Lignin degradation and detoxification of lignin-derived products
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 672 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 249 |
| AciI | CCGC | 7 cut(s) | 549, 684, 873, 903, 1149, 1253, 1673 |
| AclI | AACGTT | 1 cut(s) | 176 |
| AclWI | GGATC | 2 cut(s) | 408, 1487 |
| AcoI | YGGCCR | 1 cut(s) | 157 |
| AcsI | RAATTY | 5 cut(s) | 479, 931, 1246, 1450, 1662 |
| AcuI | CTGAAG | 1 cut(s) | 1487 |
| AfaI | GTAC | 2 cut(s) | 1295, 1340 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 249, 442, 443, 1529, 1679 |
| AgsI | TTSAA | 6 cut(s) | 22, 545, 570, 771, 1219, 1552 |
| AjiI | CACGTC | 1 cut(s) | 1048 |
| AjnI | CCWGG | 2 cut(s) | 322, 1564 |
| AleI | CACNNNNGTG | 2 cut(s) | 95, 1322 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1225, 1257 |
| AluBI | AGCT | 8 cut(s) | 18, 74, 637, 753, 1020, 1170, 1202, 1277 |
| AluI | AGCT | 8 cut(s) | 18, 74, 637, 753, 1020, 1170, 1202, 1277 |
| Alw26I | GTCTC | 1 cut(s) | 549 |
| AlwI | GGATC | 2 cut(s) | 408, 1487 |
| AoxI | GGCC | 3 cut(s) | 157, 1127, 1648 |
| ApoI | RAATTY | 5 cut(s) | 479, 931, 1246, 1450, 1662 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 540 |
| AspA2I | CCTAGG | 1 cut(s) | 1651 |
| AspLEI | GCGC | 1 cut(s) | 1660 |
| AspS9I | GGNCC | 5 cut(s) | 170, 290, 1127, 1468, 1648 |
| AsuC2I | CCSGG | 3 cut(s) | 168, 597, 795 |
| AsuHPI | GGTGA | 1 cut(s) | 1336 |
| AsuNHI | GCTAGC | 1 cut(s) | 749 |
| AvaII | GGWCC | 3 cut(s) | 170, 290, 1468 |
| AvrII | CCTAGG | 1 cut(s) | 1651 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 189, 222, 1322, 1355 |
| BccI | CCATC | 3 cut(s) | 251, 1404, 1520 |
| BceAI | ACGGC | 3 cut(s) | 172, 671, 1273 |
| BciT130I | CCWGG | 2 cut(s) | 324, 1566 |
| BcnI | CCSGG | 3 cut(s) | 168, 597, 795 |
| BcoDI | GTCTC | 1 cut(s) | 549 |
| BfaI | CTAG | 2 cut(s) | 750, 1652 |
| BfmI | CTRYAG | 1 cut(s) | 423 |
| BfuAI | ACCTGC | 1 cut(s) | 672 |
| BisI | GCNGC | 1 cut(s) | 1149 |
| BlnI | CCTAGG | 1 cut(s) | 1651 |
| BlsI | GCNGC | 1 cut(s) | 1150 |
| Bme1390I | CCNGG | 5 cut(s) | 168, 324, 597, 795, 1566 |
| Bme18I | GGWCC | 3 cut(s) | 170, 290, 1468 |
| BmgBI | CACGTC | 1 cut(s) | 1048 |
| BmgT120I | GGNCC | 5 cut(s) | 170, 290, 1127, 1468, 1648 |
| BmiI | GGNNCC | 4 cut(s) | 328, 448, 885, 1470 |
| BmrFI | CCNGG | 5 cut(s) | 168, 324, 597, 795, 1566 |
| BmsI | GCATC | 5 cut(s) | 66, 736, 998, 1392, 1414 |
| BmtI | GCTAGC | 1 cut(s) | 753 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1328, 1360 |
| BpmI | CTGGAG | 2 cut(s) | 213, 1355 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1278 |
| BpuMI | CCSGG | 3 cut(s) | 168, 597, 795 |
| Bsa29I | ATCGAT | 2 cut(s) | 1491, 1593 |
| BsaBI | GATNNNNATC | 2 cut(s) | 606, 1395 |
| BsaJI | CCNNGG | 5 cut(s) | 278, 415, 925, 1411, 1651 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 775, 805, 1346, 1376 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 249, 442, 443, 1529, 1679 |
| Bse1I | ACTGG | 5 cut(s) | 160, 254, 1005, 1152, 1338 |
| Bse3DI | GCAATG | 4 cut(s) | 64, 711, 849, 1256 |
| Bse8I | GATNNNNATC | 2 cut(s) | 606, 1395 |
| BseBI | CCWGG | 2 cut(s) | 324, 1566 |
| BseCI | ATCGAT | 2 cut(s) | 1491, 1593 |
| BseDI | CCNNGG | 5 cut(s) | 278, 415, 925, 1411, 1651 |
| BseGI | GGATG | 3 cut(s) | 243, 1396, 1624 |
| BseJI | GATNNNNATC | 2 cut(s) | 606, 1395 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 249, 442, 443, 1529, 1679 |
| BseMI | GCAATG | 4 cut(s) | 64, 711, 849, 1256 |
| BseMII | CTCAG | 5 cut(s) | 260, 372, 682, 756, 1292 |
| BseNI | ACTGG | 5 cut(s) | 160, 254, 1005, 1152, 1338 |
| BseRI | GAGGAG | 3 cut(s) | 72, 567, 1488 |
| BseYI | CCCAGC | 2 cut(s) | 878, 1124 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1597 |
| BshFI | GGCC | 3 cut(s) | 159, 1129, 1650 |
| BshVI | ATCGAT | 2 cut(s) | 1491, 1593 |
| BsiEI | CGRYCG | 1 cut(s) | 1597 |
| BsiSI | CCGG | 4 cut(s) | 168, 597, 651, 795 |
| BslFI | GGGAC | 4 cut(s) | 382, 1150, 1384, 1505 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 249, 442, 443, 1529, 1679 |
| BsmAI | GTCTC | 1 cut(s) | 549 |
| BsmBI | CGTCTC | 1 cut(s) | 549 |
| BsmFI | GGGAC | 4 cut(s) | 382, 1150, 1384, 1505 |
| BsmI | GAATGC | 1 cut(s) | 1689 |
| BsnI | GGCC | 3 cut(s) | 159, 1129, 1650 |
| Bsp143I | GATC | 4 cut(s) | 400, 601, 1492, 1594 |
| Bsp19I | CCATGG | 2 cut(s) | 278, 1411 |
| BspACI | CCGC | 7 cut(s) | 549, 684, 873, 903, 1149, 1253, 1673 |
| BspANI | GGCC | 3 cut(s) | 159, 1129, 1650 |
| BspCNI | CTCAG | 5 cut(s) | 261, 371, 681, 755, 1291 |
| BspDI | ATCGAT | 2 cut(s) | 1491, 1593 |
| BspLI | GGNNCC | 4 cut(s) | 328, 448, 885, 1470 |
| BspMI | ACCTGC | 1 cut(s) | 672 |
| BspOI | GCTAGC | 1 cut(s) | 753 |
| BspPI | GGATC | 2 cut(s) | 408, 1487 |
| BsrDI | GCAATG | 4 cut(s) | 64, 711, 849, 1256 |
| BsrI | ACTGG | 5 cut(s) | 160, 254, 1005, 1152, 1338 |
| BssECI | CCNNGG | 5 cut(s) | 278, 415, 925, 1411, 1651 |
| BssMI | GATC | 4 cut(s) | 400, 601, 1492, 1594 |
| BssT1I | CCWWGG | 3 cut(s) | 278, 1411, 1651 |
| Bst2UI | CCWGG | 2 cut(s) | 324, 1566 |
| Bst4CI | ACNGT | 9 cut(s) | 52, 126, 151, 290, 412, 419, 733, 1351, 1586 |
| Bst6I | CTCTTC | 1 cut(s) | 1506 |
| BstC8I | GCNNGC | 4 cut(s) | 384, 751, 1200, 1314 |
| BstDEI | CTNAG | 5 cut(s) | 269, 358, 668, 742, 1278 |
| BstDSI | CCRYGG | 4 cut(s) | 278, 415, 925, 1411 |
| BstF5I | GGATG | 3 cut(s) | 243, 1396, 1624 |
| BstHHI | GCGC | 1 cut(s) | 1660 |
| BstKTI | GATC | 4 cut(s) | 403, 604, 1495, 1597 |
| BstMAI | GTCTC | 1 cut(s) | 549 |
| BstMBI | GATC | 4 cut(s) | 400, 601, 1492, 1594 |
| BstMCI | CGRYCG | 1 cut(s) | 1597 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 860 |
| BstNI | CCWGG | 2 cut(s) | 324, 1566 |
| BstNSI | RCATGY | 1 cut(s) | 386 |
| BstSCI | CCNGG | 5 cut(s) | 166, 322, 595, 793, 1564 |
| BstSFI | CTRYAG | 1 cut(s) | 423 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 254, 1220 |
| Bsu15I | ATCGAT | 2 cut(s) | 1491, 1593 |
| BsuRI | GGCC | 3 cut(s) | 159, 1129, 1650 |
| BsuTUI | ATCGAT | 2 cut(s) | 1491, 1593 |
| BtgI | CCRYGG | 4 cut(s) | 278, 415, 925, 1411 |
| BtgZI | GCGATG | 1 cut(s) | 1498 |
| BtrI | CACGTC | 1 cut(s) | 1048 |
| BtsCI | GGATG | 3 cut(s) | 243, 1396, 1624 |
| BtsI | GCAGTG | 1 cut(s) | 906 |
| BtsIMutI | CAGTG | 4 cut(s) | 247, 906, 1159, 1582 |
| BveI | ACCTGC | 1 cut(s) | 672 |
| Cac8I | GCNNGC | 4 cut(s) | 384, 751, 1200, 1314 |
| CfoI | GCGC | 1 cut(s) | 1660 |
| Cfr13I | GGNCC | 5 cut(s) | 170, 290, 1127, 1468, 1648 |
| ClaI | ATCGAT | 2 cut(s) | 1491, 1593 |
| CseI | GACGC | 1 cut(s) | 566 |
| Csp6I | GTAC | 2 cut(s) | 1294, 1339 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1362, 1397 |
| CviAII | CATG | 8 cut(s) | 188, 254, 279, 383, 1119, 1412, 1608, 1615 |
| CviQI | GTAC | 2 cut(s) | 1294, 1339 |
| DdeI | CTNAG | 5 cut(s) | 269, 358, 668, 742, 1278 |
| DpnI | GATC | 4 cut(s) | 402, 603, 1494, 1596 |
| DpnII | GATC | 4 cut(s) | 400, 601, 1492, 1594 |
| EaeI | YGGCCR | 1 cut(s) | 157 |
| Eam1104I | CTCTTC | 1 cut(s) | 1506 |
| EarI | CTCTTC | 1 cut(s) | 1506 |
| EciI | GGCGGA | 2 cut(s) | 673, 1662 |
| Eco130I | CCWWGG | 3 cut(s) | 278, 1411, 1651 |
| Eco32I | GATATC | 2 cut(s) | 214, 517 |
| Eco47I | GGWCC | 3 cut(s) | 170, 290, 1468 |
| Eco57I | CTGAAG | 1 cut(s) | 1487 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1468, 1648 |
| EcoRII | CCWGG | 2 cut(s) | 322, 1564 |
| EcoRV | GATATC | 2 cut(s) | 214, 517 |
| EcoT14I | CCWWGG | 3 cut(s) | 278, 1411, 1651 |
| EcoT22I | ATGCAT | 1 cut(s) | 1407 |
| ErhI | CCWWGG | 3 cut(s) | 278, 1411, 1651 |
| Esp3I | CGTCTC | 1 cut(s) | 549 |
| FaeI | CATG | 8 cut(s) | 191, 257, 282, 386, 1122, 1415, 1611, 1618 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 128, 160 |
| FaqI | GGGAC | 4 cut(s) | 382, 1150, 1384, 1505 |
| FatI | CATG | 8 cut(s) | 187, 253, 278, 382, 1118, 1411, 1607, 1614 |
| FauI | CCCGC | 2 cut(s) | 866, 1260 |
| FauNDI | CATATG | 1 cut(s) | 1602 |
| Fnu4HI | GCNGC | 1 cut(s) | 1149 |
| FokI | GGATG | 3 cut(s) | 230, 1383, 1631 |
| Fsp4HI | GCNGC | 1 cut(s) | 1149 |
| FspBI | CTAG | 2 cut(s) | 750, 1652 |
| GlaI | GCGC | 1 cut(s) | 1659 |
| GluI | GCNGC | 1 cut(s) | 1149 |
| GsaI | CCCAGC | 2 cut(s) | 882, 1128 |
| GsuI | CTGGAG | 2 cut(s) | 213, 1355 |
| HaeIII | GGCC | 3 cut(s) | 159, 1129, 1650 |
| HapII | CCGG | 4 cut(s) | 168, 597, 651, 795 |
| HgaI | GACGC | 1 cut(s) | 566 |
| HhaI | GCGC | 1 cut(s) | 1660 |
| Hin1II | CATG | 8 cut(s) | 191, 257, 282, 386, 1122, 1415, 1611, 1618 |
| Hin6I | GCGC | 1 cut(s) | 1658 |
| HinP1I | GCGC | 1 cut(s) | 1658 |
| HincII | GTYRAC | 5 cut(s) | 593, 1045, 1093, 1159, 1177 |
| HindII | GTYRAC | 5 cut(s) | 593, 1045, 1093, 1159, 1177 |
| HindIII | AAGCTT | 3 cut(s) | 72, 1018, 1200 |
| HinfI | GANTC | 6 cut(s) | 274, 370, 647, 1138, 1416, 1548 |
| HpaII | CCGG | 4 cut(s) | 168, 597, 651, 795 |
| HphI | GGTGA | 1 cut(s) | 1336 |
| Hpy188I | TCNGA | 7 cut(s) | 286, 361, 521, 671, 745, 1401, 1506 |
| Hpy188III | TCNNGA | 4 cut(s) | 145, 293, 1280, 1303 |
| Hpy99I | CGWCG | 1 cut(s) | 1309 |
| HpyAV | CCTTC | 4 cut(s) | 359, 436, 502, 978 |
| HpyCH4III | ACNGT | 9 cut(s) | 52, 126, 151, 290, 412, 419, 733, 1351, 1586 |
| HpyCH4IV | ACGT | 6 cut(s) | 176, 726, 867, 1047, 1428, 1478 |
| HpyCH4V | TGCA | 4 cut(s) | 691, 1198, 1405, 1582 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 860 |
| HpyF3I | CTNAG | 5 cut(s) | 269, 358, 668, 742, 1278 |
| HpySE526I | ACGT | 6 cut(s) | 176, 726, 867, 1047, 1428, 1478 |
| Hsp92II | CATG | 8 cut(s) | 191, 257, 282, 386, 1122, 1415, 1611, 1618 |
| HspAI | GCGC | 1 cut(s) | 1658 |
| Kzo9I | GATC | 4 cut(s) | 400, 601, 1492, 1594 |
| LmnI | GCTCC | 3 cut(s) | 326, 446, 1655 |
| LweI | GCATC | 5 cut(s) | 66, 736, 998, 1392, 1414 |
| MaeI | CTAG | 2 cut(s) | 750, 1652 |
| MaeII | ACGT | 6 cut(s) | 176, 726, 867, 1047, 1428, 1478 |
| MaeIII | GTNAC | 4 cut(s) | 233, 727, 781, 1621 |
| MalI | GATC | 4 cut(s) | 402, 603, 1494, 1596 |
| MboI | GATC | 4 cut(s) | 400, 601, 1492, 1594 |
| MboII | GAAGA | 6 cut(s) | 16, 52, 116, 524, 1339, 1493 |
| MluCI | AATT | 9 cut(s) | 12, 479, 931, 937, 1114, 1246, 1267, 1450, 1662 |
| MlyI | GAGTC | 2 cut(s) | 364, 1132 |
| MmeI | TCCRAC | 2 cut(s) | 343, 1514 |
| Mph1103I | ATGCAT | 1 cut(s) | 1407 |
| MroXI | GAANNNNTTC | 1 cut(s) | 540 |
| MseI | TTAA | 6 cut(s) | 11, 261, 633, 818, 936, 1266 |
| MslI | CAYNNNNRTG | 6 cut(s) | 95, 252, 1218, 1322, 1410, 1619 |
| MspI | CCGG | 4 cut(s) | 168, 597, 651, 795 |
| MspR9I | CCNGG | 5 cut(s) | 168, 324, 597, 795, 1566 |
| Mva1269I | GAATGC | 1 cut(s) | 1689 |
| MvaI | CCWGG | 2 cut(s) | 324, 1566 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 860 |
| NciI | CCSGG | 3 cut(s) | 168, 597, 795 |
| NcoI | CCATGG | 2 cut(s) | 278, 1411 |
| NdeI | CATATG | 1 cut(s) | 1602 |
| NdeII | GATC | 4 cut(s) | 400, 601, 1492, 1594 |
| NheI | GCTAGC | 1 cut(s) | 749 |
| NlaIII | CATG | 8 cut(s) | 191, 257, 282, 386, 1122, 1415, 1611, 1618 |
| NlaIV | GGNNCC | 4 cut(s) | 328, 448, 885, 1470 |
| NmuCI | GTSAC | 3 cut(s) | 727, 781, 1621 |
| NsiI | ATGCAT | 1 cut(s) | 1407 |
| NspI | RCATGY | 1 cut(s) | 386 |
| OliI | CACNNNNGTG | 2 cut(s) | 95, 1322 |
| PaeI | GCATGC | 1 cut(s) | 386 |
| PctI | GAATGC | 1 cut(s) | 1689 |
| PdmI | GAANNNNTTC | 1 cut(s) | 540 |
| PfeI | GAWTC | 4 cut(s) | 274, 647, 1416, 1548 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 249 |
| PfoI | TCCNGGA | 1 cut(s) | 166 |
| PkrI | GCNGC | 1 cut(s) | 1150 |
| Ple19I | CGATCG | 1 cut(s) | 1597 |
| PleI | GAGTC | 2 cut(s) | 364, 1132 |
| PpsI | GAGTC | 2 cut(s) | 364, 1132 |
| PpuMI | RGGWCCY | 1 cut(s) | 1468 |
| Psp1406I | AACGTT | 1 cut(s) | 176 |
| Psp5II | RGGWCCY | 1 cut(s) | 1468 |
| Psp6I | CCWGG | 2 cut(s) | 322, 1564 |
| PspFI | CCCAGC | 2 cut(s) | 878, 1124 |
| PspGI | CCWGG | 2 cut(s) | 322, 1564 |
| PspN4I | GGNNCC | 4 cut(s) | 328, 448, 885, 1470 |
| PspPI | GGNCC | 5 cut(s) | 170, 290, 1127, 1468, 1648 |
| PspPPI | RGGWCCY | 1 cut(s) | 1468 |
| PvuI | CGATCG | 1 cut(s) | 1597 |
| RsaI | GTAC | 2 cut(s) | 1295, 1340 |
| RsaNI | GTAC | 2 cut(s) | 1294, 1339 |
| RseI | CAYNNNNRTG | 6 cut(s) | 95, 252, 1218, 1322, 1410, 1619 |
| SaqAI | TTAA | 6 cut(s) | 11, 261, 633, 818, 936, 1266 |
| SatI | GCNGC | 1 cut(s) | 1149 |
| Sau3AI | GATC | 4 cut(s) | 400, 601, 1492, 1594 |
| Sau96I | GGNCC | 5 cut(s) | 170, 290, 1127, 1468, 1648 |
| SchI | GAGTC | 2 cut(s) | 364, 1132 |
| ScrFI | CCNGG | 5 cut(s) | 168, 324, 597, 795, 1566 |
| SfaNI | GCATC | 5 cut(s) | 66, 736, 998, 1392, 1414 |
| SfcI | CTRYAG | 1 cut(s) | 423 |
| SinI | GGWCC | 3 cut(s) | 170, 290, 1468 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 95, 252, 1218, 1322, 1410, 1619 |
| SphI | GCATGC | 1 cut(s) | 386 |
| Sse9I | AATT | 9 cut(s) | 12, 479, 931, 937, 1114, 1246, 1267, 1450, 1662 |
| SsiI | CCGC | 7 cut(s) | 549, 684, 873, 903, 1149, 1253, 1673 |
| SspI | AATATT | 1 cut(s) | 964 |
| SspMI | CTAG | 2 cut(s) | 750, 1652 |
| StyD4I | CCNGG | 5 cut(s) | 166, 322, 595, 793, 1564 |
| StyI | CCWWGG | 3 cut(s) | 278, 1411, 1651 |
| TaaI | ACNGT | 9 cut(s) | 52, 126, 151, 290, 412, 419, 733, 1351, 1586 |
| TaiI | ACGT | 6 cut(s) | 179, 729, 870, 1050, 1431, 1481 |
| TaqI | TCGA | 4 cut(s) | 393, 403, 1491, 1593 |
| TasI | AATT | 9 cut(s) | 12, 479, 931, 937, 1114, 1246, 1267, 1450, 1662 |
| TatI | WGTACW | 1 cut(s) | 1338 |
| TauI | GCSGC | 1 cut(s) | 1151 |
| TfiI | GAWTC | 4 cut(s) | 274, 647, 1416, 1548 |
| Tru1I | TTAA | 6 cut(s) | 11, 261, 633, 818, 936, 1266 |
| Tru9I | TTAA | 6 cut(s) | 11, 261, 633, 818, 936, 1266 |
| TscAI | CASTG | 4 cut(s) | 254, 913, 1159, 1589 |
| TseFI | GTSAC | 3 cut(s) | 727, 781, 1621 |
| Tsp45I | GTSAC | 3 cut(s) | 727, 781, 1621 |
| TspDTI | ATGAA | 6 cut(s) | 17, 176, 549, 930, 1107, 1618 |
| TspGWI | ACGGA | 3 cut(s) | 942, 1078, 1680 |
| TspRI | CASTG | 4 cut(s) | 254, 913, 1159, 1589 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 249 |
| VpaK11BI | GGWCC | 3 cut(s) | 170, 290, 1468 |
| XapI | RAATTY | 5 cut(s) | 479, 931, 1246, 1450, 1662 |
| XceI | RCATGY | 1 cut(s) | 386 |
| XmaJI | CCTAGG | 1 cut(s) | 1651 |
| XmnI | GAANNNNTTC | 1 cut(s) | 540 |
| XspI | CTAG | 2 cut(s) | 750, 1652 |
| Zsp2I | ATGCAT | 1 cut(s) | 1407 |