Lignin degradation and detoxification of lignin-derived products
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RRM_1 | PF00076 | 176 - 231 | 3.7e-06 | RNA recognition motif |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 259 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 545 |
| AccI | GTMKAC | 1 cut(s) | 742 |
| AciI | CCGC | 1 cut(s) | 313 |
| AclWI | GGATC | 5 cut(s) | 269, 626, 639, 709, 722 |
| AcuI | CTGAAG | 1 cut(s) | 312 |
| AcyI | GRCGYC | 1 cut(s) | 323 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 303, 545 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 449 |
| AjnI | CCWGG | 3 cut(s) | 76, 325, 373 |
| AluBI | AGCT | 5 cut(s) | 147, 422, 458, 653, 662 |
| AluI | AGCT | 5 cut(s) | 147, 422, 458, 653, 662 |
| Alw26I | GTCTC | 1 cut(s) | 294 |
| AlwI | GGATC | 5 cut(s) | 269, 626, 639, 709, 722 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 398 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 148 |
| AsuHPI | GGTGA | 3 cut(s) | 262, 380, 533 |
| BaeGI | GKGCMC | 1 cut(s) | 8 |
| BamHI | GGATCC | 2 cut(s) | 631, 714 |
| BccI | CCATC | 3 cut(s) | 109, 415, 754 |
| BceAI | ACGGC | 1 cut(s) | 178 |
| BciT130I | CCWGG | 3 cut(s) | 78, 327, 375 |
| BcoDI | GTCTC | 1 cut(s) | 294 |
| BfaI | CTAG | 2 cut(s) | 264, 582 |
| Bme1390I | CCNGG | 3 cut(s) | 78, 327, 375 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 449 |
| BmiI | GGNNCC | 3 cut(s) | 579, 633, 716 |
| BmrFI | CCNGG | 3 cut(s) | 78, 327, 375 |
| BmsI | GCATC | 2 cut(s) | 16, 334 |
| BpuEI | CTTGAG | 1 cut(s) | 454 |
| BsaHI | GRCGYC | 1 cut(s) | 323 |
| BsaJI | CCNNGG | 1 cut(s) | 326 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 303, 545 |
| Bse1I | ACTGG | 1 cut(s) | 775 |
| Bse3DI | GCAATG | 1 cut(s) | 609 |
| BseBI | CCWGG | 3 cut(s) | 78, 327, 375 |
| BseDI | CCNNGG | 1 cut(s) | 326 |
| BseGI | GGATG | 2 cut(s) | 31, 89 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 303, 545 |
| BseMI | GCAATG | 1 cut(s) | 609 |
| BseMII | CTCAG | 1 cut(s) | 437 |
| BseNI | ACTGG | 1 cut(s) | 775 |
| BseRI | GAGGAG | 1 cut(s) | 529 |
| BseSI | GKGCMC | 1 cut(s) | 8 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 303, 545 |
| BsmAI | GTCTC | 1 cut(s) | 294 |
| Bsp1286I | GDGCHC | 1 cut(s) | 8 |
| Bsp143I | GATC | 5 cut(s) | 274, 526, 631, 714, 757 |
| BspACI | CCGC | 1 cut(s) | 313 |
| BspCNI | CTCAG | 1 cut(s) | 436 |
| BspLI | GGNNCC | 3 cut(s) | 579, 633, 716 |
| BspPI | GGATC | 5 cut(s) | 269, 626, 639, 709, 722 |
| BsrDI | GCAATG | 1 cut(s) | 609 |
| BsrI | ACTGG | 1 cut(s) | 775 |
| BssECI | CCNNGG | 1 cut(s) | 326 |
| BssMI | GATC | 5 cut(s) | 274, 526, 631, 714, 757 |
| BssNI | GRCGYC | 1 cut(s) | 323 |
| Bst2UI | CCWGG | 3 cut(s) | 78, 327, 375 |
| Bst4CI | ACNGT | 3 cut(s) | 56, 385, 590 |
| BstACI | GRCGYC | 1 cut(s) | 323 |
| BstC8I | GCNNGC | 1 cut(s) | 460 |
| BstDEI | CTNAG | 2 cut(s) | 167, 423 |
| BstF5I | GGATG | 2 cut(s) | 31, 89 |
| BstKTI | GATC | 5 cut(s) | 277, 529, 634, 717, 760 |
| BstMAI | GTCTC | 1 cut(s) | 294 |
| BstMBI | GATC | 5 cut(s) | 274, 526, 631, 714, 757 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 650, 659 |
| BstNI | CCWGG | 3 cut(s) | 78, 327, 375 |
| BstSCI | CCNGG | 3 cut(s) | 76, 325, 373 |
| BstSLI | GKGCMC | 1 cut(s) | 8 |
| BstX2I | RGATCY | 2 cut(s) | 631, 714 |
| BstYI | RGATCY | 2 cut(s) | 631, 714 |
| BtsCI | GGATG | 2 cut(s) | 31, 89 |
| BtsIMutI | CAGTG | 2 cut(s) | 61, 781 |
| Cac8I | GCNNGC | 1 cut(s) | 460 |
| CaiI | CAGNNNCTG | 1 cut(s) | 398 |
| CseI | GACGC | 1 cut(s) | 331 |
| CsiI | ACCWGGT | 1 cut(s) | 373 |
| CviAII | CATG | 1 cut(s) | 446 |
| DdeI | CTNAG | 2 cut(s) | 167, 423 |
| DpnI | GATC | 5 cut(s) | 276, 528, 633, 716, 759 |
| DpnII | GATC | 5 cut(s) | 274, 526, 631, 714, 757 |
| DraI | TTTAAA | 1 cut(s) | 553 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 259 |
| DriI | GACNNNNNGTC | 1 cut(s) | 449 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 259 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 449 |
| Eco57I | CTGAAG | 1 cut(s) | 312 |
| EcoRII | CCWGG | 3 cut(s) | 76, 325, 373 |
| FaeI | CATG | 1 cut(s) | 449 |
| FaiI | YATR | 8 cut(s) | 48, 198, 271, 273, 336, 447, 613, 656 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 136, 168 |
| FatI | CATG | 1 cut(s) | 445 |
| FblI | GTMKAC | 1 cut(s) | 742 |
| FokI | GGATG | 2 cut(s) | 38, 76 |
| FspBI | CTAG | 2 cut(s) | 264, 582 |
| HgaI | GACGC | 1 cut(s) | 331 |
| Hin1I | GRCGYC | 1 cut(s) | 323 |
| Hin1II | CATG | 1 cut(s) | 449 |
| HinfI | GANTC | 3 cut(s) | 236, 698, 774 |
| HphI | GGTGA | 3 cut(s) | 262, 380, 533 |
| Hpy166II | GTNNAC | 3 cut(s) | 371, 571, 743 |
| Hpy188I | TCNGA | 8 cut(s) | 94, 157, 235, 426, 455, 757, 762, 779 |
| Hpy188III | TCNNGA | 1 cut(s) | 593 |
| Hpy8I | GTNNAC | 3 cut(s) | 371, 571, 743 |
| HpyAV | CCTTC | 2 cut(s) | 519, 713 |
| HpyCH4III | ACNGT | 3 cut(s) | 56, 385, 590 |
| HpyCH4V | TGCA | 1 cut(s) | 725 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 650, 659 |
| HpyF3I | CTNAG | 2 cut(s) | 167, 423 |
| Hsp92I | GRCGYC | 1 cut(s) | 323 |
| Hsp92II | CATG | 1 cut(s) | 449 |
| Kzo9I | GATC | 5 cut(s) | 274, 526, 631, 714, 757 |
| LmnI | GCTCC | 2 cut(s) | 455, 577 |
| LweI | GCATC | 2 cut(s) | 16, 334 |
| MabI | ACCWGGT | 1 cut(s) | 373 |
| MaeI | CTAG | 2 cut(s) | 264, 582 |
| MaeIII | GTNAC | 5 cut(s) | 80, 105, 250, 385, 671 |
| MalI | GATC | 5 cut(s) | 276, 528, 633, 716, 759 |
| MboI | GATC | 5 cut(s) | 274, 526, 631, 714, 757 |
| MboII | GAAGA | 2 cut(s) | 144, 296 |
| MflI | RGATCY | 2 cut(s) | 631, 714 |
| MhlI | GDGCHC | 1 cut(s) | 8 |
| MluCI | AATT | 1 cut(s) | 70 |
| MmeI | TCCRAC | 1 cut(s) | 433 |
| MnlI | CCTC | 4 cut(s) | 16, 442, 507, 705 |
| MroXI | GAANNNNTTC | 1 cut(s) | 148 |
| MseI | TTAA | 1 cut(s) | 552 |
| MspR9I | CCNGG | 3 cut(s) | 78, 327, 375 |
| MvaI | CCWGG | 3 cut(s) | 78, 327, 375 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 650, 659 |
| NdeII | GATC | 5 cut(s) | 274, 526, 631, 714, 757 |
| NlaIII | CATG | 1 cut(s) | 449 |
| NlaIV | GGNNCC | 3 cut(s) | 579, 633, 716 |
| NmuCI | GTSAC | 1 cut(s) | 250 |
| PdmI | GAANNNNTTC | 1 cut(s) | 148 |
| PfeI | GAWTC | 3 cut(s) | 236, 698, 774 |
| PflFI | GACNNNGTC | 1 cut(s) | 588 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 545 |
| Psp6I | CCWGG | 3 cut(s) | 76, 325, 373 |
| PspGI | CCWGG | 3 cut(s) | 76, 325, 373 |
| PspN4I | GGNNCC | 3 cut(s) | 579, 633, 716 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 24, 56, 214, 246 |
| PstNI | CAGNNNCTG | 1 cut(s) | 398 |
| PsuI | RGATCY | 2 cut(s) | 631, 714 |
| PsyI | GACNNNGTC | 1 cut(s) | 588 |
| SaqAI | TTAA | 1 cut(s) | 552 |
| Sau3AI | GATC | 5 cut(s) | 274, 526, 631, 714, 757 |
| ScrFI | CCNGG | 3 cut(s) | 78, 327, 375 |
| SduI | GDGCHC | 1 cut(s) | 8 |
| SexAI | ACCWGGT | 1 cut(s) | 373 |
| SfaNI | GCATC | 2 cut(s) | 16, 334 |
| SmlI | CTYRAG | 1 cut(s) | 469 |
| SmoI | CTYRAG | 1 cut(s) | 469 |
| Sse9I | AATT | 1 cut(s) | 70 |
| SsiI | CCGC | 1 cut(s) | 313 |
| SspMI | CTAG | 2 cut(s) | 264, 582 |
| StyD4I | CCNGG | 3 cut(s) | 76, 325, 373 |
| TaaI | ACNGT | 3 cut(s) | 56, 385, 590 |
| TaqI | TCGA | 2 cut(s) | 512, 592 |
| TasI | AATT | 1 cut(s) | 70 |
| TfiI | GAWTC | 3 cut(s) | 236, 698, 774 |
| Tru1I | TTAA | 1 cut(s) | 552 |
| Tru9I | TTAA | 1 cut(s) | 552 |
| TscAI | CASTG | 1 cut(s) | 61 |
| TseFI | GTSAC | 1 cut(s) | 250 |
| Tsp45I | GTSAC | 1 cut(s) | 250 |
| TspGWI | ACGGA | 1 cut(s) | 728 |
| TspRI | CASTG | 1 cut(s) | 61 |
| Tth111I | GACNNNGTC | 1 cut(s) | 588 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 545 |
| XmiI | GTMKAC | 1 cut(s) | 742 |
| XmnI | GAANNNNTTC | 1 cut(s) | 148 |
| XspI | CTAG | 2 cut(s) | 264, 582 |