Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000079.1

Orthogroup ID

OG0000359

Physical Location & Seq

Genomic Coordinates Forward (+)

317650 .. 319034

Gene Structure 1385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000079.1_g000069.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

atgaaggtttccagaattaccctgcatctgcaacttctggggttgttattggctgttaatggcttcctccattgccaagcttggccagctcgttacacttttgtggtggaaaacactccatacaaaagactctgcagcacaaagaacatcttgactataaatgaccagtttccgggaccaacattgtacgttcacaaaggagatactatcatcgtcgatgtctttaacaaaggcaatcgtaacattagtctccactggcatggtgttgcgcaaccaagatatccatggtcggacggaccagagtatatcacacattgcccaattcaaccaggggccaagttcacccaaaagatcattttctcgatggaggaaggcaccctttggtggcatgctcacagtgaatgggatcgtgccacagtccatggtcccatcatcatataccccaacaagaacaacaaatacccttttgccaagcctcatgcagaaattccaatcatattagagacgttcaagatgatggttgattatggcaaaacctacctactgagactaattaactctggtgtgcaagagattctgtttttcgccatcgccaatcacaaagtcacagttgtagggacagatgctagcaccaaacctttcacaaccgattatgtcacaatctcacctggtcaaaccattgaccttttgctccatgctaatcagaggcctaaccactactacatggccgctacagcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0010023 GO:0010035 GO:0010038 GO:0016491 GO:0016722 GO:0017144 GO:0018130 GO:0018958 GO:0019438 GO:0019748 GO:0042221 GO:0043167 GO:0043169 GO:0044237 GO:0044249 GO:0044550 GO:0046189 GO:0046483 GO:0046688 GO:0046872 GO:0046914 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

246

Amino Acids

28.06

Weight (kDa)

9.02

Isoelectric Point (pI)

35.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48100
fragaria_vesca	FvH4_1g24380 FvH4_2g05800 FvH4_5g30730
malus_domestica	MD01G1234900.v1.1 MD01G1235100.v1.1 MD01G1235200.v1.1 MD07G1307400.v1.1 MD07G1308000.v1.1 MD10G1042300.v1.1 MD10G1042400.v1.1 MD10G1042500.v1.1 MD10G1042700.v1.1
prunus_persica	Prupe.2G325200_v2.0.a1 Prupe.6G242000_v2.0.a1 Prupe.8G046800_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1
pyrus_communis	pycom01g24320 pycom01g24330 pycom07g28020 pycom10g02950 pycom17g03690
rosa_chinensis	RchiOBHm_Chr1g0384031 RchiOBHm_Chr2g0120941 RchiOBHm_Chr2g0120971 RchiOBHm_Chr2g0121051 RchiOBHm_Chr2g0121181 RchiOBHm_Chr2g0121211 RchiOBHm_Chr3g0473931 RchiOBHm_Chr3g0473941 RchiOBHm_Chr6g0257941 RchiOBHm_Chr6g0284781
rosa_laevigata	RLG00000008541 RLG00000014737 RLG00000018604 RLG00000018607 RLG00000018608 RLG00000018610 RLG00000018611 RLG00000018613 RLG00000023967 RLG00000023970 RLG00000026078 RLG00000035183
rosa_multiflora	Rmu_sc0000079.1_g000043 Rmu_sc0000079.1_g000062 Rmu_sc0000079.1_g000069 Rmu_sc0000621.1_g000019 Rmu_sc0000621.1_g000025 Rmu_sc0000621.1_g000041 Rmu_sc0000652.1_g000018 Rmu_sc0002414.1_g000030 Rmu_sc0002414.1_g000033 Rmu_sc0002843.1_g000016 Rmu_sc0005137.1_g000035 Rmu_sc0005139.1_g000021
rosa_roxburghii	Rroxscaffold_2G00122530 Rroxscaffold_2G00122570 Rroxscaffold_2G00122580 Rroxscaffold_2G00122650 Rroxscaffold_4G00277080 Rroxscaffold_6G00407610 Rroxscaffold_6G00407620 Rroxscaffold_7G00209050
rosa_rugosa	Rorug01G0444300 Rorug02G0232700 Rorug02G0232700 Rorug02G0232900 Rorug03G0137100 Rorug05G0565600 Rorug05G0566500
rosa_samantha	Rh1BG427300 Rh1CG440100 Rh2CG278100 Rh2CG278200 Rh2CG278700 Rh2CG278800 Rh2CG279100 Rh2DG314200 Rh2DG314300 Rh2DG314600 Rh3AG187200 Rh3DG211700 Rh3DG211800 Rh5AG356600 Rh6BG078000 Rh6BG078700 Rh6CG073300 Rh6DG070300 Rh6DG190200 Rh6DG274700 Rh7BG365900
rosa_wichuraiana	Rw0G018400 Rw1G040270 Rw2G023160 Rw2G023170 Rw2G023190 Rw2G023200 Rw2G023220 Rw2G023230 Rw3G017140 Rw3G017150 Rw4G012840 Rw6G007580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	270
AccB1I	GGYRCC	1 cut(s)	374
AciI	CCGC	1 cut(s)	729
AclWI	GGATC	1 cut(s)	414
AcoI	YGGCCR	2 cut(s)	83, 726
AcsI	RAATTY	1 cut(s)	486
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	2 cut(s)	172, 384
AgsI	TTSAA	2 cut(s)	326, 511
AjnI	CCWGG	2 cut(s)	328, 667
AleI	CACNNNNGTG	1 cut(s)	101
AluBI	AGCT	2 cut(s)	80, 89
AluI	AGCT	2 cut(s)	80, 89
Alw26I	GTCTC	3 cut(s)	254, 497, 541
AlwI	GGATC	1 cut(s)	414
AoxI	GGCC	4 cut(s)	83, 333, 707, 726
ApeKI	GCWGC	1 cut(s)	135
ApoI	RAATTY	1 cut(s)	486
AspLEI	GCGC	1 cut(s)	271
AspS9I	GGNCC	4 cut(s)	176, 296, 333, 425
AsuC2I	CCSGG	1 cut(s)	174
AsuHPI	GGTGA	2 cut(s)	334, 657
AsuNHI	GCTAGC	1 cut(s)	626
AvaII	GGWCC	3 cut(s)	176, 296, 425
BalI	TGGCCA	1 cut(s)	85
BanI	GGYRCC	1 cut(s)	374
BbvI	GCAGC	1 cut(s)	147
BccI	CCATC	4 cut(s)	358, 437, 511, 596
BciT130I	CCWGG	2 cut(s)	330, 669
BcnI	CCSGG	1 cut(s)	174
BcoDI	GTCTC	3 cut(s)	254, 497, 541
BfaI	CTAG	1 cut(s)	627
BfmI	CTRYAG	2 cut(s)	133, 732
BisI	GCNGC	2 cut(s)	136, 729
BlsI	GCNGC	2 cut(s)	137, 730
Bme1390I	CCNGG	3 cut(s)	174, 330, 669
Bme18I	GGWCC	3 cut(s)	176, 296, 425
BmgT120I	GGNCC	4 cut(s)	176, 296, 333, 425
BmiI	GGNNCC	4 cut(s)	177, 334, 376, 427
BmrFI	CCNGG	3 cut(s)	174, 330, 669
BmsI	GCATC	2 cut(s)	34, 613
BmtI	GCTAGC	1 cut(s)	630
BpuMI	CCSGG	1 cut(s)	174
BsaJI	CCNNGG	3 cut(s)	284, 329, 421
Bsc4I	CCNNNNNNNGG	2 cut(s)	172, 384
Bse1I	ACTGG	2 cut(s)	166, 260
Bse3DI	GCAATG	2 cut(s)	70, 313
BseBI	CCWGG	2 cut(s)	330, 669
BseDI	CCNNGG	3 cut(s)	284, 329, 421
BseLI	CCNNNNNNNGG	2 cut(s)	172, 384
BseMI	GCAATG	2 cut(s)	70, 313
BseMII	CTCAG	1 cut(s)	536
BseNI	ACTGG	2 cut(s)	166, 260
BseXI	GCAGC	1 cut(s)	147
BshFI	GGCC	4 cut(s)	85, 335, 709, 728
BshNI	GGYRCC	1 cut(s)	374
BsiSI	CCGG	1 cut(s)	173
BslFI	GGGAC	3 cut(s)	189, 411, 631
BslI	CCNNNNNNNGG	2 cut(s)	172, 384
BsmAI	GTCTC	3 cut(s)	254, 497, 541
BsmBI	CGTCTC	1 cut(s)	497
BsmFI	GGGAC	3 cut(s)	189, 411, 631
BsnI	GGCC	4 cut(s)	85, 335, 709, 728
Bsp143I	GATC	2 cut(s)	351, 406
Bsp19I	CCATGG	2 cut(s)	284, 421
BspACI	CCGC	1 cut(s)	729
BspANI	GGCC	4 cut(s)	85, 335, 709, 728
BspCNI	CTCAG	1 cut(s)	537
BspLI	GGNNCC	4 cut(s)	177, 334, 376, 427
BspMAI	CTGCAG	1 cut(s)	137
BspOI	GCTAGC	1 cut(s)	630
BspPI	GGATC	1 cut(s)	414
BspT107I	GGYRCC	1 cut(s)	374
BsrDI	GCAATG	2 cut(s)	70, 313
BsrI	ACTGG	2 cut(s)	166, 260
BssECI	CCNNGG	3 cut(s)	284, 329, 421
BssMI	GATC	2 cut(s)	351, 406
BssT1I	CCWWGG	2 cut(s)	284, 421
Bst2UI	CCWGG	2 cut(s)	330, 669
Bst4CI	ACNGT	3 cut(s)	398, 418, 610
BstC8I	GCNNGC	3 cut(s)	87, 390, 628
BstDEI	CTNAG	1 cut(s)	545
BstDSI	CCRYGG	2 cut(s)	284, 421
BstHHI	GCGC	1 cut(s)	271
BstKTI	GATC	2 cut(s)	354, 409
BstMAI	GTCTC	3 cut(s)	254, 497, 541
BstMBI	GATC	2 cut(s)	351, 406
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 734
BstNI	CCWGG	2 cut(s)	330, 669
BstNSI	RCATGY	1 cut(s)	392
BstSCI	CCNGG	3 cut(s)	172, 328, 667
BstSFI	CTRYAG	2 cut(s)	133, 732
BstV1I	GCAGC	1 cut(s)	147
BstXI	CCANNNNNNTGG	1 cut(s)	260
BsuRI	GGCC	4 cut(s)	85, 335, 709, 728
BtgI	CCRYGG	2 cut(s)	284, 421
BtgZI	GCGATG	1 cut(s)	574
BtsIMutI	CAGTG	2 cut(s)	253, 403
Cac8I	GCNNGC	3 cut(s)	87, 390, 628
CfoI	GCGC	1 cut(s)	271
Cfr13I	GGNCC	4 cut(s)	176, 296, 333, 425
CsiI	ACCWGGT	1 cut(s)	667
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	7 cut(s)	260, 285, 389, 422, 479, 695, 724
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	1 cut(s)	545
DpnI	GATC	2 cut(s)	353, 408
DpnII	GATC	2 cut(s)	351, 406
EaeI	YGGCCR	2 cut(s)	83, 726
Eco130I	CCWWGG	2 cut(s)	284, 421
Eco147I	AGGCCT	1 cut(s)	709
Eco32I	GATATC	1 cut(s)	281
Eco47I	GGWCC	3 cut(s)	176, 296, 425
EcoRII	CCWGG	2 cut(s)	328, 667
EcoRV	GATATC	1 cut(s)	281
EcoT14I	CCWWGG	2 cut(s)	284, 421
ErhI	CCWWGG	2 cut(s)	284, 421
Esp3I	CGTCTC	1 cut(s)	497
FaeI	CATG	7 cut(s)	263, 288, 392, 425, 482, 698, 727
FalI	AAGNNNNNCTT	4 cut(s)	134, 166, 363, 395
FaqI	GGGAC	3 cut(s)	189, 411, 631
FatI	CATG	7 cut(s)	259, 284, 388, 421, 478, 694, 723
Fnu4HI	GCNGC	2 cut(s)	136, 729
Fsp4HI	GCNGC	2 cut(s)	136, 729
FspBI	CTAG	1 cut(s)	627
FspI	TGCGCA	1 cut(s)	270
GlaI	GCGC	1 cut(s)	270
GluI	GCNGC	2 cut(s)	136, 729
HaeIII	GGCC	4 cut(s)	85, 335, 709, 728
HapII	CCGG	1 cut(s)	173
HhaI	GCGC	1 cut(s)	271
Hin1II	CATG	7 cut(s)	263, 288, 392, 425, 482, 698, 727
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HindIII	AAGCTT	1 cut(s)	78
HinfI	GANTC	2 cut(s)	129, 574
HpaII	CCGG	1 cut(s)	173
HphI	GGTGA	2 cut(s)	334, 657
Hpy166II	GTNNAC	2 cut(s)	193, 342
Hpy188I	TCNGA	2 cut(s)	292, 705
Hpy188III	TCNNGA	4 cut(s)	12, 151, 361, 511
Hpy8I	GTNNAC	2 cut(s)	193, 342
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	1 cut(s)	365
HpyCH4III	ACNGT	3 cut(s)	398, 418, 610
HpyCH4IV	ACGT	2 cut(s)	189, 506
HpyCH4V	TGCA	5 cut(s)	25, 31, 135, 482, 568
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 734
HpyF3I	CTNAG	1 cut(s)	545
HpySE526I	ACGT	2 cut(s)	189, 506
Hsp92II	CATG	7 cut(s)	263, 288, 392, 425, 482, 698, 727
HspAI	GCGC	1 cut(s)	269
Kzo9I	GATC	2 cut(s)	351, 406
LmnI	GCTCC	1 cut(s)	696
Lsp1109I	GCAGC	1 cut(s)	147
LweI	GCATC	2 cut(s)	34, 613
MabI	ACCWGGT	1 cut(s)	667
MaeI	CTAG	1 cut(s)	627
MaeII	ACGT	2 cut(s)	189, 506
MaeIII	GTNAC	4 cut(s)	92, 239, 604, 655
MalI	GATC	2 cut(s)	353, 408
MboI	GATC	2 cut(s)	351, 406
MlsI	TGGCCA	1 cut(s)	85
MluCI	AATT	4 cut(s)	15, 321, 486, 552
MluNI	TGGCCA	1 cut(s)	85
MlyI	GAGTC	1 cut(s)	123
MmeI	TCCRAC	1 cut(s)	270
MnlI	CCTC	4 cut(s)	77, 361, 486, 699
Mox20I	TGGCCA	1 cut(s)	85
MscI	TGGCCA	1 cut(s)	85
MseI	TTAA	3 cut(s)	57, 225, 555
MslI	CAYNNNNRTG	2 cut(s)	101, 258
Msp20I	TGGCCA	1 cut(s)	85
MspI	CCGG	1 cut(s)	173
MspR9I	CCNGG	3 cut(s)	174, 330, 669
MvaI	CCWGG	2 cut(s)	330, 669
MwoI	GCNNNNNNNGC	2 cut(s)	86, 734
NciI	CCSGG	1 cut(s)	174
NcoI	CCATGG	2 cut(s)	284, 421
NdeII	GATC	2 cut(s)	351, 406
NheI	GCTAGC	1 cut(s)	626
NlaIII	CATG	7 cut(s)	263, 288, 392, 425, 482, 698, 727
NlaIV	GGNNCC	4 cut(s)	177, 334, 376, 427
NmuCI	GTSAC	2 cut(s)	604, 655
NsbI	TGCGCA	1 cut(s)	270
NspI	RCATGY	1 cut(s)	392
OliI	CACNNNNGTG	1 cut(s)	101
PaeI	GCATGC	1 cut(s)	392
PceI	AGGCCT	1 cut(s)	709
PfeI	GAWTC	1 cut(s)	574
PfoI	TCCNGGA	1 cut(s)	172
PkrI	GCNGC	2 cut(s)	137, 730
PleI	GAGTC	1 cut(s)	123
PpsI	GAGTC	1 cut(s)	123
Psp6I	CCWGG	2 cut(s)	328, 667
PspGI	CCWGG	2 cut(s)	328, 667
PspN4I	GGNNCC	4 cut(s)	177, 334, 376, 427
PspPI	GGNCC	4 cut(s)	176, 296, 333, 425
PsrI	GAACNNNNNNTAC	2 cut(s)	443, 475
PstI	CTGCAG	1 cut(s)	137
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
RseI	CAYNNNNRTG	2 cut(s)	101, 258
SaqAI	TTAA	3 cut(s)	57, 225, 555
SatI	GCNGC	2 cut(s)	136, 729
Sau3AI	GATC	2 cut(s)	351, 406
Sau96I	GGNCC	4 cut(s)	176, 296, 333, 425
SchI	GAGTC	1 cut(s)	123
ScrFI	CCNGG	3 cut(s)	174, 330, 669
SexAI	ACCWGGT	1 cut(s)	667
SfaNI	GCATC	2 cut(s)	34, 613
SfcI	CTRYAG	2 cut(s)	133, 732
SinI	GGWCC	3 cut(s)	176, 296, 425
SmiMI	CAYNNNNRTG	2 cut(s)	101, 258
SphI	GCATGC	1 cut(s)	392
Sse9I	AATT	4 cut(s)	15, 321, 486, 552
SseBI	AGGCCT	1 cut(s)	709
SsiI	CCGC	1 cut(s)	729
SspMI	CTAG	1 cut(s)	627
StuI	AGGCCT	1 cut(s)	709
StyD4I	CCNGG	3 cut(s)	172, 328, 667
StyI	CCWWGG	2 cut(s)	284, 421
TaaI	ACNGT	3 cut(s)	398, 418, 610
TaiI	ACGT	2 cut(s)	192, 509
TaqI	TCGA	2 cut(s)	216, 362
TasI	AATT	4 cut(s)	15, 321, 486, 552
TauI	GCSGC	1 cut(s)	731
TfiI	GAWTC	1 cut(s)	574
Tru1I	TTAA	3 cut(s)	57, 225, 555
Tru9I	TTAA	3 cut(s)	57, 225, 555
TscAI	CASTG	2 cut(s)	260, 403
TseFI	GTSAC	2 cut(s)	604, 655
TseI	GCWGC	1 cut(s)	135
Tsp45I	GTSAC	2 cut(s)	604, 655
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	309
TspRI	CASTG	2 cut(s)	260, 403
VpaK11BI	GGWCC	3 cut(s)	176, 296, 425
XapI	RAATTY	1 cut(s)	486
XceI	RCATGY	1 cut(s)	392
XcmI	CCANNNNNNNNNTGG	1 cut(s)	282
XspI	CTAG	1 cut(s)	627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.