Lignin degradation and detoxification of lignin-derived products
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 21 |
| Acc36I | ACCTGC | 1 cut(s) | 1075 |
| AccB1I | GGYRCC | 1 cut(s) | 125 |
| AccI | GTMKAC | 1 cut(s) | 621 |
| AccII | CGCG | 2 cut(s) | 898, 1103 |
| AciI | CCGC | 4 cut(s) | 612, 906, 1010, 1046 |
| AclWI | GGATC | 2 cut(s) | 165, 1244 |
| AcoI | YGGCCR | 2 cut(s) | 609, 903 |
| AcsI | RAATTY | 2 cut(s) | 237, 1003 |
| AcuI | CTGAAG | 2 cut(s) | 284, 1040 |
| AdeI | CACNNNGTG | 1 cut(s) | 66 |
| AfaI | GTAC | 4 cut(s) | 1040, 1052, 1089, 1097 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 135, 1070, 1286 |
| AflIII | ACRYGT | 2 cut(s) | 852, 896 |
| AgsI | TTSAA | 6 cut(s) | 77, 391, 702, 1234, 1262, 1309 |
| AjnI | CCWGG | 3 cut(s) | 352, 550, 1321 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 982, 1014 |
| AluBI | AGCT | 6 cut(s) | 510, 777, 927, 959, 1114, 1415 |
| AluI | AGCT | 6 cut(s) | 510, 777, 927, 959, 1114, 1415 |
| Alw21I | GWGCWC | 1 cut(s) | 1116 |
| Alw26I | GTCTC | 3 cut(s) | 421, 773, 847 |
| AlwI | GGATC | 2 cut(s) | 165, 1244 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1090 |
| AoxI | GGCC | 5 cut(s) | 303, 590, 609, 884, 903 |
| ApoI | RAATTY | 2 cut(s) | 237, 1003 |
| AspLEI | GCGC | 3 cut(s) | 22, 635, 1036 |
| AspS9I | GGNCC | 6 cut(s) | 47, 176, 638, 884, 1225, 1406 |
| AsuC2I | CCSGG | 1 cut(s) | 81 |
| AsuHPI | GGTGA | 4 cut(s) | 85, 406, 532, 540 |
| AsuNHI | GCTAGC | 1 cut(s) | 506 |
| AvaII | GGWCC | 5 cut(s) | 47, 176, 638, 1225, 1406 |
| BaeGI | GKGCMC | 2 cut(s) | 71, 866 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1079, 1112 |
| BanI | GGYRCC | 1 cut(s) | 125 |
| BanII | GRGCYC | 1 cut(s) | 1116 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1071, 1103 |
| BauI | CACGAG | 1 cut(s) | 1115 |
| Bbv12I | GWGCWC | 1 cut(s) | 1116 |
| BccI | CCATC | 7 cut(s) | 188, 391, 476, 551, 1161, 1307, 1353 |
| BciT130I | CCWGG | 3 cut(s) | 354, 552, 1323 |
| BciVI | GTATCC | 2 cut(s) | 375, 1369 |
| BcnI | CCSGG | 1 cut(s) | 81 |
| BcoDI | GTCTC | 3 cut(s) | 421, 773, 847 |
| BfaI | CTAG | 3 cut(s) | 507, 909, 939 |
| BfmI | CTRYAG | 1 cut(s) | 615 |
| BfoI | RGCGCY | 1 cut(s) | 636 |
| BfuAI | ACCTGC | 1 cut(s) | 1075 |
| BfuI | GTATCC | 2 cut(s) | 375, 1369 |
| BisI | GCNGC | 3 cut(s) | 612, 906, 1046 |
| BlsI | GCNGC | 3 cut(s) | 613, 907, 1047 |
| BmcAI | AGTACT | 1 cut(s) | 1040 |
| Bme1390I | CCNGG | 4 cut(s) | 81, 354, 552, 1323 |
| Bme18I | GGWCC | 5 cut(s) | 47, 176, 638, 1225, 1406 |
| BmgT120I | GGNCC | 6 cut(s) | 47, 176, 638, 884, 1225, 1406 |
| BmiI | GGNNCC | 7 cut(s) | 85, 127, 178, 281, 315, 1227, 1407 |
| BmrFI | CCNGG | 4 cut(s) | 81, 354, 552, 1323 |
| BmsI | GCATC | 3 cut(s) | 493, 755, 1171 |
| BmtI | GCTAGC | 1 cut(s) | 510 |
| BpmI | CTGGAG | 2 cut(s) | 1112, 1344 |
| BpuMI | CCSGG | 1 cut(s) | 81 |
| BsaBI | GATNNNNATC | 2 cut(s) | 363, 1152 |
| BsaJI | CCNNGG | 2 cut(s) | 35, 172 |
| BsaWI | WCCGGW | 1 cut(s) | 440 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1103, 1133 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 135, 1070, 1286 |
| Bse1I | ACTGG | 2 cut(s) | 859, 1095 |
| Bse3DI | GCAATG | 2 cut(s) | 1269, 1339 |
| Bse8I | GATNNNNATC | 2 cut(s) | 363, 1152 |
| BseBI | CCWGG | 3 cut(s) | 354, 552, 1323 |
| BseDI | CCNNGG | 2 cut(s) | 35, 172 |
| BseGI | GGATG | 2 cut(s) | 1153, 1153 |
| BseJI | GATNNNNATC | 2 cut(s) | 363, 1152 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 135, 1070, 1286 |
| BseMI | GCAATG | 2 cut(s) | 1269, 1339 |
| BseMII | CTCAG | 2 cut(s) | 416, 784 |
| BseNI | ACTGG | 2 cut(s) | 859, 1095 |
| BseRI | GAGGAG | 1 cut(s) | 1245 |
| BseSI | GKGCMC | 2 cut(s) | 71, 866 |
| BsgI | GTGCAG | 1 cut(s) | 1103 |
| Bsh1236I | CGCG | 2 cut(s) | 898, 1103 |
| BshFI | GGCC | 5 cut(s) | 305, 592, 611, 886, 905 |
| BshNI | GGYRCC | 1 cut(s) | 125 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1116 |
| BsiSI | CCGG | 3 cut(s) | 80, 306, 441 |
| BslFI | GGGAC | 6 cut(s) | 162, 511, 1087, 1141, 1262, 1419 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 135, 1070, 1286 |
| BsmAI | GTCTC | 3 cut(s) | 421, 773, 847 |
| BsmBI | CGTCTC | 1 cut(s) | 847 |
| BsmFI | GGGAC | 6 cut(s) | 162, 511, 1087, 1141, 1262, 1419 |
| BsnI | GGCC | 5 cut(s) | 305, 592, 611, 886, 905 |
| Bsp1286I | GDGCHC | 3 cut(s) | 71, 866, 1116 |
| Bsp143I | GATC | 5 cut(s) | 102, 157, 358, 718, 1249 |
| Bsp19I | CCATGG | 2 cut(s) | 35, 172 |
| BspACI | CCGC | 4 cut(s) | 612, 906, 1010, 1046 |
| BspANI | GGCC | 5 cut(s) | 305, 592, 611, 886, 905 |
| BspCNI | CTCAG | 2 cut(s) | 417, 783 |
| BspFNI | CGCG | 2 cut(s) | 898, 1103 |
| BspLI | GGNNCC | 7 cut(s) | 85, 127, 178, 281, 315, 1227, 1407 |
| BspMI | ACCTGC | 1 cut(s) | 1075 |
| BspOI | GCTAGC | 1 cut(s) | 510 |
| BspPI | GGATC | 2 cut(s) | 165, 1244 |
| BspT107I | GGYRCC | 1 cut(s) | 125 |
| BsrDI | GCAATG | 2 cut(s) | 1269, 1339 |
| BsrI | ACTGG | 2 cut(s) | 859, 1095 |
| BssECI | CCNNGG | 2 cut(s) | 35, 172 |
| BssMI | GATC | 5 cut(s) | 102, 157, 358, 718, 1249 |
| BssSI | CACGAG | 1 cut(s) | 1115 |
| BssT1I | CCWWGG | 2 cut(s) | 35, 172 |
| Bst2BI | CACGAG | 1 cut(s) | 1115 |
| Bst2UI | CCWGG | 3 cut(s) | 354, 552, 1323 |
| Bst4CI | ACNGT | 8 cut(s) | 66, 149, 169, 490, 619, 841, 1108, 1178 |
| Bst6I | CTCTTC | 2 cut(s) | 303, 1263 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1042 |
| BstC8I | GCNNGC | 3 cut(s) | 8, 141, 508 |
| BstDEI | CTNAG | 2 cut(s) | 425, 770 |
| BstDSI | CCRYGG | 2 cut(s) | 35, 172 |
| BstF5I | GGATG | 2 cut(s) | 1153, 1153 |
| BstFNI | CGCG | 2 cut(s) | 898, 1103 |
| BstH2I | RGCGCY | 1 cut(s) | 636 |
| BstHHI | GCGC | 3 cut(s) | 22, 635, 1036 |
| BstKTI | GATC | 5 cut(s) | 105, 160, 361, 721, 1252 |
| BstMAI | GTCTC | 3 cut(s) | 421, 773, 847 |
| BstMBI | GATC | 5 cut(s) | 102, 157, 358, 718, 1249 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1042 |
| BstNI | CCWGG | 3 cut(s) | 354, 552, 1323 |
| BstNSI | RCATGY | 1 cut(s) | 143 |
| BstSCI | CCNGG | 4 cut(s) | 79, 352, 550, 1321 |
| BstSFI | CTRYAG | 1 cut(s) | 615 |
| BstSLI | GKGCMC | 2 cut(s) | 71, 866 |
| BstUI | CGCG | 2 cut(s) | 898, 1103 |
| BsuI | GTATCC | 2 cut(s) | 375, 1369 |
| BsuRI | GGCC | 5 cut(s) | 305, 592, 611, 886, 905 |
| BtgI | CCRYGG | 2 cut(s) | 35, 172 |
| BtgZI | GCGATG | 1 cut(s) | 454 |
| BtsCI | GGATG | 2 cut(s) | 1153, 1153 |
| BtsIMutI | CAGTG | 3 cut(s) | 71, 154, 866 |
| BveI | ACCTGC | 1 cut(s) | 1075 |
| Cac8I | GCNNGC | 3 cut(s) | 8, 141, 508 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1090 |
| CfoI | GCGC | 3 cut(s) | 22, 635, 1036 |
| Cfr13I | GGNCC | 6 cut(s) | 47, 176, 638, 884, 1225, 1406 |
| CseI | GACGC | 2 cut(s) | 338, 887 |
| CsiI | ACCWGGT | 1 cut(s) | 550 |
| Csp6I | GTAC | 4 cut(s) | 1039, 1051, 1088, 1096 |
| CviQI | GTAC | 4 cut(s) | 1039, 1051, 1088, 1096 |
| DdeI | CTNAG | 2 cut(s) | 425, 770 |
| DpnI | GATC | 5 cut(s) | 104, 159, 360, 720, 1251 |
| DpnII | GATC | 5 cut(s) | 102, 157, 358, 718, 1249 |
| DraIII | CACNNNGTG | 1 cut(s) | 66 |
| EaeI | YGGCCR | 2 cut(s) | 609, 903 |
| Eam1104I | CTCTTC | 2 cut(s) | 303, 1263 |
| EarI | CTCTTC | 2 cut(s) | 303, 1263 |
| Ecl136II | GAGCTC | 1 cut(s) | 1114 |
| Eco130I | CCWWGG | 2 cut(s) | 35, 172 |
| Eco147I | AGGCCT | 1 cut(s) | 592 |
| Eco24I | GRGCYC | 1 cut(s) | 1116 |
| Eco32I | GATATC | 1 cut(s) | 32 |
| Eco47I | GGWCC | 5 cut(s) | 47, 176, 638, 1225, 1406 |
| Eco53kI | GAGCTC | 1 cut(s) | 1114 |
| Eco57I | CTGAAG | 2 cut(s) | 284, 1040 |
| EcoICRI | GAGCTC | 1 cut(s) | 1114 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1225, 1406 |
| EcoRII | CCWGG | 3 cut(s) | 352, 550, 1321 |
| EcoRV | GATATC | 1 cut(s) | 32 |
| EcoT14I | CCWWGG | 2 cut(s) | 35, 172 |
| EcoT22I | ATGCAT | 3 cut(s) | 748, 1164, 1341 |
| EcoT38I | GRGCYC | 1 cut(s) | 1116 |
| ErhI | CCWWGG | 2 cut(s) | 35, 172 |
| Esp3I | CGTCTC | 1 cut(s) | 847 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 114, 146 |
| FaqI | GGGAC | 6 cut(s) | 162, 511, 1087, 1141, 1262, 1419 |
| FauI | CCCGC | 1 cut(s) | 1017 |
| FauNDI | CATATG | 1 cut(s) | 1359 |
| FblI | GTMKAC | 1 cut(s) | 621 |
| Fnu4HI | GCNGC | 3 cut(s) | 612, 906, 1046 |
| FokI | GGATG | 2 cut(s) | 1140, 1160 |
| FriOI | GRGCYC | 1 cut(s) | 1116 |
| Fsp4HI | GCNGC | 3 cut(s) | 612, 906, 1046 |
| FspBI | CTAG | 3 cut(s) | 507, 909, 939 |
| FspI | TGCGCA | 1 cut(s) | 21 |
| GlaI | GCGC | 3 cut(s) | 21, 634, 1035 |
| GluI | GCNGC | 3 cut(s) | 612, 906, 1046 |
| GsuI | CTGGAG | 2 cut(s) | 1112, 1344 |
| HaeII | RGCGCY | 1 cut(s) | 636 |
| HaeIII | GGCC | 5 cut(s) | 305, 592, 611, 886, 905 |
| HapII | CCGG | 3 cut(s) | 80, 306, 441 |
| HgaI | GACGC | 2 cut(s) | 338, 887 |
| HhaI | GCGC | 3 cut(s) | 22, 635, 1036 |
| Hin6I | GCGC | 3 cut(s) | 20, 633, 1034 |
| HinP1I | GCGC | 3 cut(s) | 20, 633, 1034 |
| HincII | GTYRAC | 3 cut(s) | 350, 850, 976 |
| HindII | GTYRAC | 3 cut(s) | 350, 850, 976 |
| HindIII | AAGCTT | 1 cut(s) | 957 |
| HinfI | GANTC | 3 cut(s) | 454, 679, 1305 |
| HpaII | CCGG | 3 cut(s) | 80, 306, 441 |
| HphI | GGTGA | 4 cut(s) | 85, 406, 532, 540 |
| Hpy166II | GTNNAC | 8 cut(s) | 93, 350, 622, 850, 916, 934, 976, 1293 |
| Hpy188I | TCNGA | 6 cut(s) | 43, 328, 382, 588, 1059, 1304 |
| Hpy188III | TCNNGA | 3 cut(s) | 716, 772, 1349 |
| Hpy8I | GTNNAC | 8 cut(s) | 93, 350, 622, 850, 916, 934, 976, 1293 |
| Hpy99I | CGWCG | 1 cut(s) | 332 |
| HpyAV | CCTTC | 4 cut(s) | 116, 259, 705, 1064 |
| HpyCH4III | ACNGT | 8 cut(s) | 66, 149, 169, 490, 619, 841, 1108, 1178 |
| HpyCH4IV | ACGT | 2 cut(s) | 804, 854 |
| HpyCH4V | TGCA | 6 cut(s) | 233, 448, 746, 1084, 1162, 1339 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1042 |
| HpyF3I | CTNAG | 2 cut(s) | 425, 770 |
| HpySE526I | ACGT | 2 cut(s) | 804, 854 |
| HspAI | GCGC | 3 cut(s) | 20, 633, 1034 |
| Kzo9I | GATC | 5 cut(s) | 102, 157, 358, 718, 1249 |
| LmnI | GCTCC | 4 cut(s) | 83, 579, 774, 1111 |
| LweI | GCATC | 3 cut(s) | 493, 755, 1171 |
| MabI | ACCWGGT | 1 cut(s) | 550 |
| MaeI | CTAG | 3 cut(s) | 507, 909, 939 |
| MaeII | ACGT | 2 cut(s) | 804, 854 |
| MaeIII | GTNAC | 4 cut(s) | 484, 538, 686, 1172 |
| MalI | GATC | 5 cut(s) | 104, 159, 360, 720, 1251 |
| MboI | GATC | 5 cut(s) | 102, 157, 358, 718, 1249 |
| MboII | GAAGA | 5 cut(s) | 290, 690, 713, 1157, 1250 |
| MhlI | GDGCHC | 3 cut(s) | 71, 866, 1116 |
| MluCI | AATT | 6 cut(s) | 72, 237, 816, 871, 1003, 1132 |
| MluI | ACGCGT | 1 cut(s) | 896 |
| MmeI | TCCRAC | 3 cut(s) | 21, 351, 1171 |
| MnlI | CCTC | 9 cut(s) | 112, 237, 302, 582, 620, 1064, 1263, 1266, 1437 |
| Mph1103I | ATGCAT | 3 cut(s) | 748, 1164, 1341 |
| MseI | TTAA | 1 cut(s) | 1023 |
| MslI | CAYNNNNRTG | 2 cut(s) | 759, 1167 |
| MspA1I | CMGCKG | 1 cut(s) | 1048 |
| MspI | CCGG | 3 cut(s) | 80, 306, 441 |
| MspR9I | CCNGG | 4 cut(s) | 81, 354, 552, 1323 |
| MvaI | CCWGG | 3 cut(s) | 354, 552, 1323 |
| MvnI | CGCG | 2 cut(s) | 898, 1103 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1042 |
| NciI | CCSGG | 1 cut(s) | 81 |
| NcoI | CCATGG | 2 cut(s) | 35, 172 |
| NdeI | CATATG | 1 cut(s) | 1359 |
| NdeII | GATC | 5 cut(s) | 102, 157, 358, 718, 1249 |
| NheI | GCTAGC | 1 cut(s) | 506 |
| NlaIV | GGNNCC | 7 cut(s) | 85, 127, 178, 281, 315, 1227, 1407 |
| NmuCI | GTSAC | 1 cut(s) | 538 |
| NsbI | TGCGCA | 1 cut(s) | 21 |
| NsiI | ATGCAT | 3 cut(s) | 748, 1164, 1341 |
| NspI | RCATGY | 1 cut(s) | 143 |
| PaeI | GCATGC | 1 cut(s) | 143 |
| PceI | AGGCCT | 1 cut(s) | 592 |
| PfeI | GAWTC | 3 cut(s) | 454, 679, 1305 |
| PfoI | TCCNGGA | 1 cut(s) | 1321 |
| PkrI | GCNGC | 3 cut(s) | 613, 907, 1047 |
| PpuMI | RGGWCCY | 2 cut(s) | 1225, 1406 |
| Psp124BI | GAGCTC | 1 cut(s) | 1116 |
| Psp5II | RGGWCCY | 2 cut(s) | 1225, 1406 |
| Psp6I | CCWGG | 3 cut(s) | 352, 550, 1321 |
| PspGI | CCWGG | 3 cut(s) | 352, 550, 1321 |
| PspN4I | GGNNCC | 7 cut(s) | 85, 127, 178, 281, 315, 1227, 1407 |
| PspPI | GGNCC | 6 cut(s) | 47, 176, 638, 884, 1225, 1406 |
| PspPPI | RGGWCCY | 2 cut(s) | 1225, 1406 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 194, 226 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1090 |
| RsaI | GTAC | 4 cut(s) | 1040, 1052, 1089, 1097 |
| RsaNI | GTAC | 4 cut(s) | 1039, 1051, 1088, 1096 |
| RseI | CAYNNNNRTG | 2 cut(s) | 759, 1167 |
| SacI | GAGCTC | 1 cut(s) | 1116 |
| SaqAI | TTAA | 1 cut(s) | 1023 |
| SatI | GCNGC | 3 cut(s) | 612, 906, 1046 |
| Sau3AI | GATC | 5 cut(s) | 102, 157, 358, 718, 1249 |
| Sau96I | GGNCC | 6 cut(s) | 47, 176, 638, 884, 1225, 1406 |
| ScaI | AGTACT | 1 cut(s) | 1040 |
| ScrFI | CCNGG | 4 cut(s) | 81, 354, 552, 1323 |
| SduI | GDGCHC | 3 cut(s) | 71, 866, 1116 |
| SexAI | ACCWGGT | 1 cut(s) | 550 |
| SfaNI | GCATC | 3 cut(s) | 493, 755, 1171 |
| SfcI | CTRYAG | 1 cut(s) | 615 |
| SinI | GGWCC | 5 cut(s) | 47, 176, 638, 1225, 1406 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 759, 1167 |
| SphI | GCATGC | 1 cut(s) | 143 |
| Sse9I | AATT | 6 cut(s) | 72, 237, 816, 871, 1003, 1132 |
| SseBI | AGGCCT | 1 cut(s) | 592 |
| SsiI | CCGC | 4 cut(s) | 612, 906, 1010, 1046 |
| SspMI | CTAG | 3 cut(s) | 507, 909, 939 |
| SstI | GAGCTC | 1 cut(s) | 1116 |
| StuI | AGGCCT | 1 cut(s) | 592 |
| StyD4I | CCNGG | 4 cut(s) | 79, 352, 550, 1321 |
| StyI | CCWWGG | 2 cut(s) | 35, 172 |
| TaaI | ACNGT | 8 cut(s) | 66, 149, 169, 490, 619, 841, 1108, 1178 |
| TaiI | ACGT | 2 cut(s) | 807, 857 |
| TasI | AATT | 6 cut(s) | 72, 237, 816, 871, 1003, 1132 |
| TatI | WGTACW | 2 cut(s) | 1038, 1095 |
| TauI | GCSGC | 3 cut(s) | 614, 908, 1048 |
| TfiI | GAWTC | 3 cut(s) | 454, 679, 1305 |
| Tru1I | TTAA | 1 cut(s) | 1023 |
| Tru9I | TTAA | 1 cut(s) | 1023 |
| TscAI | CASTG | 3 cut(s) | 71, 154, 866 |
| TseFI | GTSAC | 1 cut(s) | 538 |
| Tsp45I | GTSAC | 1 cut(s) | 538 |
| TspDTI | ATGAA | 4 cut(s) | 743, 864, 1157, 1375 |
| TspGWI | ACGGA | 3 cut(s) | 60, 639, 835 |
| TspRI | CASTG | 3 cut(s) | 71, 154, 866 |
| VpaK11BI | GGWCC | 5 cut(s) | 47, 176, 638, 1225, 1406 |
| XapI | RAATTY | 2 cut(s) | 237, 1003 |
| XceI | RCATGY | 1 cut(s) | 143 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 33 |
| XmiI | GTMKAC | 1 cut(s) | 621 |
| XspI | CTAG | 3 cut(s) | 507, 909, 939 |
| ZrmI | AGTACT | 1 cut(s) | 1040 |
| Zsp2I | ATGCAT | 3 cut(s) | 748, 1164, 1341 |