	284
ErhI	CCWWGG	1 cut(s)	284
FaeI	CATG	4 cut(s)	263, 288, 392, 542
FalI	AAGNNNNNCTT	4 cut(s)	134, 166, 363, 395
FaqI	GGGAC	2 cut(s)	189, 411
FatI	CATG	4 cut(s)	259, 284, 388, 538
Fnu4HI	GCNGC	1 cut(s)	136
Fsp4HI	GCNGC	1 cut(s)	136
FspI	TGCGCA	1 cut(s)	270
GlaI	GCGC	1 cut(s)	270
GluI	GCNGC	1 cut(s)	136
HaeIII	GGCC	2 cut(s)	85, 165
HapII	CCGG	3 cut(s)	173, 329, 476
HgaI	GACGC	1 cut(s)	508
HhaI	GCGC	1 cut(s)	271
Hin1II	CATG	4 cut(s)	263, 288, 392, 542
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HincII	GTYRAC	1 cut(s)	520
HindII	GTYRAC	1 cut(s)	520
HindIII	AAGCTT	1 cut(s)	78
HinfI	GANTC	1 cut(s)	129
HpaII	CCGG	3 cut(s)	173, 329, 476
HphI	GGTGA	1 cut(s)	334
Hpy166II	GTNNAC	4 cut(s)	193, 342, 421, 520
Hpy188I	TCNGA	2 cut(s)	292, 498
Hpy188III	TCNNGA	2 cut(s)	12, 151
Hpy8I	GTNNAC	4 cut(s)	193, 342, 421, 520
Hpy99I	CGWCG	2 cut(s)	218, 502
HpyAV	CCTTC	1 cut(s)	365
HpyCH4III	ACNGT	5 cut(s)	157, 315, 398, 418, 425
HpyCH4V	TGCA	3 cut(s)	25, 31, 135
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
Hsp92II	CATG	4 cut(s)	263, 288, 392, 542
HspAI	GCGC	1 cut(s)	269
Kzo9I	GATC	3 cut(s)	351, 406, 528
LmnI	GCTCC	1 cut(s)	332
Lsp1109I	GCAGC	1 cut(s)	147
LweI	GCATC	1 cut(s)	34
MaeIII	GTNAC	2 cut(s)	92, 239
MalI	GATC	3 cut(s)	353, 408, 530
MboI	GATC	3 cut(s)	351, 406, 528
MboII	GAAGA	2 cut(s)	463, 466
MhlI	GDGCHC	1 cut(s)	320
MlsI	TGGCCA	2 cut(s)	85, 165
MluCI	AATT	3 cut(s)	15, 321, 457
MluNI	TGGCCA	2 cut(s)	85, 165
MlyI	GAGTC	1 cut(s)	123
MmeI	TCCRAC	2 cut(s)	270, 521
MnlI	CCTC	3 cut(s)	77, 361, 472
Mox20I	TGGCCA	2 cut(s)	85, 165
MscI	TGGCCA	2 cut(s)	85, 165
MseI	TTAA	2 cut(s)	57, 225
MslI	CAYNNNNRTG	2 cut(s)	101, 258
Msp20I	TGGCCA	2 cut(s)	85, 165
MspI	CCGG	3 cut(s)	173, 329, 476
MspR9I	CCNGG	3 cut(s)	174, 330, 524
MvaI	CCWGG	1 cut(s)	524
MwoI	GCNNNNNNNGC	1 cut(s)	86
NciI	CCSGG	2 cut(s)	174, 330
NcoI	CCATGG	1 cut(s)	284
NdeII	GATC	3 cut(s)	351, 406, 528
NlaIII	CATG	4 cut(s)	263, 288, 392, 542
NlaIV	GGNNCC	5 cut(s)	177, 334, 376, 427, 485
NsbI	TGCGCA	1 cut(s)	270
NspI	RCATGY	1 cut(s)	392
OliI	CACNNNNGTG	1 cut(s)	101
PaeI	GCATGC	1 cut(s)	392
PfoI	TCCNGGA	1 cut(s)	172
PkrI	GCNGC	1 cut(s)	137
PleI	GAGTC	1 cut(s)	123
PpsI	GAGTC	1 cut(s)	123
Psp6I	CCWGG	1 cut(s)	522
PspGI	CCWGG	1 cut(s)	522
PspN4I	GGNNCC	5 cut(s)	177, 334, 376, 427, 485
PspPI	GGNCC	3 cut(s)	176, 296, 425
PstI	CTGCAG	1 cut(s)	137
RseI	CAYNNNNRTG	2 cut(s)	101, 258
SaqAI	TTAA	2 cut(s)	57, 225
SatI	GCNGC	1 cut(s)	136
Sau3AI	GATC	3 cut(s)	351, 406, 528
Sau96I	GGNCC	3 cut(s)	176, 296, 425
SchI	GAGTC	1 cut(s)	123
ScrFI	CCNGG	3 cut(s)	174, 330, 524
SduI	GDGCHC	1 cut(s)	320
SetI	ASST	6 cut(s)	9, 82, 91, 489, 525, 555
SfaNI	GCATC	1 cut(s)	34
SfcI	CTRYAG	1 cut(s)	133
SinI	GGWCC	3 cut(s)	176, 296, 425
SmiMI	CAYNNNNRTG	2 cut(s)	101, 258
SphI	GCATGC	1 cut(s)	392
Sse9I	AATT	3 cut(s)	15, 321, 457
StyD4I	CCNGG	3 cut(s)	172, 328, 522
StyI	CCWWGG	1 cut(s)	284
TaaI	ACNGT	5 cut(s)	157, 315, 398, 418, 425
TaqI	TCGA	2 cut(s)	216, 409
TaqII	GACCGA	1 cut(s)	193
TasI	AATT	3 cut(s)	15, 321, 457
Tru1I	TTAA	2 cut(s)	57, 225
Tru9I	TTAA	2 cut(s)	57, 225
TscAI	CASTG	4 cut(s)	260, 320, 403, 421
TseI	GCWGC	1 cut(s)	135
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	309
TspRI	CASTG	4 cut(s)	260, 320, 403, 421
VpaK11BI	GGWCC	3 cut(s)	176, 296, 425
XceI	RCATGY	1 cut(s)	392
XcmI	CCANNNNNNNNNTGG	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.