Lignin degradation and detoxification of lignin-derived products
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 320 |
| AccI | GTMKAC | 1 cut(s) | 31 |
| AccII | CGCG | 1 cut(s) | 1096 |
| AccIII | TCCGGA | 1 cut(s) | 500 |
| AciI | CCGC | 2 cut(s) | 807, 1134 |
| AclWI | GGATC | 1 cut(s) | 360 |
| AcoI | YGGCCR | 2 cut(s) | 109, 804 |
| AcsI | RAATTY | 1 cut(s) | 432 |
| AcyI | GRCGYC | 1 cut(s) | 525 |
| AdeI | CACNNNGTG | 1 cut(s) | 261 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 118, 330 |
| AflIII | ACRYGT | 2 cut(s) | 1050, 1094 |
| AgsI | TTSAA | 4 cut(s) | 272, 497, 586, 900 |
| AjnI | CCWGG | 3 cut(s) | 274, 547, 745 |
| AluBI | AGCT | 4 cut(s) | 478, 705, 975, 1125 |
| AluI | AGCT | 4 cut(s) | 478, 705, 975, 1125 |
| Alw26I | GTCTC | 5 cut(s) | 67, 141, 572, 616, 971 |
| AlwI | GGATC | 1 cut(s) | 360 |
| Aor13HI | TCCGGA | 1 cut(s) | 500 |
| AoxI | GGCC | 6 cut(s) | 109, 122, 279, 785, 804, 1082 |
| ApeKI | GCWGC | 2 cut(s) | 81, 1103 |
| ApoI | RAATTY | 1 cut(s) | 432 |
| AspLEI | GCGC | 1 cut(s) | 1079 |
| AspS9I | GGNCC | 6 cut(s) | 122, 242, 279, 371, 508, 1082 |
| AsuC2I | CCSGG | 2 cut(s) | 120, 1081 |
| AsuHPI | GGTGA | 2 cut(s) | 727, 735 |
| AsuNHI | GCTAGC | 1 cut(s) | 701 |
| AvaII | GGWCC | 3 cut(s) | 242, 371, 508 |
| BaeGI | GKGCMC | 2 cut(s) | 266, 1064 |
| BalI | TGGCCA | 1 cut(s) | 111 |
| BanI | GGYRCC | 1 cut(s) | 320 |
| BbvI | GCAGC | 2 cut(s) | 93, 1090 |
| BccI | CCATC | 5 cut(s) | 383, 586, 671, 746, 1046 |
| BciT130I | CCWGG | 3 cut(s) | 276, 549, 747 |
| BciVI | GTATCC | 1 cut(s) | 570 |
| BcnI | CCSGG | 2 cut(s) | 120, 1081 |
| BcoDI | GTCTC | 5 cut(s) | 67, 141, 572, 616, 971 |
| BfaI | CTAG | 2 cut(s) | 702, 1107 |
| BfmI | CTRYAG | 2 cut(s) | 79, 810 |
| BfuI | GTATCC | 1 cut(s) | 570 |
| BisI | GCNGC | 3 cut(s) | 82, 807, 1104 |
| BlsI | GCNGC | 3 cut(s) | 83, 808, 1105 |
| Bme1390I | CCNGG | 5 cut(s) | 120, 276, 549, 747, 1081 |
| Bme18I | GGWCC | 3 cut(s) | 242, 371, 508 |
| BmgT120I | GGNCC | 6 cut(s) | 122, 242, 279, 371, 508, 1082 |
| BmiI | GGNNCC | 6 cut(s) | 123, 280, 322, 373, 509, 510 |
| BmrFI | CCNGG | 5 cut(s) | 120, 276, 549, 747, 1081 |
| BmsI | GCATC | 2 cut(s) | 688, 953 |
| BmtI | GCTAGC | 1 cut(s) | 705 |
| BpuMI | CCSGG | 2 cut(s) | 120, 1081 |
| BsaBI | GATNNNNATC | 1 cut(s) | 558 |
| BsaHI | GRCGYC | 1 cut(s) | 525 |
| BsaJI | CCNNGG | 4 cut(s) | 119, 230, 275, 367 |
| BsaWI | WCCGGW | 2 cut(s) | 500, 635 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 118, 330 |
| Bse1I | ACTGG | 3 cut(s) | 112, 206, 1057 |
| Bse8I | GATNNNNATC | 1 cut(s) | 558 |
| BseAI | TCCGGA | 1 cut(s) | 500 |
| BseBI | CCWGG | 3 cut(s) | 276, 549, 747 |
| BseDI | CCNNGG | 4 cut(s) | 119, 230, 275, 367 |
| BseJI | GATNNNNATC | 1 cut(s) | 558 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 118, 330 |
| BseMII | CTCAG | 2 cut(s) | 611, 982 |
| BseNI | ACTGG | 3 cut(s) | 112, 206, 1057 |
| BseSI | GKGCMC | 2 cut(s) | 266, 1064 |
| BseXI | GCAGC | 2 cut(s) | 93, 1090 |
| Bsh1236I | CGCG | 1 cut(s) | 1096 |
| BshFI | GGCC | 6 cut(s) | 111, 124, 281, 787, 806, 1084 |
| BshNI | GGYRCC | 1 cut(s) | 320 |
| BsiSI | CCGG | 4 cut(s) | 119, 501, 636, 1080 |
| BslFI | GGGAC | 4 cut(s) | 357, 521, 706, 1105 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 118, 330 |
| BsmAI | GTCTC | 5 cut(s) | 67, 141, 572, 616, 971 |
| BsmBI | CGTCTC | 1 cut(s) | 572 |
| BsmFI | GGGAC | 4 cut(s) | 357, 521, 706, 1105 |
| BsnI | GGCC | 6 cut(s) | 111, 124, 281, 787, 806, 1084 |
| Bsp1286I | GDGCHC | 2 cut(s) | 266, 1064 |
| Bsp13I | TCCGGA | 1 cut(s) | 500 |
| Bsp143I | GATC | 3 cut(s) | 297, 352, 553 |
| Bsp19I | CCATGG | 2 cut(s) | 230, 367 |
| BspACI | CCGC | 2 cut(s) | 807, 1134 |
| BspANI | GGCC | 6 cut(s) | 111, 124, 281, 787, 806, 1084 |
| BspCNI | CTCAG | 2 cut(s) | 612, 981 |
| BspEI | TCCGGA | 1 cut(s) | 500 |
| BspFNI | CGCG | 1 cut(s) | 1096 |
| BspLI | GGNNCC | 6 cut(s) | 123, 280, 322, 373, 509, 510 |
| BspMAI | CTGCAG | 1 cut(s) | 83 |
| BspOI | GCTAGC | 1 cut(s) | 705 |
| BspPI | GGATC | 1 cut(s) | 360 |
| BspT107I | GGYRCC | 1 cut(s) | 320 |
| BsrI | ACTGG | 3 cut(s) | 112, 206, 1057 |
| BssECI | CCNNGG | 4 cut(s) | 119, 230, 275, 367 |
| BssMI | GATC | 3 cut(s) | 297, 352, 553 |
| BssNAI | GTATAC | 1 cut(s) | 32 |
| BssNI | GRCGYC | 1 cut(s) | 525 |
| BssT1I | CCWWGG | 2 cut(s) | 230, 367 |
| Bst1107I | GTATAC | 1 cut(s) | 32 |
| Bst2UI | CCWGG | 3 cut(s) | 276, 549, 747 |
| Bst4CI | ACNGT | 5 cut(s) | 103, 261, 344, 364, 685 |
| BstACI | GRCGYC | 1 cut(s) | 525 |
| BstC8I | GCNNGC | 3 cut(s) | 44, 336, 703 |
| BstDEI | CTNAG | 2 cut(s) | 620, 968 |
| BstDSI | CCRYGG | 2 cut(s) | 230, 367 |
| BstFNI | CGCG | 1 cut(s) | 1096 |
| BstHHI | GCGC | 1 cut(s) | 1079 |
| BstKTI | GATC | 3 cut(s) | 300, 355, 556 |
| BstMAI | GTCTC | 5 cut(s) | 67, 141, 572, 616, 971 |
| BstMBI | GATC | 3 cut(s) | 297, 352, 553 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 812 |
| BstNI | CCWGG | 3 cut(s) | 276, 549, 747 |
| BstNSI | RCATGY | 2 cut(s) | 46, 338 |
| BstSCI | CCNGG | 5 cut(s) | 118, 274, 547, 745, 1079 |
| BstSFI | CTRYAG | 2 cut(s) | 79, 810 |
| BstSLI | GKGCMC | 2 cut(s) | 266, 1064 |
| BstUI | CGCG | 1 cut(s) | 1096 |
| BstV1I | GCAGC | 2 cut(s) | 93, 1090 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 206 |
| BstZ17I | GTATAC | 1 cut(s) | 32 |
| BsuI | GTATCC | 1 cut(s) | 570 |
| BsuRI | GGCC | 6 cut(s) | 111, 124, 281, 787, 806, 1084 |
| BtgI | CCRYGG | 2 cut(s) | 230, 367 |
| BtgZI | GCGATG | 1 cut(s) | 649 |
| BtsIMutI | CAGTG | 4 cut(s) | 199, 266, 349, 1064 |
| Cac8I | GCNNGC | 3 cut(s) | 44, 336, 703 |
| CfoI | GCGC | 1 cut(s) | 1079 |
| Cfr13I | GGNCC | 6 cut(s) | 122, 242, 279, 371, 508, 1082 |
| CseI | GACGC | 3 cut(s) | 533, 1085, 1102 |
| CsiI | ACCWGGT | 1 cut(s) | 745 |
| DdeI | CTNAG | 2 cut(s) | 620, 968 |
| DpnI | GATC | 3 cut(s) | 299, 354, 555 |
| DpnII | GATC | 3 cut(s) | 297, 352, 553 |
| DraIII | CACNNNGTG | 1 cut(s) | 261 |
| EaeI | YGGCCR | 2 cut(s) | 109, 804 |
| Eco130I | CCWWGG | 2 cut(s) | 230, 367 |
| Eco147I | AGGCCT | 1 cut(s) | 787 |
| Eco32I | GATATC | 1 cut(s) | 227 |
| Eco47I | GGWCC | 3 cut(s) | 242, 371, 508 |
| EcoO109I | RGGNCCY | 1 cut(s) | 508 |
| EcoRII | CCWGG | 3 cut(s) | 274, 547, 745 |
| EcoRV | GATATC | 1 cut(s) | 227 |
| EcoT14I | CCWWGG | 2 cut(s) | 230, 367 |
| EcoT22I | ATGCAT | 1 cut(s) | 946 |
| ErhI | CCWWGG | 2 cut(s) | 230, 367 |
| Esp3I | CGTCTC | 1 cut(s) | 572 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 80, 112, 309, 341 |
| FaqI | GGGAC | 4 cut(s) | 357, 521, 706, 1105 |
| FauI | CCCGC | 1 cut(s) | 1141 |
| FblI | GTMKAC | 1 cut(s) | 31 |
| Fnu4HI | GCNGC | 3 cut(s) | 82, 807, 1104 |
| Fsp4HI | GCNGC | 3 cut(s) | 82, 807, 1104 |
| FspBI | CTAG | 2 cut(s) | 702, 1107 |
| GlaI | GCGC | 1 cut(s) | 1078 |
| GluI | GCNGC | 3 cut(s) | 82, 807, 1104 |
| HaeIII | GGCC | 6 cut(s) | 111, 124, 281, 787, 806, 1084 |
| HapII | CCGG | 4 cut(s) | 119, 501, 636, 1080 |
| HgaI | GACGC | 3 cut(s) | 533, 1085, 1102 |
| HhaI | GCGC | 1 cut(s) | 1079 |
| Hin1I | GRCGYC | 1 cut(s) | 525 |
| Hin6I | GCGC | 1 cut(s) | 1077 |
| HinP1I | GCGC | 1 cut(s) | 1077 |
| HincII | GTYRAC | 2 cut(s) | 545, 1048 |
| HindII | GTYRAC | 2 cut(s) | 545, 1048 |
| HindIII | AAGCTT | 1 cut(s) | 476 |
| HinfI | GANTC | 3 cut(s) | 75, 649, 877 |
| HpaII | CCGG | 4 cut(s) | 119, 501, 636, 1080 |
| HphI | GGTGA | 2 cut(s) | 727, 735 |
| Hpy166II | GTNNAC | 3 cut(s) | 32, 545, 1048 |
| Hpy188I | TCNGA | 4 cut(s) | 238, 523, 577, 783 |
| Hpy188III | TCNNGA | 4 cut(s) | 97, 307, 501, 970 |
| Hpy8I | GTNNAC | 3 cut(s) | 32, 545, 1048 |
| Hpy99I | CGWCG | 3 cut(s) | 164, 527, 824 |
| HpyAV | CCTTC | 4 cut(s) | 304, 311, 454, 903 |
| HpyCH4III | ACNGT | 5 cut(s) | 103, 261, 344, 364, 685 |
| HpyCH4IV | ACGT | 4 cut(s) | 581, 819, 1002, 1052 |
| HpyCH4V | TGCA | 6 cut(s) | 24, 42, 81, 428, 643, 944 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 812 |
| HpyF3I | CTNAG | 2 cut(s) | 620, 968 |
| HpySE526I | ACGT | 4 cut(s) | 581, 819, 1002, 1052 |
| Hsp92I | GRCGYC | 1 cut(s) | 525 |
| HspAI | GCGC | 1 cut(s) | 1077 |
| KflI | GGGWCCC | 1 cut(s) | 508 |
| Kpn2I | TCCGGA | 1 cut(s) | 500 |
| Kzo9I | GATC | 3 cut(s) | 297, 352, 553 |
| LmnI | GCTCC | 3 cut(s) | 41, 774, 972 |
| Lsp1109I | GCAGC | 2 cut(s) | 93, 1090 |
| LweI | GCATC | 2 cut(s) | 688, 953 |
| MabI | ACCWGGT | 1 cut(s) | 745 |
| MaeI | CTAG | 2 cut(s) | 702, 1107 |
| MaeII | ACGT | 4 cut(s) | 581, 819, 1002, 1052 |
| MaeIII | GTNAC | 4 cut(s) | 185, 679, 733, 884 |
| MalI | GATC | 3 cut(s) | 299, 354, 555 |
| MboI | GATC | 3 cut(s) | 297, 352, 553 |
| MboII | GAAGA | 2 cut(s) | 888, 911 |
| MhlI | GDGCHC | 2 cut(s) | 266, 1064 |
| MlsI | TGGCCA | 1 cut(s) | 111 |
| MluCI | AATT | 4 cut(s) | 267, 432, 1014, 1069 |
| MluI | ACGCGT | 1 cut(s) | 1094 |
| MluNI | TGGCCA | 1 cut(s) | 111 |
| MlyI | GAGTC | 1 cut(s) | 69 |
| MmeI | TCCRAC | 2 cut(s) | 216, 546 |
| MnlI | CCTC | 6 cut(s) | 307, 432, 497, 542, 777, 1147 |
| Mox20I | TGGCCA | 1 cut(s) | 111 |
| Mph1103I | ATGCAT | 1 cut(s) | 946 |
| MroI | TCCGGA | 1 cut(s) | 500 |
| MscI | TGGCCA | 1 cut(s) | 111 |
| MseI | TTAA | 1 cut(s) | 171 |
| MslI | CAYNNNNRTG | 2 cut(s) | 204, 957 |
| Msp20I | TGGCCA | 1 cut(s) | 111 |
| MspI | CCGG | 4 cut(s) | 119, 501, 636, 1080 |
| MspR9I | CCNGG | 5 cut(s) | 120, 276, 549, 747, 1081 |
| MvaI | CCWGG | 3 cut(s) | 276, 549, 747 |
| MvnI | CGCG | 1 cut(s) | 1096 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 812 |
| NciI | CCSGG | 2 cut(s) | 120, 1081 |
| NcoI | CCATGG | 2 cut(s) | 230, 367 |
| NdeII | GATC | 3 cut(s) | 297, 352, 553 |
| NheI | GCTAGC | 1 cut(s) | 701 |
| NlaIV | GGNNCC | 6 cut(s) | 123, 280, 322, 373, 509, 510 |
| NmuCI | GTSAC | 1 cut(s) | 733 |
| NsiI | ATGCAT | 1 cut(s) | 946 |
| NspI | RCATGY | 2 cut(s) | 46, 338 |
| PaeI | GCATGC | 2 cut(s) | 46, 338 |
| PceI | AGGCCT | 1 cut(s) | 787 |
| PfeI | GAWTC | 2 cut(s) | 649, 877 |
| PkrI | GCNGC | 3 cut(s) | 83, 808, 1105 |
| PleI | GAGTC | 1 cut(s) | 69 |
| PpsI | GAGTC | 1 cut(s) | 69 |
| PpuMI | RGGWCCY | 1 cut(s) | 508 |
| Psp5II | RGGWCCY | 1 cut(s) | 508 |
| Psp6I | CCWGG | 3 cut(s) | 274, 547, 745 |
| PspGI | CCWGG | 3 cut(s) | 274, 547, 745 |
| PspN4I | GGNNCC | 6 cut(s) | 123, 280, 322, 373, 509, 510 |
| PspPI | GGNCC | 6 cut(s) | 122, 242, 279, 371, 508, 1082 |
| PspPPI | RGGWCCY | 1 cut(s) | 508 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 389, 421 |
| PstI | CTGCAG | 1 cut(s) | 83 |
| RseI | CAYNNNNRTG | 2 cut(s) | 204, 957 |
| SaqAI | TTAA | 1 cut(s) | 171 |
| SatI | GCNGC | 3 cut(s) | 82, 807, 1104 |
| Sau3AI | GATC | 3 cut(s) | 297, 352, 553 |
| Sau96I | GGNCC | 6 cut(s) | 122, 242, 279, 371, 508, 1082 |
| SchI | GAGTC | 1 cut(s) | 69 |
| ScrFI | CCNGG | 5 cut(s) | 120, 276, 549, 747, 1081 |
| SduI | GDGCHC | 2 cut(s) | 266, 1064 |
| SexAI | ACCWGGT | 1 cut(s) | 745 |
| SfaNI | GCATC | 2 cut(s) | 688, 953 |
| SfcI | CTRYAG | 2 cut(s) | 79, 810 |
| SinI | GGWCC | 3 cut(s) | 242, 371, 508 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 204, 957 |
| SphI | GCATGC | 2 cut(s) | 46, 338 |
| Sse9I | AATT | 4 cut(s) | 267, 432, 1014, 1069 |
| SseBI | AGGCCT | 1 cut(s) | 787 |
| SsiI | CCGC | 2 cut(s) | 807, 1134 |
| SspMI | CTAG | 2 cut(s) | 702, 1107 |
| StuI | AGGCCT | 1 cut(s) | 787 |
| StyD4I | CCNGG | 5 cut(s) | 118, 274, 547, 745, 1079 |
| StyI | CCWWGG | 2 cut(s) | 230, 367 |
| TaaI | ACNGT | 5 cut(s) | 103, 261, 344, 364, 685 |
| TaiI | ACGT | 4 cut(s) | 584, 822, 1005, 1055 |
| TaqI | TCGA | 2 cut(s) | 162, 308 |
| TasI | AATT | 4 cut(s) | 267, 432, 1014, 1069 |
| TauI | GCSGC | 1 cut(s) | 809 |
| TfiI | GAWTC | 2 cut(s) | 649, 877 |
| Tru1I | TTAA | 1 cut(s) | 171 |
| Tru9I | TTAA | 1 cut(s) | 171 |
| TscAI | CASTG | 4 cut(s) | 206, 266, 349, 1064 |
| TseFI | GTSAC | 1 cut(s) | 733 |
| TseI | GCWGC | 2 cut(s) | 81, 1103 |
| Tsp45I | GTSAC | 1 cut(s) | 733 |
| TspDTI | ATGAA | 2 cut(s) | 941, 1062 |
| TspGWI | ACGGA | 2 cut(s) | 255, 1033 |
| TspRI | CASTG | 4 cut(s) | 206, 266, 349, 1064 |
| VpaK11BI | GGWCC | 3 cut(s) | 242, 371, 508 |
| XapI | RAATTY | 1 cut(s) | 432 |
| XceI | RCATGY | 2 cut(s) | 46, 338 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 228 |
| XmiI | GTMKAC | 1 cut(s) | 31 |
| XspI | CTAG | 2 cut(s) | 702, 1107 |
| Zsp2I | ATGCAT | 1 cut(s) | 946 |