RLG00000018608

Lignin degradation and detoxification of lignin-derived products

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
32489458 .. 32491698
2241 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018608

Sequence Viewer

Length: 1710 bp
ATGAAGGTTTCCAGAATAAGCCTGCATCTGCAACTTTTGGGGTTGTTATTGGCTTTGAATGGCTTCCTCCTCCATTGCCAAGCTTGGCCAGCTCGCTACACTTTTGTGGTGGAAAACACTCCATACAAGAGACTCTGCAGCACAAAGAACATCTTGACTGTAAATGGCCAGTTTCCGGGACCGACTTTGTATGCTCACAAAGGAGACACTATCATCGTCGATGTCATTAACAAAGGCAATCGTAACATTACTCTCCACTGGCATGGTGTTGGGCAACCAAGATATCCATGGTCGGACGGACCAGAGTATATCACACAGTGCCCAATTCAACCAGGGGCCAAGTTCACCCAAAAGATCATTTTCTCGAAGGAGGAAGGCACCCTTTGGTGGCATGCTCACAGTGAGTGGGATCGTGCTACTGTCCATGGTCCCATCATCATATACCCCAACAAGAACAACAAATACCCTTTTGCCAAGCCTCATGCAGAAATTCCAATCATATTAGGAGAGTGGTGGAAGGTAGATATAGGGACGCTTTATACTCAAACTATTCAATCCGGAGGGGACCCTAATACTTCCGACGCTTACCTCATCAATGGTCAACCTGGCGATCTGTATCCATGCTCTAAATCAGAGACGTTCAAGTTGATGGTGGATTATGGCAAAACCTACCTACTGAGACTAATCAACTCCGGTGTGCAAGAGATTCTGTTTTTCGCCATCGCCAACCACAAAGTTACAGTTGTAGGGACAGATGCTAGCTACACCAAGCCTTTCACAACCGATTATGTCACCATCTCACCTGGTCAAACCATTGACCTTTTGCTCCATGCTAATCAGAGGCCTAACCACTATTACATGGCCGCTACAGCCTACGTGGGTGGCGCTGTTCCTTATGATAACACCACCACCACAGCCCTACTACAATACACGAATCGGGGTTACACCCCTTCTTCAACCCCTTTGTTTCCTAATCTTCCTGCTCACAATGACACTAATGCATCAATTCATTTTAGTAGTAGTCTCAGGAGCTTGGCTGATAAAAATCACCCCATTGACGTTCCACTAAAAATTACAACTCCCTTGTTTTATACCGTCTCCGTCAACACGTTCCAGTGCCCCAATAATTCATGCGCCGGGCCTAATGGGACGCGTCTGGCTGCTAGTATAAACAACATTAGCTTTGTGAACCCTAGCATTGACATACTACAAGCTTACTATTACCATGTCAACGGGCAATTTGGAACTCGGTTTCCAAGTTCCCCGCCTCTGCTGTTTGACTTTACAGCGCAGTACCCTCCGCTGTACCTTCAGACCCCAAAACGAGGGACAGAAGTGAAGGTACTGGAGTACAACGCGACAGTGGAGCTTGTGTTTCAGGGGACTAATTTGGTGGCAGGGGATGACCATCCAATGCATCTTCATGGTTACAGTTTCTATGTGGTTGGATTGGGGCTTGGGAACTTTGACAAGGATAAGGACCCTTTGAAATATAATCTTGTTGATCCTCCTCTTCAAAACACCATTGCTGTCCCTGTAAATGGGTGGGCTACCATCAGATTCAGGGCTGATAATCCTGGAGTTTGGTTTATGCATTGCCATCTGGATAGGCATATGTCATGGGGGATGGATACGACATTCATTGTGAAAAATGGAAAGGGACCTGAAGCTCAAATCTTACCTCCACCACCAGATATGCCACCTTGCTGA

Protein Analysis

570

Amino Acids

63.55

Weight (kDa)

7.67

Isoelectric Point (pI)

34.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 37 - 151 4.1e-39 Multicopper oxidase
Cu-oxidase PF00394 164 - 312 2.3e-40 Multicopper oxidase
Cu-oxidase_2 PF07731 418 - 552 2.6e-41 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000359)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48100
fragaria_vesca FvH4_1g24380 FvH4_2g05800 FvH4_5g30730
malus_domestica MD01G1234900.v1.1 MD01G1235100.v1.1 MD01G1235200.v1.1 MD07G1307400.v1.1 MD07G1308000.v1.1 MD10G1042300.v1.1 MD10G1042400.v1.1 MD10G1042500.v1.1 MD10G1042700.v1.1
prunus_persica Prupe.2G325200_v2.0.a1 Prupe.6G242000_v2.0.a1 Prupe.8G046800_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1
pyrus_communis pycom01g24320 pycom01g24330 pycom07g28020 pycom10g02950 pycom17g03690
rosa_chinensis RchiOBHm_Chr1g0384031 RchiOBHm_Chr2g0120941 RchiOBHm_Chr2g0120971 RchiOBHm_Chr2g0121051 RchiOBHm_Chr2g0121181 RchiOBHm_Chr2g0121211 RchiOBHm_Chr3g0473931 RchiOBHm_Chr3g0473941 RchiOBHm_Chr6g0257941 RchiOBHm_Chr6g0284781
rosa_laevigata RLG00000008541 RLG00000014737 RLG00000018604 RLG00000018607 RLG00000018608 RLG00000018610 RLG00000018611 RLG00000018613 RLG00000023967 RLG00000023970 RLG00000026078 RLG00000035183
rosa_multiflora Rmu_sc0000079.1_g000043 Rmu_sc0000079.1_g000062 Rmu_sc0000079.1_g000069 Rmu_sc0000621.1_g000019 Rmu_sc0000621.1_g000025 Rmu_sc0000621.1_g000041 Rmu_sc0000652.1_g000018 Rmu_sc0002414.1_g000030 Rmu_sc0002414.1_g000033 Rmu_sc0002843.1_g000016 Rmu_sc0005137.1_g000035 Rmu_sc0005139.1_g000021
rosa_roxburghii Rroxscaffold_2G00122530 Rroxscaffold_2G00122570 Rroxscaffold_2G00122580 Rroxscaffold_2G00122650 Rroxscaffold_4G00277080 Rroxscaffold_6G00407610 Rroxscaffold_6G00407620 Rroxscaffold_7G00209050
rosa_rugosa Rorug01G0444300 Rorug02G0232700 Rorug02G0232700 Rorug02G0232900 Rorug03G0137100 Rorug05G0565600 Rorug05G0566500
rosa_samantha Rh1BG427300 Rh1CG440100 Rh2CG278100 Rh2CG278200 Rh2CG278700 Rh2CG278800 Rh2CG279100 Rh2DG314200 Rh2DG314300 Rh2DG314600 Rh3AG187200 Rh3DG211700 Rh3DG211800 Rh5AG356600 Rh6BG078000 Rh6BG078700 Rh6CG073300 Rh6DG070300 Rh6DG190200 Rh6DG274700 Rh7BG365900
rosa_wichuraiana Rw0G018400 Rw1G040270 Rw2G023160 Rw2G023170 Rw2G023190 Rw2G023200 Rw2G023220 Rw2G023230 Rw3G017140 Rw3G017150 Rw4G012840 Rw6G007580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 377
AccII CGCG 2 cut(s) 1153, 1358
AccIII TCCGGA 1 cut(s) 557
AciI CCGC 3 cut(s) 864, 1265, 1301
AclWI GGATC 2 cut(s) 417, 1499
AcoI YGGCCR 3 cut(s) 86, 166, 861
AcsI RAATTY 1 cut(s) 489
AcuI CTGAAG 2 cut(s) 1295, 1686
AdeI CACNNNGTG 1 cut(s) 318
AfaI GTAC 4 cut(s) 1295, 1307, 1344, 1352
AfiI CCNNNNNNNGG 4 cut(s) 175, 387, 1325, 1541
AflIII ACRYGT 2 cut(s) 1107, 1151
AgsI TTSAA 7 cut(s) 58, 329, 554, 643, 957, 1489, 1517
AjnI CCWGG 4 cut(s) 331, 604, 802, 1576
AleI CACNNNNGTG 1 cut(s) 104
AloI GAACNNNNNNTCC 2 cut(s) 1237, 1269
AluBI AGCT 8 cut(s) 83, 92, 762, 1032, 1182, 1214, 1369, 1670
AluI AGCT 8 cut(s) 83, 92, 762, 1032, 1182, 1214, 1369, 1670
Alw26I GTCTC 6 cut(s) 124, 198, 629, 673, 1028, 1102
AlwI GGATC 2 cut(s) 417, 1499
Aor13HI TCCGGA 1 cut(s) 557
AoxI GGCC 6 cut(s) 86, 166, 336, 842, 861, 1139
ApeKI GCWGC 2 cut(s) 138, 1160
ApoI RAATTY 1 cut(s) 489
Asp700I GAANNNNTTC 1 cut(s) 62
AspLEI GCGC 3 cut(s) 887, 1136, 1291
AspS9I GGNCC 8 cut(s) 179, 299, 336, 428, 565, 1139, 1480, 1661
AsuC2I CCSGG 2 cut(s) 177, 1138
AsuHPI GGTGA 4 cut(s) 337, 784, 792, 1040
AsuNHI GCTAGC 1 cut(s) 758
AvaII GGWCC 6 cut(s) 179, 299, 428, 565, 1480, 1661
BaeGI GKGCMC 2 cut(s) 323, 1121
BaeI ACNNNNGTAYC 2 cut(s) 1334, 1367
BalI TGGCCA 2 cut(s) 88, 168
BanI GGYRCC 1 cut(s) 377
BarI GAAGNNNNNNTAC 2 cut(s) 1326, 1358
BbvI GCAGC 2 cut(s) 150, 1147
BccI CCATC 8 cut(s) 440, 643, 728, 803, 1416, 1562, 1608, 1621
BciT130I CCWGG 4 cut(s) 333, 606, 804, 1578
BciVI GTATCC 2 cut(s) 627, 1624
BcnI CCSGG 2 cut(s) 177, 1138
BcoDI GTCTC 6 cut(s) 124, 198, 629, 673, 1028, 1102
BfaI CTAG 3 cut(s) 759, 1164, 1194
BfmI CTRYAG 2 cut(s) 136, 867
BfoI RGCGCY 1 cut(s) 888
BfuI GTATCC 2 cut(s) 627, 1624
BisI GCNGC 3 cut(s) 139, 864, 1161
BlsI GCNGC 3 cut(s) 140, 865, 1162
Bme1390I CCNGG 6 cut(s) 177, 333, 606, 804, 1138, 1578
Bme18I GGWCC 6 cut(s) 179, 299, 428, 565, 1480, 1661
BmgT120I GGNCC 8 cut(s) 179, 299, 336, 428, 565, 1139, 1480, 1661
BmiI GGNNCC 8 cut(s) 180, 337, 379, 430, 566, 567, 1482, 1662
BmrFI CCNGG 6 cut(s) 177, 333, 606, 804, 1138, 1578
BmsI GCATC 4 cut(s) 34, 745, 1010, 1426
BmtI GCTAGC 1 cut(s) 762
BpmI CTGGAG 2 cut(s) 1367, 1599
BpuMI CCSGG 2 cut(s) 177, 1138
BsaAI YACGTR 1 cut(s) 877
BsaBI GATNNNNATC 3 cut(s) 615, 1044, 1407
BsaJI CCNNGG 3 cut(s) 287, 332, 424
BsaWI WCCGGW 2 cut(s) 557, 692
BsaXI ACNNNNNCTCC 2 cut(s) 1358, 1388
Bsc4I CCNNNNNNNGG 4 cut(s) 175, 387, 1325, 1541
Bse1I ACTGG 4 cut(s) 169, 263, 1114, 1350
Bse3DI GCAATG 3 cut(s) 73, 1524, 1594
Bse8I GATNNNNATC 3 cut(s) 615, 1044, 1407
BseAI TCCGGA 1 cut(s) 557
BseBI CCWGG 4 cut(s) 333, 606, 804, 1578
BseDI CCNNGG 3 cut(s) 287, 332, 424
BseGI GGATG 3 cut(s) 1408, 1408, 1632
BseJI GATNNNNATC 3 cut(s) 615, 1044, 1407
BseLI CCNNNNNNNGG 4 cut(s) 175, 387, 1325, 1541
BseMI GCAATG 3 cut(s) 73, 1524, 1594
BseMII CTCAG 2 cut(s) 668, 1039
BseNI ACTGG 4 cut(s) 169, 263, 1114, 1350
BseRI GAGGAG 2 cut(s) 59, 1500
BseSI GKGCMC 2 cut(s) 323, 1121
BseXI GCAGC 2 cut(s) 150, 1147
Bsh1236I CGCG 2 cut(s) 1153, 1358
BshFI GGCC 6 cut(s) 88, 168, 338, 844, 863, 1141
BshNI GGYRCC 1 cut(s) 377
BsiSI CCGG 4 cut(s) 176, 558, 693, 1137
BslI CCNNNNNNNGG 4 cut(s) 175, 387, 1325, 1541
BsmAI GTCTC 6 cut(s) 124, 198, 629, 673, 1028, 1102
BsmBI CGTCTC 2 cut(s) 629, 1102
BsnI GGCC 6 cut(s) 88, 168, 338, 844, 863, 1141
Bsp1286I GDGCHC 2 cut(s) 323, 1121
Bsp13I TCCGGA 1 cut(s) 557
Bsp143I GATC 4 cut(s) 354, 409, 610, 1504
Bsp19I CCATGG 2 cut(s) 287, 424
BspACI CCGC 3 cut(s) 864, 1265, 1301
BspANI GGCC 6 cut(s) 88, 168, 338, 844, 863, 1141
BspCNI CTCAG 2 cut(s) 669, 1038
BspEI TCCGGA 1 cut(s) 557
BspFNI CGCG 2 cut(s) 1153, 1358
BspLI GGNNCC 8 cut(s) 180, 337, 379, 430, 566, 567, 1482, 1662
BspMAI CTGCAG 1 cut(s) 140
BspOI GCTAGC 1 cut(s) 762
BspPI GGATC 2 cut(s) 417, 1499
BspT107I GGYRCC 1 cut(s) 377
BsrDI GCAATG 3 cut(s) 73, 1524, 1594
BsrI ACTGG 4 cut(s) 169, 263, 1114, 1350
BssECI CCNNGG 3 cut(s) 287, 332, 424
BssMI GATC 4 cut(s) 354, 409, 610, 1504
BssT1I CCWWGG 2 cut(s) 287, 424
Bst2UI CCWGG 4 cut(s) 333, 606, 804, 1578
Bst4CI ACNGT 8 cut(s) 160, 318, 401, 421, 742, 1096, 1363, 1433
Bst6I CTCTTC 1 cut(s) 1518
BstBAI YACGTR 1 cut(s) 877
BstC8I GCNNGC 5 cut(s) 23, 90, 94, 393, 760
BstDEI CTNAG 2 cut(s) 677, 1025
BstDSI CCRYGG 2 cut(s) 287, 424
BstF5I GGATG 3 cut(s) 1408, 1408, 1632
BstFNI CGCG 2 cut(s) 1153, 1358
BstH2I RGCGCY 1 cut(s) 888
BstHHI GCGC 3 cut(s) 887, 1136, 1291
BstKTI GATC 4 cut(s) 357, 412, 613, 1507
BstMAI GTCTC 6 cut(s) 124, 198, 629, 673, 1028, 1102
BstMBI GATC 4 cut(s) 354, 409, 610, 1504
BstMWI GCNNNNNNNGC 2 cut(s) 89, 869
BstNI CCWGG 4 cut(s) 333, 606, 804, 1578
BstNSI RCATGY 1 cut(s) 395
BstSCI CCNGG 6 cut(s) 175, 331, 604, 802, 1136, 1576
BstSFI CTRYAG 2 cut(s) 136, 867
BstSLI GKGCMC 2 cut(s) 323, 1121
BstUI CGCG 2 cut(s) 1153, 1358
BstV1I GCAGC 2 cut(s) 150, 1147
BstXI CCANNNNNNTGG 1 cut(s) 263
BsuI GTATCC 2 cut(s) 627, 1624
BsuRI GGCC 6 cut(s) 88, 168, 338, 844, 863, 1141
BtgI CCRYGG 2 cut(s) 287, 424
BtgZI GCGATG 1 cut(s) 706
BtsCI GGATG 3 cut(s) 1408, 1408, 1632
BtsIMutI CAGTG 5 cut(s) 256, 323, 406, 1121, 1368
Cac8I GCNNGC 5 cut(s) 23, 90, 94, 393, 760
CfoI GCGC 3 cut(s) 887, 1136, 1291
Cfr13I GGNCC 8 cut(s) 179, 299, 336, 428, 565, 1139, 1480, 1661
CseI GACGC 4 cut(s) 541, 590, 1142, 1159
CsiI ACCWGGT 1 cut(s) 802
Csp6I GTAC 4 cut(s) 1294, 1306, 1343, 1351
CviQI GTAC 4 cut(s) 1294, 1306, 1343, 1351
DdeI CTNAG 2 cut(s) 677, 1025
DpnI GATC 4 cut(s) 356, 411, 612, 1506
DpnII GATC 4 cut(s) 354, 409, 610, 1504
DraIII CACNNNGTG 1 cut(s) 318
EaeI YGGCCR 3 cut(s) 86, 166, 861
Eam1104I CTCTTC 1 cut(s) 1518
EarI CTCTTC 1 cut(s) 1518
Eco130I CCWWGG 2 cut(s) 287, 424
Eco147I AGGCCT 1 cut(s) 844
Eco32I GATATC 1 cut(s) 284
Eco47I GGWCC 6 cut(s) 179, 299, 428, 565, 1480, 1661
Eco57I CTGAAG 2 cut(s) 1295, 1686
EcoO109I RGGNCCY 3 cut(s) 565, 1480, 1661
EcoRII CCWGG 4 cut(s) 331, 604, 802, 1576
EcoRV GATATC 1 cut(s) 284
EcoT14I CCWWGG 2 cut(s) 287, 424
EcoT22I ATGCAT 3 cut(s) 1003, 1419, 1596
ErhI CCWWGG 2 cut(s) 287, 424
Esp3I CGTCTC 2 cut(s) 629, 1102
FalI AAGNNNNNCTT 4 cut(s) 137, 169, 366, 398
FauI CCCGC 1 cut(s) 1272
FauNDI CATATG 1 cut(s) 1614
Fnu4HI GCNGC 3 cut(s) 139, 864, 1161
FokI GGATG 3 cut(s) 1395, 1415, 1639
Fsp4HI GCNGC 3 cut(s) 139, 864, 1161
FspBI CTAG 3 cut(s) 759, 1164, 1194
GlaI GCGC 3 cut(s) 886, 1135, 1290
GluI GCNGC 3 cut(s) 139, 864, 1161
GsuI CTGGAG 2 cut(s) 1367, 1599
HaeII RGCGCY 1 cut(s) 888
HaeIII GGCC 6 cut(s) 88, 168, 338, 844, 863, 1141
HapII CCGG 4 cut(s) 176, 558, 693, 1137
HgaI GACGC 4 cut(s) 541, 590, 1142, 1159
HhaI GCGC 3 cut(s) 887, 1136, 1291
Hin6I GCGC 3 cut(s) 885, 1134, 1289
HinP1I GCGC 3 cut(s) 885, 1134, 1289
HincII GTYRAC 3 cut(s) 602, 1105, 1231
HindII GTYRAC 3 cut(s) 602, 1105, 1231
HindIII AAGCTT 2 cut(s) 81, 1212
HinfI GANTC 4 cut(s) 132, 706, 934, 1560
HpaII CCGG 4 cut(s) 176, 558, 693, 1137
HphI GGTGA 4 cut(s) 337, 784, 792, 1040
Hpy166II GTNNAC 5 cut(s) 345, 602, 1105, 1189, 1231
Hpy188I TCNGA 6 cut(s) 295, 580, 634, 840, 1314, 1559
Hpy188III TCNNGA 6 cut(s) 12, 154, 364, 558, 1027, 1604
Hpy8I GTNNAC 5 cut(s) 345, 602, 1105, 1189, 1231
Hpy99I CGWCG 2 cut(s) 221, 584
HpyAV CCTTC 6 cut(s) 361, 368, 511, 960, 1319, 1333
HpyCH4III ACNGT 8 cut(s) 160, 318, 401, 421, 742, 1096, 1363, 1433
HpyCH4IV ACGT 4 cut(s) 638, 876, 1059, 1109
HpyCH4V TGCA 8 cut(s) 25, 31, 138, 485, 700, 1001, 1417, 1594
HpyF10VI GCNNNNNNNGC 2 cut(s) 89, 869
HpyF3I CTNAG 2 cut(s) 677, 1025
HpySE526I ACGT 4 cut(s) 638, 876, 1059, 1109
HspAI GCGC 3 cut(s) 885, 1134, 1289
KflI GGGWCCC 1 cut(s) 565
Kpn2I TCCGGA 1 cut(s) 557
Kzo9I GATC 4 cut(s) 354, 409, 610, 1504
LmnI GCTCC 3 cut(s) 831, 1029, 1366
Lsp1109I GCAGC 2 cut(s) 150, 1147
LweI GCATC 4 cut(s) 34, 745, 1010, 1426
MabI ACCWGGT 1 cut(s) 802
MaeI CTAG 3 cut(s) 759, 1164, 1194
MaeII ACGT 4 cut(s) 638, 876, 1059, 1109
MaeIII GTNAC 5 cut(s) 242, 736, 790, 941, 1427
MalI GATC 4 cut(s) 356, 411, 612, 1506
MboI GATC 4 cut(s) 354, 409, 610, 1504
MboII GAAGA 4 cut(s) 945, 968, 1412, 1505
MhlI GDGCHC 2 cut(s) 323, 1121
MlsI TGGCCA 2 cut(s) 88, 168
MluCI AATT 7 cut(s) 324, 489, 1005, 1071, 1126, 1238, 1387
MluI ACGCGT 1 cut(s) 1151
MluNI TGGCCA 2 cut(s) 88, 168
MlyI GAGTC 1 cut(s) 126
MmeI TCCRAC 3 cut(s) 273, 603, 1426
Mox20I TGGCCA 2 cut(s) 88, 168
Mph1103I ATGCAT 3 cut(s) 1003, 1419, 1596
MroI TCCGGA 1 cut(s) 557
MroXI GAANNNNTTC 1 cut(s) 62
MscI TGGCCA 2 cut(s) 88, 168
MseI TTAA 1 cut(s) 228
MslI CAYNNNNRTG 3 cut(s) 104, 261, 1422
Msp20I TGGCCA 2 cut(s) 88, 168
MspA1I CMGCKG 1 cut(s) 1303
MspI CCGG 4 cut(s) 176, 558, 693, 1137
MspR9I CCNGG 6 cut(s) 177, 333, 606, 804, 1138, 1578
MvaI CCWGG 4 cut(s) 333, 606, 804, 1578
MvnI CGCG 2 cut(s) 1153, 1358
MwoI GCNNNNNNNGC 2 cut(s) 89, 869
NciI CCSGG 2 cut(s) 177, 1138
NcoI CCATGG 2 cut(s) 287, 424
NdeI CATATG 1 cut(s) 1614
NdeII GATC 4 cut(s) 354, 409, 610, 1504
NheI GCTAGC 1 cut(s) 758
NlaIV GGNNCC 8 cut(s) 180, 337, 379, 430, 566, 567, 1482, 1662
NmuCI GTSAC 1 cut(s) 790
NsiI ATGCAT 3 cut(s) 1003, 1419, 1596
NspI RCATGY 1 cut(s) 395
OliI CACNNNNGTG 1 cut(s) 104
PaeI GCATGC 1 cut(s) 395
PceI AGGCCT 1 cut(s) 844
PdmI GAANNNNTTC 1 cut(s) 62
PfeI GAWTC 3 cut(s) 706, 934, 1560
PfoI TCCNGGA 2 cut(s) 175, 1576
PkrI GCNGC 3 cut(s) 140, 865, 1162
PleI GAGTC 1 cut(s) 126
PpsI GAGTC 1 cut(s) 126
Ppu21I YACGTR 1 cut(s) 877
PpuMI RGGWCCY 3 cut(s) 565, 1480, 1661
Psp5II RGGWCCY 3 cut(s) 565, 1480, 1661
Psp6I CCWGG 4 cut(s) 331, 604, 802, 1576
PspGI CCWGG 4 cut(s) 331, 604, 802, 1576
PspN4I GGNNCC 8 cut(s) 180, 337, 379, 430, 566, 567, 1482, 1662
PspPI GGNCC 8 cut(s) 179, 299, 336, 428, 565, 1139, 1480, 1661
PspPPI RGGWCCY 3 cut(s) 565, 1480, 1661
PsrI GAACNNNNNNTAC 2 cut(s) 446, 478
PstI CTGCAG 1 cut(s) 140
RsaI GTAC 4 cut(s) 1295, 1307, 1344, 1352
RsaNI GTAC 4 cut(s) 1294, 1306, 1343, 1351
RseI CAYNNNNRTG 3 cut(s) 104, 261, 1422
SaqAI TTAA 1 cut(s) 228
SatI GCNGC 3 cut(s) 139, 864, 1161
Sau3AI GATC 4 cut(s) 354, 409, 610, 1504
Sau96I GGNCC 8 cut(s) 179, 299, 336, 428, 565, 1139, 1480, 1661
SchI GAGTC 1 cut(s) 126
ScrFI CCNGG 6 cut(s) 177, 333, 606, 804, 1138, 1578
SduI GDGCHC 2 cut(s) 323, 1121
SexAI ACCWGGT 1 cut(s) 802
SfaNI GCATC 4 cut(s) 34, 745, 1010, 1426
SfcI CTRYAG 2 cut(s) 136, 867
SinI GGWCC 6 cut(s) 179, 299, 428, 565, 1480, 1661
SmiMI CAYNNNNRTG 3 cut(s) 104, 261, 1422
SphI GCATGC 1 cut(s) 395
Sse9I AATT 7 cut(s) 324, 489, 1005, 1071, 1126, 1238, 1387
SseBI AGGCCT 1 cut(s) 844
SsiI CCGC 3 cut(s) 864, 1265, 1301
SspMI CTAG 3 cut(s) 759, 1164, 1194
StuI AGGCCT 1 cut(s) 844
StyD4I CCNGG 6 cut(s) 175, 331, 604, 802, 1136, 1576
StyI CCWWGG 2 cut(s) 287, 424
TaaI ACNGT 8 cut(s) 160, 318, 401, 421, 742, 1096, 1363, 1433
TaiI ACGT 4 cut(s) 641, 879, 1062, 1112
TaqI TCGA 2 cut(s) 219, 365
TaqII GACCGA 1 cut(s) 196
TasI AATT 7 cut(s) 324, 489, 1005, 1071, 1126, 1238, 1387
TatI WGTACW 1 cut(s) 1350
TauI GCSGC 1 cut(s) 866
TfiI GAWTC 3 cut(s) 706, 934, 1560
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TscAI CASTG 5 cut(s) 263, 323, 406, 1121, 1368
TseFI GTSAC 1 cut(s) 790
TseI GCWGC 2 cut(s) 138, 1160
Tsp45I GTSAC 1 cut(s) 790
TspDTI ATGAA 5 cut(s) 17, 998, 1119, 1412, 1630
TspGWI ACGGA 2 cut(s) 312, 1090
TspRI CASTG 5 cut(s) 263, 323, 406, 1121, 1368
VpaK11BI GGWCC 6 cut(s) 179, 299, 428, 565, 1480, 1661
XapI RAATTY 1 cut(s) 489
XceI RCATGY 1 cut(s) 395
XcmI CCANNNNNNNNNTGG 1 cut(s) 285
XmnI GAANNNNTTC 1 cut(s) 62
XspI CTAG 3 cut(s) 759, 1164, 1194
Zsp2I ATGCAT 3 cut(s) 1003, 1419, 1596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.