Lignin degradation and detoxification of lignin-derived products
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 377 |
| AccIII | TCCGGA | 1 cut(s) | 557 |
| AciI | CCGC | 1 cut(s) | 864 |
| AclWI | GGATC | 1 cut(s) | 417 |
| AcoI | YGGCCR | 3 cut(s) | 86, 166, 861 |
| AcsI | RAATTY | 1 cut(s) | 489 |
| AdeI | CACNNNGTG | 1 cut(s) | 318 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 175, 387 |
| AgsI | TTSAA | 4 cut(s) | 58, 329, 554, 643 |
| AjnI | CCWGG | 3 cut(s) | 331, 604, 802 |
| AleI | CACNNNNGTG | 1 cut(s) | 104 |
| AluBI | AGCT | 4 cut(s) | 83, 92, 535, 762 |
| AluI | AGCT | 4 cut(s) | 83, 92, 535, 762 |
| Alw26I | GTCTC | 4 cut(s) | 124, 198, 629, 673 |
| AlwI | GGATC | 1 cut(s) | 417 |
| Aor13HI | TCCGGA | 1 cut(s) | 557 |
| AoxI | GGCC | 5 cut(s) | 86, 166, 336, 842, 861 |
| ApeKI | GCWGC | 1 cut(s) | 138 |
| ApoI | RAATTY | 1 cut(s) | 489 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 62 |
| AspS9I | GGNCC | 5 cut(s) | 179, 299, 336, 428, 565 |
| AsuC2I | CCSGG | 1 cut(s) | 177 |
| AsuHPI | GGTGA | 3 cut(s) | 337, 784, 792 |
| AsuNHI | GCTAGC | 1 cut(s) | 758 |
| AvaII | GGWCC | 4 cut(s) | 179, 299, 428, 565 |
| BaeGI | GKGCMC | 1 cut(s) | 323 |
| BalI | TGGCCA | 2 cut(s) | 88, 168 |
| BanI | GGYRCC | 1 cut(s) | 377 |
| BauI | CACGAG | 1 cut(s) | 127 |
| BbvI | GCAGC | 1 cut(s) | 150 |
| BccI | CCATC | 5 cut(s) | 440, 514, 643, 728, 803 |
| BciT130I | CCWGG | 3 cut(s) | 333, 606, 804 |
| BciVI | GTATCC | 1 cut(s) | 627 |
| BcnI | CCSGG | 1 cut(s) | 177 |
| BcoDI | GTCTC | 4 cut(s) | 124, 198, 629, 673 |
| BfaI | CTAG | 1 cut(s) | 759 |
| BfmI | CTRYAG | 2 cut(s) | 136, 867 |
| BfuI | GTATCC | 1 cut(s) | 627 |
| BisI | GCNGC | 2 cut(s) | 139, 864 |
| BlsI | GCNGC | 2 cut(s) | 140, 865 |
| Bme1390I | CCNGG | 4 cut(s) | 177, 333, 606, 804 |
| Bme18I | GGWCC | 4 cut(s) | 179, 299, 428, 565 |
| BmgT120I | GGNCC | 5 cut(s) | 179, 299, 336, 428, 565 |
| BmiI | GGNNCC | 6 cut(s) | 180, 337, 379, 430, 566, 567 |
| BmrFI | CCNGG | 4 cut(s) | 177, 333, 606, 804 |
| BmsI | GCATC | 2 cut(s) | 34, 745 |
| BmtI | GCTAGC | 1 cut(s) | 762 |
| BpuMI | CCSGG | 1 cut(s) | 177 |
| BsaBI | GATNNNNATC | 1 cut(s) | 615 |
| BsaJI | CCNNGG | 3 cut(s) | 287, 332, 424 |
| BsaWI | WCCGGW | 2 cut(s) | 557, 692 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 175, 387 |
| Bse1I | ACTGG | 2 cut(s) | 169, 263 |
| Bse3DI | GCAATG | 1 cut(s) | 73 |
| Bse8I | GATNNNNATC | 1 cut(s) | 615 |
| BseAI | TCCGGA | 1 cut(s) | 557 |
| BseBI | CCWGG | 3 cut(s) | 333, 606, 804 |
| BseDI | CCNNGG | 3 cut(s) | 287, 332, 424 |
| BseJI | GATNNNNATC | 1 cut(s) | 615 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 175, 387 |
| BseMI | GCAATG | 1 cut(s) | 73 |
| BseMII | CTCAG | 1 cut(s) | 668 |
| BseNI | ACTGG | 2 cut(s) | 169, 263 |
| BseRI | GAGGAG | 2 cut(s) | 59, 383 |
| BseSI | GKGCMC | 1 cut(s) | 323 |
| BseXI | GCAGC | 1 cut(s) | 150 |
| BshFI | GGCC | 5 cut(s) | 88, 168, 338, 844, 863 |
| BshNI | GGYRCC | 1 cut(s) | 377 |
| BsiSI | CCGG | 3 cut(s) | 176, 558, 693 |
| BslFI | GGGAC | 4 cut(s) | 192, 414, 578, 763 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 175, 387 |
| BsmAI | GTCTC | 4 cut(s) | 124, 198, 629, 673 |
| BsmBI | CGTCTC | 1 cut(s) | 629 |
| BsmFI | GGGAC | 4 cut(s) | 192, 414, 578, 763 |
| BsnI | GGCC | 5 cut(s) | 88, 168, 338, 844, 863 |
| Bsp1286I | GDGCHC | 1 cut(s) | 323 |
| Bsp13I | TCCGGA | 1 cut(s) | 557 |
| Bsp143I | GATC | 3 cut(s) | 354, 409, 610 |
| Bsp19I | CCATGG | 2 cut(s) | 287, 424 |
| BspACI | CCGC | 1 cut(s) | 864 |
| BspANI | GGCC | 5 cut(s) | 88, 168, 338, 844, 863 |
| BspCNI | CTCAG | 1 cut(s) | 669 |
| BspEI | TCCGGA | 1 cut(s) | 557 |
| BspLI | GGNNCC | 6 cut(s) | 180, 337, 379, 430, 566, 567 |
| BspMAI | CTGCAG | 1 cut(s) | 140 |
| BspOI | GCTAGC | 1 cut(s) | 762 |
| BspPI | GGATC | 1 cut(s) | 417 |
| BspT107I | GGYRCC | 1 cut(s) | 377 |
| BsrDI | GCAATG | 1 cut(s) | 73 |
| BsrI | ACTGG | 2 cut(s) | 169, 263 |
| BssECI | CCNNGG | 3 cut(s) | 287, 332, 424 |
| BssMI | GATC | 3 cut(s) | 354, 409, 610 |
| BssSI | CACGAG | 1 cut(s) | 127 |
| BssT1I | CCWWGG | 2 cut(s) | 287, 424 |
| Bst2BI | CACGAG | 1 cut(s) | 127 |
| Bst2UI | CCWGG | 3 cut(s) | 333, 606, 804 |
| Bst4CI | ACNGT | 6 cut(s) | 7, 160, 318, 401, 421, 742 |
| BstC8I | GCNNGC | 4 cut(s) | 23, 90, 393, 760 |
| BstDEI | CTNAG | 1 cut(s) | 677 |
| BstDSI | CCRYGG | 2 cut(s) | 287, 424 |
| BstKTI | GATC | 3 cut(s) | 357, 412, 613 |
| BstMAI | GTCTC | 4 cut(s) | 124, 198, 629, 673 |
| BstMBI | GATC | 3 cut(s) | 354, 409, 610 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 89, 869 |
| BstNI | CCWGG | 3 cut(s) | 333, 606, 804 |
| BstNSI | RCATGY | 1 cut(s) | 395 |
| BstSCI | CCNGG | 4 cut(s) | 175, 331, 604, 802 |
| BstSFI | CTRYAG | 2 cut(s) | 136, 867 |
| BstSLI | GKGCMC | 1 cut(s) | 323 |
| BstV1I | GCAGC | 1 cut(s) | 150 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 263 |
| BsuI | GTATCC | 1 cut(s) | 627 |
| BsuRI | GGCC | 5 cut(s) | 88, 168, 338, 844, 863 |
| BtgI | CCRYGG | 2 cut(s) | 287, 424 |
| BtgZI | GCGATG | 1 cut(s) | 706 |
| BtsIMutI | CAGTG | 3 cut(s) | 256, 323, 406 |
| Cac8I | GCNNGC | 4 cut(s) | 23, 90, 393, 760 |
| Cfr13I | GGNCC | 5 cut(s) | 179, 299, 336, 428, 565 |
| CseI | GACGC | 1 cut(s) | 590 |
| CsiI | ACCWGGT | 1 cut(s) | 802 |
| CviAII | CATG | 8 cut(s) | 263, 288, 392, 425, 482, 621, 830, 859 |
| DdeI | CTNAG | 1 cut(s) | 677 |
| DpnI | GATC | 3 cut(s) | 356, 411, 612 |
| DpnII | GATC | 3 cut(s) | 354, 409, 610 |
| DraIII | CACNNNGTG | 1 cut(s) | 318 |
| EaeI | YGGCCR | 3 cut(s) | 86, 166, 861 |
| Eco130I | CCWWGG | 2 cut(s) | 287, 424 |
| Eco147I | AGGCCT | 1 cut(s) | 844 |
| Eco32I | GATATC | 1 cut(s) | 284 |
| Eco47I | GGWCC | 4 cut(s) | 179, 299, 428, 565 |
| EcoO109I | RGGNCCY | 1 cut(s) | 565 |
| EcoRII | CCWGG | 3 cut(s) | 331, 604, 802 |
| EcoRV | GATATC | 1 cut(s) | 284 |
| EcoT14I | CCWWGG | 2 cut(s) | 287, 424 |
| ErhI | CCWWGG | 2 cut(s) | 287, 424 |
| Esp3I | CGTCTC | 1 cut(s) | 629 |
| FaeI | CATG | 8 cut(s) | 266, 291, 395, 428, 485, 624, 833, 862 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 137, 169, 366, 398 |
| FaqI | GGGAC | 4 cut(s) | 192, 414, 578, 763 |
| FatI | CATG | 8 cut(s) | 262, 287, 391, 424, 481, 620, 829, 858 |
| Fnu4HI | GCNGC | 2 cut(s) | 139, 864 |
| Fsp4HI | GCNGC | 2 cut(s) | 139, 864 |
| FspBI | CTAG | 1 cut(s) | 759 |
| GluI | GCNGC | 2 cut(s) | 139, 864 |
| HaeIII | GGCC | 5 cut(s) | 88, 168, 338, 844, 863 |
| HapII | CCGG | 3 cut(s) | 176, 558, 693 |
| HgaI | GACGC | 1 cut(s) | 590 |
| Hin1II | CATG | 8 cut(s) | 266, 291, 395, 428, 485, 624, 833, 862 |
| HincII | GTYRAC | 1 cut(s) | 602 |
| HindII | GTYRAC | 1 cut(s) | 602 |
| HindIII | AAGCTT | 1 cut(s) | 533 |
| HinfI | GANTC | 2 cut(s) | 132, 706 |
| HpaII | CCGG | 3 cut(s) | 176, 558, 693 |
| HphI | GGTGA | 3 cut(s) | 337, 784, 792 |
| Hpy166II | GTNNAC | 2 cut(s) | 345, 602 |
| Hpy188I | TCNGA | 5 cut(s) | 295, 367, 580, 634, 840 |
| Hpy188III | TCNNGA | 3 cut(s) | 12, 154, 558 |
| Hpy8I | GTNNAC | 2 cut(s) | 345, 602 |
| Hpy99I | CGWCG | 2 cut(s) | 221, 584 |
| HpyAV | CCTTC | 1 cut(s) | 368 |
| HpyCH4III | ACNGT | 6 cut(s) | 7, 160, 318, 401, 421, 742 |
| HpyCH4IV | ACGT | 1 cut(s) | 638 |
| HpyCH4V | TGCA | 5 cut(s) | 25, 31, 138, 485, 700 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 89, 869 |
| HpyF3I | CTNAG | 1 cut(s) | 677 |
| HpySE526I | ACGT | 1 cut(s) | 638 |
| Hsp92II | CATG | 8 cut(s) | 266, 291, 395, 428, 485, 624, 833, 862 |
| KflI | GGGWCCC | 1 cut(s) | 565 |
| Kpn2I | TCCGGA | 1 cut(s) | 557 |
| Kzo9I | GATC | 3 cut(s) | 354, 409, 610 |
| LmnI | GCTCC | 1 cut(s) | 831 |
| Lsp1109I | GCAGC | 1 cut(s) | 150 |
| LweI | GCATC | 2 cut(s) | 34, 745 |
| MabI | ACCWGGT | 1 cut(s) | 802 |
| MaeI | CTAG | 1 cut(s) | 759 |
| MaeII | ACGT | 1 cut(s) | 638 |
| MaeIII | GTNAC | 4 cut(s) | 95, 242, 736, 790 |
| MalI | GATC | 3 cut(s) | 356, 411, 612 |
| MboI | GATC | 3 cut(s) | 354, 409, 610 |
| MboII | GAAGA | 1 cut(s) | 529 |
| MhlI | GDGCHC | 1 cut(s) | 323 |
| MlsI | TGGCCA | 2 cut(s) | 88, 168 |
| MluCI | AATT | 3 cut(s) | 15, 324, 489 |
| MluNI | TGGCCA | 2 cut(s) | 88, 168 |
| MlyI | GAGTC | 1 cut(s) | 126 |
| MmeI | TCCRAC | 2 cut(s) | 273, 603 |
| MnlI | CCTC | 8 cut(s) | 77, 80, 361, 364, 489, 554, 599, 834 |
| Mox20I | TGGCCA | 2 cut(s) | 88, 168 |
| MroI | TCCGGA | 1 cut(s) | 557 |
| MroXI | GAANNNNTTC | 1 cut(s) | 62 |
| MscI | TGGCCA | 2 cut(s) | 88, 168 |
| MseI | TTAA | 1 cut(s) | 228 |
| MslI | CAYNNNNRTG | 2 cut(s) | 104, 261 |
| Msp20I | TGGCCA | 2 cut(s) | 88, 168 |
| MspI | CCGG | 3 cut(s) | 176, 558, 693 |
| MspR9I | CCNGG | 4 cut(s) | 177, 333, 606, 804 |
| MvaI | CCWGG | 3 cut(s) | 333, 606, 804 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 89, 869 |
| NciI | CCSGG | 1 cut(s) | 177 |
| NcoI | CCATGG | 2 cut(s) | 287, 424 |
| NdeII | GATC | 3 cut(s) | 354, 409, 610 |
| NheI | GCTAGC | 1 cut(s) | 758 |
| NlaIII | CATG | 8 cut(s) | 266, 291, 395, 428, 485, 624, 833, 862 |
| NlaIV | GGNNCC | 6 cut(s) | 180, 337, 379, 430, 566, 567 |
| NmeAIII | GCCGAG | 1 cut(s) | 104 |
| NmuCI | GTSAC | 1 cut(s) | 790 |
| NspI | RCATGY | 1 cut(s) | 395 |
| OliI | CACNNNNGTG | 1 cut(s) | 104 |
| PaeI | GCATGC | 1 cut(s) | 395 |
| PceI | AGGCCT | 1 cut(s) | 844 |
| PdmI | GAANNNNTTC | 1 cut(s) | 62 |
| PfeI | GAWTC | 1 cut(s) | 706 |
| PfoI | TCCNGGA | 1 cut(s) | 175 |
| PkrI | GCNGC | 2 cut(s) | 140, 865 |
| PleI | GAGTC | 1 cut(s) | 126 |
| PpsI | GAGTC | 1 cut(s) | 126 |
| PpuMI | RGGWCCY | 1 cut(s) | 565 |
| Psp5II | RGGWCCY | 1 cut(s) | 565 |
| Psp6I | CCWGG | 3 cut(s) | 331, 604, 802 |
| PspGI | CCWGG | 3 cut(s) | 331, 604, 802 |
| PspN4I | GGNNCC | 6 cut(s) | 180, 337, 379, 430, 566, 567 |
| PspPI | GGNCC | 5 cut(s) | 179, 299, 336, 428, 565 |
| PspPPI | RGGWCCY | 1 cut(s) | 565 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 446, 478 |
| PstI | CTGCAG | 1 cut(s) | 140 |
| RseI | CAYNNNNRTG | 2 cut(s) | 104, 261 |
| SaqAI | TTAA | 1 cut(s) | 228 |
| SatI | GCNGC | 2 cut(s) | 139, 864 |
| Sau3AI | GATC | 3 cut(s) | 354, 409, 610 |
| Sau96I | GGNCC | 5 cut(s) | 179, 299, 336, 428, 565 |
| SchI | GAGTC | 1 cut(s) | 126 |
| ScrFI | CCNGG | 4 cut(s) | 177, 333, 606, 804 |
| SduI | GDGCHC | 1 cut(s) | 323 |
| SexAI | ACCWGGT | 1 cut(s) | 802 |
| SfaNI | GCATC | 2 cut(s) | 34, 745 |
| SfcI | CTRYAG | 2 cut(s) | 136, 867 |
| SinI | GGWCC | 4 cut(s) | 179, 299, 428, 565 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 104, 261 |
| SphI | GCATGC | 1 cut(s) | 395 |
| Sse9I | AATT | 3 cut(s) | 15, 324, 489 |
| SseBI | AGGCCT | 1 cut(s) | 844 |
| SsiI | CCGC | 1 cut(s) | 864 |
| SspMI | CTAG | 1 cut(s) | 759 |
| StuI | AGGCCT | 1 cut(s) | 844 |
| StyD4I | CCNGG | 4 cut(s) | 175, 331, 604, 802 |
| StyI | CCWWGG | 2 cut(s) | 287, 424 |
| TaaI | ACNGT | 6 cut(s) | 7, 160, 318, 401, 421, 742 |
| TaiI | ACGT | 1 cut(s) | 641 |
| TaqI | TCGA | 1 cut(s) | 219 |
| TaqII | GACCGA | 1 cut(s) | 196 |
| TasI | AATT | 3 cut(s) | 15, 324, 489 |
| TauI | GCSGC | 1 cut(s) | 866 |
| TfiI | GAWTC | 1 cut(s) | 706 |
| Tru1I | TTAA | 1 cut(s) | 228 |
| Tru9I | TTAA | 1 cut(s) | 228 |
| TscAI | CASTG | 3 cut(s) | 263, 323, 406 |
| TseFI | GTSAC | 1 cut(s) | 790 |
| TseI | GCWGC | 1 cut(s) | 138 |
| Tsp45I | GTSAC | 1 cut(s) | 790 |
| TspGWI | ACGGA | 1 cut(s) | 312 |
| TspRI | CASTG | 3 cut(s) | 263, 323, 406 |
| VpaK11BI | GGWCC | 4 cut(s) | 179, 299, 428, 565 |
| XapI | RAATTY | 1 cut(s) | 489 |
| XceI | RCATGY | 1 cut(s) | 395 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 285 |
| XmnI | GAANNNNTTC | 1 cut(s) | 62 |
| XspI | CTAG | 1 cut(s) | 759 |