Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000359

Physical Location & Seq

Genomic Coordinates Reverse (-)

54506307 .. 54510038

Gene Structure 3732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG427300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1662 bp

ATGGTCAGTTTCCCGGACCGACTTTGTACGCTCGCAAAGGAGACACCGTCATCGTCGATGTCTTTAACAGGGGCAATCGTAACATTACTCTCCACTGGTACGCATTTAATTGATTCTCTCAAGCTTTCGATCATTCATATATGTAGTACGTGTTCAGCCCATATATATATAACAAGCTACTCGATCATGATTAGGCATGGTGTTGACCAACCAAGGAATCCATGGTCGGACGGACCAGAGTATATCACGCAGTGCCCGATTCAACCAGGAGCCAATTTCACCCAAAAAATCATTTTTTCCGAGGAGGAAGGCACTCTTTGGTGGCATGCTCACAGTGAGTGGGATCGAGCCACTGTACATGGTGCAATCATCATATACCCCAACAAGGACAACAATTACCCTTTTGCCAAGCCTCATGCAGAAATCCCGATCATATTGGGAGAGTGGTGGAAGGAAGATATAGGGAAGCTTTATACTCAAACTCTTCAATCCGGAGGGGACCCTAATGATTCCTCCGCTTTCCTCATTAACGGTCAACCCGGCCATCGGTATCCATGCTCTGAATCAGAGACATTCAATCTGATGGTTGATTATGGCAAAACCTACCTACTGAGGCTAATCAATTCCGTTGTGCAAGAGATTATGTTTTTCTCCATCGCCAATCACAAAGTCACAGTTGTAGGGGCAGATGCTAGCTACACCAAGCCTTTCACAACCGATTATGTCACAATCGCACCCGGTCAAACCCTTGACCTTTTGCTCACTGCTAATCAGAAGCCTAACCACTACTACATGGCCGCTAAAGCCTATGTAGGTGGTGTTGGGGTTCCTTATGATAACACCACCACCACAGCCCTACTGCAATACTCAAATCGCGGGTTAAAAAATTACACATACACCCCTTCTCGAACCCCTTCGTTTCCTACTCTTCCTGCCTACAATGACACTAATGCATCGGTTAATTTTTCCGGCAGTCTCAGAAGCTTAGCTGATAAGAACCACCCCATTGATGTTCCACTTAAAATTACAACTCACTTGTTTTACACAGTCTCCGTCAACTCGTTTCCCTGCCCGAATAATTCCTGCGCCGGGCCTAATGGGACACGTTTCGCCGCTAGCGTGAACAACATCAGCTTTGTGGACCCTAGCATTGACATACTACAAGCTTACTATTATCATGTCAACGGGGAATTTGGAACTCGCTTTCCAGATTTCCCGCCCTCGCTGTTTAATTTTACGGCGCAGGACTTGCCGCTGTACCTTCAGATTCCGAAACGAGGGACGGAGGTGAAGGTATTGGAGTACAACACCACGGTGGAGCTTGTGTTTCAAGGGACTAATTTGGTGTCGGGGGATGACCATCCAATGCATCTGCATGGTTACAGTTTCTATGTTGTTGGAATGGGGCTTGGGAACTTTGACAAGGATAAGGACCCTTTGAAATATAATCTTGTCGATCCTCCTCTTCGGAACACCGTTATCGTCCCTGTAAATGGGTGGACTACCATTAGATTCAAGGCCAACAACCCTGGAGTTTGGTTTATGCACTGCCATCTTGATAGGCATATGTCGTGGGGCATGGACGTGACATTCATAGTGAAAAATGGAAAGGGCCCTCAAGCACAAATGTTACCTCCACCACCGGATATGCCACCATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0010023 GO:0010035 GO:0010038 GO:0016491 GO:0016722 GO:0017144 GO:0018130 GO:0018958 GO:0019438 GO:0019748 GO:0042221 GO:0043167 GO:0043169 GO:0044237 GO:0044249 GO:0044550 GO:0046189 GO:0046483 GO:0046688 GO:0046872 GO:0046914 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

553

Amino Acids

61.63

Weight (kDa)

6.19

Isoelectric Point (pI)

34.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase_3	PF07732	63 - 129	2.3e-20	Multicopper oxidase
Cu-oxidase	PF00394	142 - 291	1.4e-39	Multicopper oxidase
Cu-oxidase_2	PF07731	403 - 536	1.4e-42	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48100
fragaria_vesca	FvH4_1g24380 FvH4_2g05800 FvH4_5g30730
malus_domestica	MD01G1234900.v1.1 MD01G1235100.v1.1 MD01G1235200.v1.1 MD07G1307400.v1.1 MD07G1308000.v1.1 MD10G1042300.v1.1 MD10G1042400.v1.1 MD10G1042500.v1.1 MD10G1042700.v1.1
prunus_persica	Prupe.2G325200_v2.0.a1 Prupe.6G242000_v2.0.a1 Prupe.8G046800_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1
pyrus_communis	pycom01g24320 pycom01g24330 pycom07g28020 pycom10g02950 pycom17g03690
rosa_chinensis	RchiOBHm_Chr1g0384031 RchiOBHm_Chr2g0120941 RchiOBHm_Chr2g0120971 RchiOBHm_Chr2g0121051 RchiOBHm_Chr2g0121181 RchiOBHm_Chr2g0121211 RchiOBHm_Chr3g0473931 RchiOBHm_Chr3g0473941 RchiOBHm_Chr6g0257941 RchiOBHm_Chr6g0284781
rosa_laevigata	RLG00000008541 RLG00000014737 RLG00000018604 RLG00000018607 RLG00000018608 RLG00000018610 RLG00000018611 RLG00000018613 RLG00000023967 RLG00000023970 RLG00000026078 RLG00000035183
rosa_multiflora	Rmu_sc0000079.1_g000043 Rmu_sc0000079.1_g000062 Rmu_sc0000079.1_g000069 Rmu_sc0000621.1_g000019 Rmu_sc0000621.1_g000025 Rmu_sc0000621.1_g000041 Rmu_sc0000652.1_g000018 Rmu_sc0002414.1_g000030 Rmu_sc0002414.1_g000033 Rmu_sc0002843.1_g000016 Rmu_sc0005137.1_g000035 Rmu_sc0005139.1_g000021
rosa_roxburghii	Rroxscaffold_2G00122530 Rroxscaffold_2G00122570 Rroxscaffold_2G00122580 Rroxscaffold_2G00122650 Rroxscaffold_4G00277080 Rroxscaffold_6G00407610 Rroxscaffold_6G00407620 Rroxscaffold_7G00209050
rosa_rugosa	Rorug01G0444300 Rorug02G0232700 Rorug02G0232700 Rorug02G0232900 Rorug03G0137100 Rorug05G0565600 Rorug05G0566500
rosa_samantha	Rh1BG427300 Rh1CG440100 Rh2CG278100 Rh2CG278200 Rh2CG278700 Rh2CG278800 Rh2CG279100 Rh2DG314200 Rh2DG314300 Rh2DG314600 Rh3AG187200 Rh3DG211700 Rh3DG211800 Rh5AG356600 Rh6BG078000 Rh6BG078700 Rh6CG073300 Rh6DG070300 Rh6DG190200 Rh6DG274700 Rh7BG365900
rosa_wichuraiana	Rw0G018400 Rw1G040270 Rw2G023160 Rw2G023170 Rw2G023190 Rw2G023200 Rw2G023220 Rw2G023230 Rw3G017140 Rw3G017150 Rw4G012840 Rw6G007580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	876
AccIII	TCCGGA	1 cut(s)	491
AciI	CCGC	6 cut(s)	516, 798, 876, 1113, 1217, 1253
AclWI	GGATC	2 cut(s)	351, 1451
AcoI	YGGCCR	2 cut(s)	541, 795
AcsI	RAATTY	1 cut(s)	1190
AcuI	CTGAAG	1 cut(s)	1247
AdeI	CACNNNGTG	1 cut(s)	252
AfaI	GTAC	6 cut(s)	28, 100, 148, 357, 1259, 1304
AfiI	CCNNNNNNNGG	5 cut(s)	385, 546, 1089, 1277, 1493
AflIII	ACRYGT	2 cut(s)	149, 1103
AgsI	TTSAA	6 cut(s)	263, 488, 577, 1331, 1441, 1516
AjiI	CACGTC	1 cut(s)	1585
AjnI	CCWGG	2 cut(s)	265, 1528
AleI	CACNNNNGTG	1 cut(s)	1313
AloI	GAACNNNNNNTCC	2 cut(s)	1189, 1221
AluBI	AGCT	9 cut(s)	124, 177, 469, 696, 984, 989, 1134, 1166, 1321
AluI	AGCT	9 cut(s)	124, 177, 469, 696, 984, 989, 1134, 1166, 1321
Alw26I	GTCTC	4 cut(s)	35, 563, 980, 1054
AlwI	GGATC	2 cut(s)	351, 1451
Aor13HI	TCCGGA	1 cut(s)	491
AoxI	GGCC	5 cut(s)	541, 795, 1091, 1518, 1612
ApaI	GGGCCC	1 cut(s)	1616
ApoI	RAATTY	1 cut(s)	1190
Asp700I	GAANNNNTTC	1 cut(s)	913
AspLEI	GCGC	2 cut(s)	1088, 1243
AspS9I	GGNCC	8 cut(s)	16, 233, 499, 1091, 1141, 1432, 1612, 1613
AsuC2I	CCSGG	4 cut(s)	14, 540, 738, 1090
AsuHPI	GGTGA	2 cut(s)	271, 1300
AsuNHI	GCTAGC	2 cut(s)	692, 1115
AvaII	GGWCC	5 cut(s)	16, 233, 499, 1141, 1432
BaeGI	GKGCMC	2 cut(s)	257, 1616
BanII	GRGCYC	1 cut(s)	1616
BccI	CCATC	5 cut(s)	552, 577, 662, 1368, 1560
BceAI	ACGGC	1 cut(s)	1254
BciT130I	CCWGG	2 cut(s)	267, 1530
BciVI	GTATCC	1 cut(s)	561
BcnI	CCSGG	4 cut(s)	14, 540, 738, 1090
BcoDI	GTCTC	4 cut(s)	35, 563, 980, 1054
BfaI	CTAG	3 cut(s)	693, 1116, 1146
BfuI	GTATCC	1 cut(s)	561
BisI	GCNGC	3 cut(s)	798, 1113, 1253
BlpI	GCTNAGC	1 cut(s)	985
BlsI	GCNGC	3 cut(s)	799, 1114, 1254
Bme1390I	CCNGG	6 cut(s)	14, 267, 540, 738, 1090, 1530
Bme18I	GGWCC	5 cut(s)	16, 233, 499, 1141, 1432
BmgBI	CACGTC	1 cut(s)	1585
BmgT120I	GGNCC	8 cut(s)	16, 233, 499, 1091, 1141, 1432, 1612, 1613
BmiI	GGNNCC	7 cut(s)	271, 500, 501, 828, 1143, 1434, 1614
BmrFI	CCNGG	6 cut(s)	14, 267, 540, 738, 1090, 1530
BmsI	GCATC	3 cut(s)	679, 962, 1378
BmtI	GCTAGC	2 cut(s)	696, 1119
BpmI	CTGGAG	1 cut(s)	1551
Bpu1102I	GCTNAGC	1 cut(s)	985
BpuEI	CTTGAG	2 cut(s)	104, 1602
BpuMI	CCSGG	4 cut(s)	14, 540, 738, 1090
BsaAI	YACGTR	1 cut(s)	150
BsaBI	GATNNNNATC	1 cut(s)	1359
BsaJI	CCNNGG	5 cut(s)	212, 221, 300, 1311, 1528
BsaWI	WCCGGW	2 cut(s)	491, 1642
BsaXI	ACNNNNNCTCC	6 cut(s)	32, 62, 1034, 1064, 1310, 1340
Bsc4I	CCNNNNNNNGG	5 cut(s)	385, 546, 1089, 1277, 1493
Bse1I	ACTGG	1 cut(s)	100
Bse8I	GATNNNNATC	1 cut(s)	1359
BseAI	TCCGGA	1 cut(s)	491
BseBI	CCWGG	2 cut(s)	267, 1530
BseDI	CCNNGG	5 cut(s)	212, 221, 300, 1311, 1528
BseGI	GGATG	2 cut(s)	1360, 1360
BseJI	GATNNNNATC	1 cut(s)	1359
BseLI	CCNNNNNNNGG	5 cut(s)	385, 546, 1089, 1277, 1493
BseMII	CTCAG	2 cut(s)	602, 991
BseNI	ACTGG	1 cut(s)	100
BseRI	GAGGAG	2 cut(s)	317, 1452
BseSI	GKGCMC	2 cut(s)	257, 1616
Bsh1236I	CGCG	1 cut(s)	876
BshFI	GGCC	5 cut(s)	543, 797, 1093, 1520, 1614
BsiSI	CCGG	7 cut(s)	14, 492, 540, 738, 969, 1089, 1643
BslFI	GGGAC	5 cut(s)	512, 1114, 1294, 1348, 1469
BslI	CCNNNNNNNGG	5 cut(s)	385, 546, 1089, 1277, 1493
BsmAI	GTCTC	4 cut(s)	35, 563, 980, 1054
BsmFI	GGGAC	5 cut(s)	512, 1114, 1294, 1348, 1469
BsnI	GGCC	5 cut(s)	543, 797, 1093, 1520, 1614
Bsp120I	GGGCCC	1 cut(s)	1612
Bsp1286I	GDGCHC	2 cut(s)	257, 1616
Bsp13I	TCCGGA	1 cut(s)	491
Bsp1407I	TGTACA	1 cut(s)	355
Bsp143I	GATC	5 cut(s)	129, 183, 343, 429, 1456
Bsp1720I	GCTNAGC	1 cut(s)	985
Bsp19I	CCATGG	1 cut(s)	221
BspACI	CCGC	6 cut(s)	516, 798, 876, 1113, 1217, 1253
BspANI	GGCC	5 cut(s)	543, 797, 1093, 1520, 1614
BspCNI	CTCAG	2 cut(s)	603, 990
BspEI	TCCGGA	1 cut(s)	491
BspFNI	CGCG	1 cut(s)	876
BspHI	TCATGA	1 cut(s)	186
BspLI	GGNNCC	7 cut(s)	271, 500, 501, 828, 1143, 1434, 1614
BspOI	GCTAGC	2 cut(s)	696, 1119
BspPI	GGATC	2 cut(s)	351, 1451
BsrGI	TGTACA	1 cut(s)	355
BsrI	ACTGG	1 cut(s)	100
BssECI	CCNNGG	5 cut(s)	212, 221, 300, 1311, 1528
BssMI	GATC	5 cut(s)	129, 183, 343, 429, 1456
BssT1I	CCWWGG	2 cut(s)	212, 221
Bst2UI	CCWGG	2 cut(s)	267, 1530
Bst4CI	ACNGT	9 cut(s)	48, 335, 355, 533, 676, 1048, 1315, 1385, 1477
Bst6I	CTCTTC	3 cut(s)	489, 933, 1470
BstAPI	GCANNNNNTGC	1 cut(s)	1249
BstAUI	TGTACA	1 cut(s)	355
BstBAI	YACGTR	1 cut(s)	150
BstC8I	GCNNGC	4 cut(s)	33, 327, 694, 1117
BstDEI	CTNAG	3 cut(s)	611, 977, 985
BstDSI	CCRYGG	2 cut(s)	221, 1311
BstF5I	GGATG	2 cut(s)	1360, 1360
BstFNI	CGCG	1 cut(s)	876
BstHHI	GCGC	2 cut(s)	1088, 1243
BstKTI	GATC	5 cut(s)	132, 186, 346, 432, 1459
BstMAI	GTCTC	4 cut(s)	35, 563, 980, 1054
BstMBI	GATC	5 cut(s)	129, 183, 343, 429, 1456
BstMWI	GCNNNNNNNGC	2 cut(s)	803, 1249
BstNI	CCWGG	2 cut(s)	267, 1530
BstNSI	RCATGY	1 cut(s)	329
BstSCI	CCNGG	6 cut(s)	12, 265, 538, 736, 1088, 1528
BstSLI	GKGCMC	2 cut(s)	257, 1616
BstUI	CGCG	1 cut(s)	876
BsuI	GTATCC	1 cut(s)	561
BsuRI	GGCC	5 cut(s)	543, 797, 1093, 1520, 1614
BtgI	CCRYGG	2 cut(s)	221, 1311
BtgZI	GCGATG	1 cut(s)	640
BtrI	CACGTC	1 cut(s)	1585
BtsCI	GGATG	2 cut(s)	1360, 1360
BtsI	GCAGTG	3 cut(s)	257, 762, 1546
BtsIMutI	CAGTG	6 cut(s)	93, 257, 340, 351, 762, 1546
Cac8I	GCNNGC	4 cut(s)	33, 327, 694, 1117
CciI	TCATGA	1 cut(s)	186
CfoI	GCGC	2 cut(s)	1088, 1243
Cfr13I	GGNCC	8 cut(s)	16, 233, 499, 1091, 1141, 1432, 1612, 1613
CpoI	CGGWCCG	1 cut(s)	16
Csp6I	GTAC	6 cut(s)	27, 99, 147, 356, 1258, 1303
CspI	CGGWCCG	1 cut(s)	16
CviQI	GTAC	6 cut(s)	27, 99, 147, 356, 1258, 1303
DdeI	CTNAG	3 cut(s)	611, 977, 985
DpnI	GATC	5 cut(s)	131, 185, 345, 431, 1458
DpnII	GATC	5 cut(s)	129, 183, 343, 429, 1456
DraIII	CACNNNGTG	1 cut(s)	252
EaeI	YGGCCR	2 cut(s)	541, 795
Eam1104I	CTCTTC	3 cut(s)	489, 933, 1470
EarI	CTCTTC	3 cut(s)	489, 933, 1470
Eco130I	CCWWGG	2 cut(s)	212, 221
Eco24I	GRGCYC	1 cut(s)	1616
Eco47I	GGWCC	5 cut(s)	16, 233, 499, 1141, 1432
Eco57I	CTGAAG	1 cut(s)	1247
EcoO109I	RGGNCCY	4 cut(s)	499, 1432, 1612, 1613
EcoRII	CCWGG	2 cut(s)	265, 1528
EcoT14I	CCWWGG	2 cut(s)	212, 221
EcoT22I	ATGCAT	2 cut(s)	955, 1371
EcoT38I	GRGCYC	1 cut(s)	1616
ErhI	CCWWGG	2 cut(s)	212, 221
FalI	AAGNNNNNCTT	2 cut(s)	300, 332
FaqI	GGGAC	5 cut(s)	512, 1114, 1294, 1348, 1469
FauI	CCCGC	2 cut(s)	869, 1224
FauNDI	CATATG	1 cut(s)	1566
Fnu4HI	GCNGC	3 cut(s)	798, 1113, 1253
FokI	GGATG	2 cut(s)	1347, 1367
FriOI	GRGCYC	1 cut(s)	1616
Fsp4HI	GCNGC	3 cut(s)	798, 1113, 1253
FspBI	CTAG	3 cut(s)	693, 1116, 1146
GlaI	GCGC	2 cut(s)	1087, 1242
GluI	GCNGC	3 cut(s)	798, 1113, 1253
GsuI	CTGGAG	1 cut(s)	1551
HaeIII	GGCC	5 cut(s)	543, 797, 1093, 1520, 1614
HapII	CCGG	7 cut(s)	14, 492, 540, 738, 969, 1089, 1643
HhaI	GCGC	2 cut(s)	1088, 1243
Hin6I	GCGC	2 cut(s)	1086, 1241
HinP1I	GCGC	2 cut(s)	1086, 1241
HincII	GTYRAC	4 cut(s)	205, 536, 1057, 1183
HindII	GTYRAC	4 cut(s)	205, 536, 1057, 1183
HindIII	AAGCTT	4 cut(s)	122, 467, 982, 1164
HinfI	GANTC	7 cut(s)	113, 217, 259, 509, 563, 1267, 1512
HpaII	CCGG	7 cut(s)	14, 492, 540, 738, 969, 1089, 1643
HphI	GGTGA	2 cut(s)	271, 1300
Hpy166II	GTNNAC	7 cut(s)	205, 536, 1057, 1123, 1141, 1183, 1500
Hpy188III	TCNNGA	6 cut(s)	187, 427, 492, 906, 1208, 1556
Hpy8I	GTNNAC	7 cut(s)	205, 536, 1057, 1123, 1141, 1183, 1500
Hpy99I	CGWCG	1 cut(s)	58
HpyAV	CCTTC	6 cut(s)	302, 445, 912, 924, 1271, 1285
HpyCH4III	ACNGT	9 cut(s)	48, 335, 355, 533, 676, 1048, 1315, 1385, 1477
HpyCH4IV	ACGT	3 cut(s)	149, 1105, 1584
HpyCH4V	TGCA	8 cut(s)	365, 419, 634, 862, 953, 1369, 1375, 1546
HpyF10VI	GCNNNNNNNGC	2 cut(s)	803, 1249
HpyF3I	CTNAG	3 cut(s)	611, 977, 985
HpySE526I	ACGT	3 cut(s)	149, 1105, 1584
HspAI	GCGC	2 cut(s)	1086, 1241
KflI	GGGWCCC	1 cut(s)	499
Kpn2I	TCCGGA	1 cut(s)	491
Kzo9I	GATC	5 cut(s)	129, 183, 343, 429, 1456
LmnI	GCTCC	2 cut(s)	269, 1318
LweI	GCATC	3 cut(s)	679, 962, 1378
MaeI	CTAG	3 cut(s)	693, 1116, 1146
MaeII	ACGT	3 cut(s)	149, 1105, 1584
MaeIII	GTNAC	6 cut(s)	79, 670, 724, 1379, 1585, 1629
MalI	GATC	5 cut(s)	131, 185, 345, 431, 1458
MboI	GATC	5 cut(s)	129, 183, 343, 429, 1456
MboII	GAAGA	4 cut(s)	467, 476, 920, 1457
MhlI	GDGCHC	2 cut(s)	257, 1616
MmeI	TCCRAC	2 cut(s)	207, 1378
Mph1103I	ATGCAT	2 cut(s)	955, 1371
MroI	TCCGGA	1 cut(s)	491
MroXI	GAANNNNTTC	1 cut(s)	913
MseI	TTAA	8 cut(s)	65, 107, 528, 881, 960, 1020, 1230, 1660
MslI	CAYNNNNRTG	3 cut(s)	1313, 1374, 1583
MspA1I	CMGCKG	1 cut(s)	1255
MspI	CCGG	7 cut(s)	14, 492, 540, 738, 969, 1089, 1643
MspR9I	CCNGG	6 cut(s)	14, 267, 540, 738, 1090, 1530
MvaI	CCWGG	2 cut(s)	267, 1530
MvnI	CGCG	1 cut(s)	876
MwoI	GCNNNNNNNGC	2 cut(s)	803, 1249
NciI	CCSGG	4 cut(s)	14, 540, 738, 1090
NcoI	CCATGG	1 cut(s)	221
NdeI	CATATG	1 cut(s)	1566
NdeII	GATC	5 cut(s)	129, 183, 343, 429, 1456
NheI	GCTAGC	2 cut(s)	692, 1115
NlaIV	GGNNCC	7 cut(s)	271, 500, 501, 828, 1143, 1434, 1614
NmuCI	GTSAC	3 cut(s)	670, 724, 1585
NsiI	ATGCAT	2 cut(s)	955, 1371
NspI	RCATGY	1 cut(s)	329
OliI	CACNNNNGTG	1 cut(s)	1313
PaeI	GCATGC	1 cut(s)	329
PagI	TCATGA	1 cut(s)	186
PcsI	WCGNNNNNNNCGW	2 cut(s)	254, 1116
PdmI	GAANNNNTTC	1 cut(s)	913
PfeI	GAWTC	7 cut(s)	113, 217, 259, 509, 563, 1267, 1512
PflFI	GACNNNGTC	1 cut(s)	46
PfoI	TCCNGGA	1 cut(s)	12
PkrI	GCNGC	3 cut(s)	799, 1114, 1254
Ppu21I	YACGTR	1 cut(s)	150
PpuMI	RGGWCCY	2 cut(s)	499, 1432
Psp5II	RGGWCCY	2 cut(s)	499, 1432
Psp6I	CCWGG	2 cut(s)	265, 1528
PspGI	CCWGG	2 cut(s)	265, 1528
PspN4I	GGNNCC	7 cut(s)	271, 500, 501, 828, 1143, 1434, 1614
PspOMI	GGGCCC	1 cut(s)	1612
PspPI	GGNCC	8 cut(s)	16, 233, 499, 1091, 1141, 1432, 1612, 1613
PspPPI	RGGWCCY	2 cut(s)	499, 1432
PsrI	GAACNNNNNNTAC	2 cut(s)	136, 168
PsyI	GACNNNGTC	1 cut(s)	46
RsaI	GTAC	6 cut(s)	28, 100, 148, 357, 1259, 1304
RsaNI	GTAC	6 cut(s)	27, 99, 147, 356, 1258, 1303
RseI	CAYNNNNRTG	3 cut(s)	1313, 1374, 1583
Rsr2I	CGGWCCG	1 cut(s)	16
RsrII	CGGWCCG	1 cut(s)	16
SaqAI	TTAA	8 cut(s)	65, 107, 528, 881, 960, 1020, 1230, 1660
SatI	GCNGC	3 cut(s)	798, 1113, 1253
Sau3AI	GATC	5 cut(s)	129, 183, 343, 429, 1456
Sau96I	GGNCC	8 cut(s)	16, 233, 499, 1091, 1141, 1432, 1612, 1613
ScrFI	CCNGG	6 cut(s)	14, 267, 540, 738, 1090, 1530
SduI	GDGCHC	2 cut(s)	257, 1616
SfaNI	GCATC	3 cut(s)	679, 962, 1378
SinI	GGWCC	5 cut(s)	16, 233, 499, 1141, 1432
SmiMI	CAYNNNNRTG	3 cut(s)	1313, 1374, 1583
SmlI	CTYRAG	2 cut(s)	119, 1617
SmoI	CTYRAG	2 cut(s)	119, 1617
SphI	GCATGC	1 cut(s)	329
SsiI	CCGC	6 cut(s)	516, 798, 876, 1113, 1217, 1253
SspMI	CTAG	3 cut(s)	693, 1116, 1146
StyD4I	CCNGG	6 cut(s)	12, 265, 538, 736, 1088, 1528
StyI	CCWWGG	2 cut(s)	212, 221
TaaI	ACNGT	9 cut(s)	48, 335, 355, 533, 676, 1048, 1315, 1385, 1477
TaiI	ACGT	3 cut(s)	152, 1108, 1587
TaqI	TCGA	6 cut(s)	56, 128, 182, 346, 907, 1455
TaqII	GACCGA	1 cut(s)	33
TatI	WGTACW	2 cut(s)	355, 1302
TauI	GCSGC	3 cut(s)	800, 1115, 1255
TfiI	GAWTC	7 cut(s)	113, 217, 259, 509, 563, 1267, 1512
Tru1I	TTAA	8 cut(s)	65, 107, 528, 881, 960, 1020, 1230, 1660
Tru9I	TTAA	8 cut(s)	65, 107, 528, 881, 960, 1020, 1230, 1660
TscAI	CASTG	6 cut(s)	100, 257, 340, 358, 769, 1553
TseFI	GTSAC	3 cut(s)	670, 724, 1585
Tsp45I	GTSAC	3 cut(s)	670, 724, 1585
TspDTI	ATGAA	2 cut(s)	125, 1582
TspGWI	ACGGA	4 cut(s)	246, 616, 1042, 1298
TspRI	CASTG	6 cut(s)	100, 257, 340, 358, 769, 1553
Tth111I	GACNNNGTC	1 cut(s)	46
VpaK11BI	GGWCC	5 cut(s)	16, 233, 499, 1141, 1432
XapI	RAATTY	1 cut(s)	1190
XceI	RCATGY	1 cut(s)	329
XcmI	CCANNNNNNNNNTGG	1 cut(s)	219
XmnI	GAANNNNTTC	1 cut(s)	913
XspI	CTAG	3 cut(s)	693, 1116, 1146
Zsp2I	ATGCAT	2 cut(s)	955, 1371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.