Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0000359

Physical Location & Seq

Genomic Coordinates Reverse (-)

5511109 .. 5512577

Gene Structure 1469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1042400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGAATAGCATTCTCTTCTTCTCAGTTGCTCAACATAACCTCACGGTGGTGGGAGTAGACGGGAGCTACACAAAGCCGGTGGCAAGAGATTACGTCACAATATCCCCAGGACAAACCATGGATGCCTTGTTGCTCACGAACCAACAAGTTGGTCAATATTACATGGCTGCTAGGGCTTACTCAAGCAGTCCTGTTATTGCCTTTGACAACACCACAACCACAGCAATATTACAATACAATGGTAACTCCACTCCGTTTTCAACTCCAGTATTCCCTTACCTTCCGTACTACAACGACACAAATTCGGCCTTCATTTTCTTTGATAGCCTTAGAAGCCTTGCTAATAAAGACCACCCAATTGATGTCCCATTAAACATCACCAGAAGAATACTCACCACAATTTCAGTCAACACATTGCCATGCCCCAACAATTCATGTGCAGGACCAAATGGCACCCGCCTATCCGCTAGCATGAACAATATAAGCTTTGTAACCCCCACAACAGTAGACATCCTAGAAGCCTACTACTATCACATTCATGGGGTCTACAAAAGGGGGTTCCCAAATTCTCCACCGCTGGTGTTTAATTTTACTGGTGAAACCCTACCATTCCTAGTACAGATACCAAAGAGAGCGACAAAGGTGAAAGTTATTAAATACGGAGCAAATGTGGAAATTGTTTTTCAAGGGACGATTGTGACTGCACCGATAGATCATCCAATGCATTTGCACGGGTATAGCTTCTTTATAGTAGGACGAGGGCCTGGGAACTTCGACGAAAGTCAGGACCCATTAAACTACAATCTCGTTGATCCTCCTATGAGGAACACTGCCACTGTGCCCATAAGTGGTTGGACTGTCATCAGATTCAGAGCTGACAATCCCGGAGTGTGGTTCATGCACTGCCATTTGGAGCGTCACTTAACCTGGGGAATGAACACCGTTCTCATTGTAAAGAACGGAAAACAGGAGGAAAAGTTGCTGCCACCGCCACCTAGAATGCCACCTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0010023 GO:0010035 GO:0010038 GO:0016491 GO:0016722 GO:0017144 GO:0018130 GO:0018958 GO:0019438 GO:0019748 GO:0042221 GO:0043167 GO:0043169 GO:0044237 GO:0044249 GO:0044550 GO:0046189 GO:0046483 GO:0046688 GO:0046872 GO:0046914 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

338

Amino Acids

37.55

Weight (kDa)

8.58

Isoelectric Point (pI)

41.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase	PF00394	2 - 82	1.4e-21	Multicopper oxidase
Cu-oxidase_2	PF07731	188 - 321	8.1e-42	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48100
fragaria_vesca	FvH4_1g24380 FvH4_2g05800 FvH4_5g30730
malus_domestica	MD01G1234900.v1.1 MD01G1235100.v1.1 MD01G1235200.v1.1 MD07G1307400.v1.1 MD07G1308000.v1.1 MD10G1042300.v1.1 MD10G1042400.v1.1 MD10G1042500.v1.1 MD10G1042700.v1.1
prunus_persica	Prupe.2G325200_v2.0.a1 Prupe.6G242000_v2.0.a1 Prupe.8G046800_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1
pyrus_communis	pycom01g24320 pycom01g24330 pycom07g28020 pycom10g02950 pycom17g03690
rosa_chinensis	RchiOBHm_Chr1g0384031 RchiOBHm_Chr2g0120941 RchiOBHm_Chr2g0120971 RchiOBHm_Chr2g0121051 RchiOBHm_Chr2g0121181 RchiOBHm_Chr2g0121211 RchiOBHm_Chr3g0473931 RchiOBHm_Chr3g0473941 RchiOBHm_Chr6g0257941 RchiOBHm_Chr6g0284781
rosa_laevigata	RLG00000008541 RLG00000014737 RLG00000018604 RLG00000018607 RLG00000018608 RLG00000018610 RLG00000018611 RLG00000018613 RLG00000023967 RLG00000023970 RLG00000026078 RLG00000035183
rosa_multiflora	Rmu_sc0000079.1_g000043 Rmu_sc0000079.1_g000062 Rmu_sc0000079.1_g000069 Rmu_sc0000621.1_g000019 Rmu_sc0000621.1_g000025 Rmu_sc0000621.1_g000041 Rmu_sc0000652.1_g000018 Rmu_sc0002414.1_g000030 Rmu_sc0002414.1_g000033 Rmu_sc0002843.1_g000016 Rmu_sc0005137.1_g000035 Rmu_sc0005139.1_g000021
rosa_roxburghii	Rroxscaffold_2G00122530 Rroxscaffold_2G00122570 Rroxscaffold_2G00122580 Rroxscaffold_2G00122650 Rroxscaffold_4G00277080 Rroxscaffold_6G00407610 Rroxscaffold_6G00407620 Rroxscaffold_7G00209050
rosa_rugosa	Rorug01G0444300 Rorug02G0232700 Rorug02G0232700 Rorug02G0232900 Rorug03G0137100 Rorug05G0565600 Rorug05G0566500
rosa_samantha	Rh1BG427300 Rh1CG440100 Rh2CG278100 Rh2CG278200 Rh2CG278700 Rh2CG278800 Rh2CG279100 Rh2DG314200 Rh2DG314300 Rh2DG314600 Rh3AG187200 Rh3DG211700 Rh3DG211800 Rh5AG356600 Rh6BG078000 Rh6BG078700 Rh6CG073300 Rh6DG070300 Rh6DG190200 Rh6DG274700 Rh7BG365900
rosa_wichuraiana	Rw0G018400 Rw1G040270 Rw2G023160 Rw2G023170 Rw2G023190 Rw2G023200 Rw2G023220 Rw2G023230 Rw3G017140 Rw3G017150 Rw4G012840 Rw6G007580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	452
AccI	GTMKAC	3 cut(s)	57, 507, 546
AciI	CCGC	4 cut(s)	457, 465, 575, 989
AclWI	GGATC	1 cut(s)	806
AcsI	RAATTY	2 cut(s)	301, 565
AfaI	GTAC	2 cut(s)	287, 618
AfiI	CCNNNNNNNGG	3 cut(s)	46, 848, 891
AgsI	TTSAA	2 cut(s)	261, 686
AjnI	CCWGG	3 cut(s)	106, 763, 926
AleI	CACNNNNGTG	1 cut(s)	47
AluBI	AGCT	4 cut(s)	66, 486, 741, 875
AluI	AGCT	4 cut(s)	66, 486, 741, 875
AlwI	GGATC	1 cut(s)	806
AoxI	GGCC	2 cut(s)	306, 761
ApeKI	GCWGC	2 cut(s)	167, 982
ApoI	RAATTY	2 cut(s)	301, 565
AspS9I	GGNCC	3 cut(s)	443, 761, 787
AsuC2I	CCSGG	1 cut(s)	885
AsuHPI	GGTGA	4 cut(s)	370, 385, 608, 655
AsuNHI	GCTAGC	1 cut(s)	467
AvaII	GGWCC	2 cut(s)	443, 787
BaeGI	GKGCMC	1 cut(s)	843
BanI	GGYRCC	1 cut(s)	452
BbvI	GCAGC	2 cut(s)	154, 969
BciT130I	CCWGG	3 cut(s)	108, 765, 928
BcnI	CCSGG	1 cut(s)	885
BfaI	CTAG	5 cut(s)	171, 468, 515, 614, 996
BisI	GCNGC	2 cut(s)	168, 983
BlsI	GCNGC	2 cut(s)	169, 984
Bme1390I	CCNGG	4 cut(s)	108, 765, 885, 928
Bme18I	GGWCC	2 cut(s)	443, 787
BmgT120I	GGNCC	3 cut(s)	443, 761, 787
BmiI	GGNNCC	3 cut(s)	454, 560, 789
BmrFI	CCNGG	4 cut(s)	108, 765, 885, 928
BmsI	GCATC	1 cut(s)	112
BmtI	GCTAGC	1 cut(s)	471
BoxI	GACNNNNGTC	1 cut(s)	780
BpmI	CTGGAG	1 cut(s)	249
BpuEI	CTTGAG	1 cut(s)	166
BpuMI	CCSGG	1 cut(s)	885
BsaJI	CCNNGG	4 cut(s)	106, 117, 764, 927
BsaXI	ACNNNNNCTCC	4 cut(s)	654, 684, 962, 992
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 848, 891
Bse118I	RCCGGY	1 cut(s)	76
Bse1I	ACTGG	2 cut(s)	266, 598
Bse3DI	GCAATG	1 cut(s)	413
BseBI	CCWGG	3 cut(s)	108, 765, 928
BseDI	CCNNGG	4 cut(s)	106, 117, 764, 927
BseGI	GGATG	3 cut(s)	127, 510, 715
BseLI	CCNNNNNNNGG	3 cut(s)	46, 848, 891
BseMI	GCAATG	1 cut(s)	413
BseMII	CTCAG	1 cut(s)	36
BseNI	ACTGG	2 cut(s)	266, 598
BseSI	GKGCMC	1 cut(s)	843
BseXI	GCAGC	2 cut(s)	154, 969
BsgI	GTGCAG	2 cut(s)	459, 687
BshFI	GGCC	2 cut(s)	308, 763
BshNI	GGYRCC	1 cut(s)	452
BsiSI	CCGG	2 cut(s)	77, 885
BslFI	GGGAC	2 cut(s)	350, 703
BslI	CCNNNNNNNGG	3 cut(s)	46, 848, 891
BsmFI	GGGAC	2 cut(s)	350, 703
BsmI	GAATGC	2 cut(s)	9, 1005
BsnI	GGCC	2 cut(s)	308, 763
Bsp1286I	GDGCHC	1 cut(s)	843
Bsp143I	GATC	2 cut(s)	712, 811
Bsp19I	CCATGG	1 cut(s)	117
BspACI	CCGC	4 cut(s)	457, 465, 575, 989
BspANI	GGCC	2 cut(s)	308, 763
BspCNI	CTCAG	1 cut(s)	35
BspLI	GGNNCC	3 cut(s)	454, 560, 789
BspOI	GCTAGC	1 cut(s)	471
BspPI	GGATC	1 cut(s)	806
BspT107I	GGYRCC	1 cut(s)	452
BsrDI	GCAATG	1 cut(s)	413
BsrFI	RCCGGY	1 cut(s)	76
BsrI	ACTGG	2 cut(s)	266, 598
BssAI	RCCGGY	1 cut(s)	76
BssECI	CCNNGG	4 cut(s)	106, 117, 764, 927
BssMI	GATC	2 cut(s)	712, 811
BssT1I	CCWWGG	1 cut(s)	117
Bst2UI	CCWGG	3 cut(s)	108, 765, 928
Bst4CI	ACNGT	5 cut(s)	46, 505, 838, 859, 943
Bst6I	CTCTTC	1 cut(s)	20
BstC8I	GCNNGC	1 cut(s)	469
BstDEI	CTNAG	2 cut(s)	22, 329
BstDSI	CCRYGG	1 cut(s)	117
BstF5I	GGATG	3 cut(s)	127, 510, 715
BstKTI	GATC	2 cut(s)	715, 814
BstMBI	GATC	2 cut(s)	712, 811
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 333, 988
BstNI	CCWGG	3 cut(s)	108, 765, 928
BstPAI	GACNNNNGTC	1 cut(s)	780
BstSCI	CCNGG	4 cut(s)	106, 763, 883, 926
BstSLI	GKGCMC	1 cut(s)	843
BstV1I	GCAGC	2 cut(s)	154, 969
BstXI	CCANNNNNNTGG	1 cut(s)	149
BsuRI	GGCC	2 cut(s)	308, 763
BtgI	CCRYGG	1 cut(s)	117
BtsCI	GGATG	3 cut(s)	127, 510, 715
BtsI	GCAGTG	2 cut(s)	828, 901
BtsIMutI	CAGTG	3 cut(s)	828, 834, 901
Cac8I	GCNNGC	1 cut(s)	469
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	3 cut(s)	443, 761, 787
CseI	GACGC	1 cut(s)	905
Csp6I	GTAC	2 cut(s)	286, 617
CspCI	CAANNNNNGTGG	2 cut(s)	60, 95
CviAII	CATG	7 cut(s)	118, 163, 420, 435, 472, 539, 898
CviQI	GTAC	2 cut(s)	286, 617
DdeI	CTNAG	2 cut(s)	22, 329
DpnI	GATC	2 cut(s)	714, 813
DpnII	GATC	2 cut(s)	712, 811
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	117
Eco47I	GGWCC	2 cut(s)	443, 787
EcoO109I	RGGNCCY	2 cut(s)	761, 787
EcoRII	CCWGG	3 cut(s)	106, 763, 926
EcoT14I	CCWWGG	1 cut(s)	117
EcoT22I	ATGCAT	1 cut(s)	726
ErhI	CCWWGG	1 cut(s)	117
FaeI	CATG	7 cut(s)	121, 166, 423, 438, 475, 542, 901
FaqI	GGGAC	2 cut(s)	350, 703
FatI	CATG	7 cut(s)	117, 162, 419, 434, 471, 538, 897
FauI	CCCGC	1 cut(s)	464
FblI	GTMKAC	3 cut(s)	57, 507, 546
Fnu4HI	GCNGC	2 cut(s)	168, 983
FokI	GGATG	3 cut(s)	134, 497, 702
Fsp4HI	GCNGC	2 cut(s)	168, 983
FspBI	CTAG	5 cut(s)	171, 468, 515, 614, 996
GluI	GCNGC	2 cut(s)	168, 983
GsuI	CTGGAG	1 cut(s)	249
HaeIII	GGCC	2 cut(s)	308, 763
HapII	CCGG	2 cut(s)	77, 885
HgaI	GACGC	1 cut(s)	905
Hin1II	CATG	7 cut(s)	121, 166, 423, 438, 475, 542, 901
HincII	GTYRAC	1 cut(s)	409
HindII	GTYRAC	1 cut(s)	409
HindIII	AAGCTT	1 cut(s)	484
HinfI	GANTC	1 cut(s)	867
HpaII	CCGG	2 cut(s)	77, 885
HphI	GGTGA	4 cut(s)	370, 385, 608, 655
Hpy166II	GTNNAC	4 cut(s)	58, 409, 508, 547
Hpy188I	TCNGA	2 cut(s)	866, 872
Hpy188III	TCNNGA	2 cut(s)	136, 785
Hpy8I	GTNNAC	4 cut(s)	58, 409, 508, 547
Hpy99I	CGWCG	1 cut(s)	779
HpyAV	CCTTC	2 cut(s)	290, 319
HpyCH4III	ACNGT	5 cut(s)	46, 505, 838, 859, 943
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	5 cut(s)	440, 704, 724, 730, 901
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 333, 988
HpyF3I	CTNAG	2 cut(s)	22, 329
HpySE526I	ACGT	1 cut(s)	93
Hsp92II	CATG	7 cut(s)	121, 166, 423, 438, 475, 542, 901
Kzo9I	GATC	2 cut(s)	712, 811
LmnI	GCTCC	3 cut(s)	63, 662, 913
Lsp1109I	GCAGC	2 cut(s)	154, 969
LweI	GCATC	1 cut(s)	112
MaeI	CTAG	5 cut(s)	171, 468, 515, 614, 996
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	5 cut(s)	94, 242, 490, 697, 917
MalI	GATC	2 cut(s)	714, 813
MboI	GATC	2 cut(s)	712, 811
MboII	GAAGA	3 cut(s)	7, 10, 396
MfeI	CAATTG	1 cut(s)	357
MhlI	GDGCHC	1 cut(s)	843
MluCI	AATT	7 cut(s)	301, 357, 399, 430, 565, 586, 675
MmeI	TCCRAC	1 cut(s)	833
MnlI	CCTC	5 cut(s)	50, 752, 816, 825, 964
Mph1103I	ATGCAT	1 cut(s)	726
MseI	TTAA	6 cut(s)	371, 585, 654, 794, 923, 1012
MslI	CAYNNNNRTG	3 cut(s)	47, 418, 537
MspA1I	CMGCKG	1 cut(s)	577
MspI	CCGG	2 cut(s)	77, 885
MspR9I	CCNGG	4 cut(s)	108, 765, 885, 928
MunI	CAATTG	1 cut(s)	357
Mva1269I	GAATGC	2 cut(s)	9, 1005
MvaI	CCWGG	3 cut(s)	108, 765, 928
MwoI	GCNNNNNNNGC	3 cut(s)	173, 333, 988
NciI	CCSGG	1 cut(s)	885
NcoI	CCATGG	1 cut(s)	117
NdeII	GATC	2 cut(s)	712, 811
NheI	GCTAGC	1 cut(s)	467
NlaIII	CATG	7 cut(s)	121, 166, 423, 438, 475, 542, 901
NlaIV	GGNNCC	3 cut(s)	454, 560, 789
NmuCI	GTSAC	3 cut(s)	94, 697, 917
NsiI	ATGCAT	1 cut(s)	726
OliI	CACNNNNGTG	1 cut(s)	47
PctI	GAATGC	2 cut(s)	9, 1005
PfeI	GAWTC	1 cut(s)	867
PfoI	TCCNGGA	1 cut(s)	883
PkrI	GCNGC	2 cut(s)	169, 984
PpuMI	RGGWCCY	1 cut(s)	787
PshAI	GACNNNNGTC	1 cut(s)	780
Psp5II	RGGWCCY	1 cut(s)	787
Psp6I	CCWGG	3 cut(s)	106, 763, 926
PspGI	CCWGG	3 cut(s)	106, 763, 926
PspN4I	GGNNCC	3 cut(s)	454, 560, 789
PspPI	GGNCC	3 cut(s)	443, 761, 787
PspPPI	RGGWCCY	1 cut(s)	787
RsaI	GTAC	2 cut(s)	287, 618
RsaNI	GTAC	2 cut(s)	286, 617
RseI	CAYNNNNRTG	3 cut(s)	47, 418, 537
SaqAI	TTAA	6 cut(s)	371, 585, 654, 794, 923, 1012
SatI	GCNGC	2 cut(s)	168, 983
Sau3AI	GATC	2 cut(s)	712, 811
Sau96I	GGNCC	3 cut(s)	443, 761, 787
ScrFI	CCNGG	4 cut(s)	108, 765, 885, 928
SduI	GDGCHC	1 cut(s)	843
SfaNI	GCATC	1 cut(s)	112
SinI	GGWCC	2 cut(s)	443, 787
SmiMI	CAYNNNNRTG	3 cut(s)	47, 418, 537
SmlI	CTYRAG	1 cut(s)	181
SmoI	CTYRAG	1 cut(s)	181
Sse9I	AATT	7 cut(s)	301, 357, 399, 430, 565, 586, 675
SsiI	CCGC	4 cut(s)	457, 465, 575, 989
SspI	AATATT	2 cut(s)	158, 228
SspMI	CTAG	5 cut(s)	171, 468, 515, 614, 996
StyD4I	CCNGG	4 cut(s)	106, 763, 883, 926
StyI	CCWWGG	1 cut(s)	117
TaaI	ACNGT	5 cut(s)	46, 505, 838, 859, 943
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	1 cut(s)	774
TasI	AATT	7 cut(s)	301, 357, 399, 430, 565, 586, 675
TatI	WGTACW	1 cut(s)	616
TfiI	GAWTC	1 cut(s)	867
Tru1I	TTAA	6 cut(s)	371, 585, 654, 794, 923, 1012
Tru9I	TTAA	6 cut(s)	371, 585, 654, 794, 923, 1012
TscAI	CASTG	3 cut(s)	835, 841, 908
TseFI	GTSAC	3 cut(s)	94, 697, 917
TseI	GCWGC	2 cut(s)	167, 982
Tsp45I	GTSAC	3 cut(s)	94, 697, 917
TspDTI	ATGAA	7 cut(s)	17, 301, 423, 488, 527, 886, 950
TspGWI	ACGGA	4 cut(s)	243, 273, 675, 975
TspRI	CASTG	3 cut(s)	835, 841, 908
VpaK11BI	GGWCC	2 cut(s)	443, 787
XapI	RAATTY	2 cut(s)	301, 565
XmiI	GTMKAC	3 cut(s)	57, 507, 546
XspI	CTAG	5 cut(s)	171, 468, 515, 614, 996
Zsp2I	ATGCAT	1 cut(s)	726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.