Lignin degradation and detoxification of lignin-derived products
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 309 |
| AccI | GTMKAC | 1 cut(s) | 107 |
| AciI | CCGC | 5 cut(s) | 609, 744, 933, 1313, 1733 |
| AclI | AACGTT | 1 cut(s) | 236 |
| AclWI | GGATC | 3 cut(s) | 468, 1547, 1662 |
| AcoI | YGGCCR | 1 cut(s) | 856 |
| AcsI | RAATTY | 5 cut(s) | 539, 991, 1306, 1435, 1510 |
| AcuI | CTGAAG | 1 cut(s) | 1547 |
| AcyI | GRCGYC | 1 cut(s) | 1364 |
| AfaI | GTAC | 2 cut(s) | 1355, 1400 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 309, 502, 503, 1373, 1589, 1739 |
| AflIII | ACRYGT | 1 cut(s) | 1199 |
| AgsI | TTSAA | 6 cut(s) | 380, 605, 630, 694, 831, 1612 |
| AjiI | CACGTC | 1 cut(s) | 1108 |
| AjnI | CCWGG | 4 cut(s) | 226, 382, 389, 1624 |
| AleI | CACNNNNGTG | 1 cut(s) | 155 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1670, 1702 |
| AluBI | AGCT | 8 cut(s) | 38, 697, 813, 1080, 1208, 1230, 1262, 1337 |
| AluI | AGCT | 8 cut(s) | 38, 697, 813, 1080, 1208, 1230, 1262, 1337 |
| AlwI | GGATC | 3 cut(s) | 468, 1547, 1662 |
| AoxI | GGCC | 4 cut(s) | 229, 856, 1187, 1708 |
| ApeKI | GCWGC | 1 cut(s) | 914 |
| ApoI | RAATTY | 5 cut(s) | 539, 991, 1306, 1435, 1510 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 600 |
| AspLEI | GCGC | 1 cut(s) | 1720 |
| AspS9I | GGNCC | 6 cut(s) | 230, 350, 616, 1187, 1528, 1708 |
| AsuC2I | CCSGG | 2 cut(s) | 657, 855 |
| AsuHPI | GGTGA | 2 cut(s) | 40, 1396 |
| AsuNHI | GCTAGC | 1 cut(s) | 809 |
| AvaII | GGWCC | 3 cut(s) | 350, 616, 1528 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1382, 1415 |
| BbvI | GCAGC | 1 cut(s) | 901 |
| BccI | CCATC | 5 cut(s) | 311, 1157, 1464, 1491, 1580 |
| BceAI | ACGGC | 3 cut(s) | 727, 731, 1300 |
| BciT130I | CCWGG | 4 cut(s) | 228, 384, 391, 1626 |
| BcnI | CCSGG | 2 cut(s) | 657, 855 |
| BfaI | CTAG | 1 cut(s) | 810 |
| BfmI | CTRYAG | 2 cut(s) | 483, 1358 |
| BisI | GCNGC | 1 cut(s) | 915 |
| BlsI | GCNGC | 1 cut(s) | 916 |
| Bme1390I | CCNGG | 6 cut(s) | 228, 384, 391, 657, 855, 1626 |
| Bme18I | GGWCC | 3 cut(s) | 350, 616, 1528 |
| BmgBI | CACGTC | 1 cut(s) | 1108 |
| BmgT120I | GGNCC | 6 cut(s) | 230, 350, 616, 1187, 1528, 1708 |
| BmiI | GGNNCC | 6 cut(s) | 88, 388, 508, 617, 618, 1530 |
| BmrFI | CCNGG | 6 cut(s) | 228, 384, 391, 657, 855, 1626 |
| BmsI | GCATC | 6 cut(s) | 34, 126, 796, 1058, 1452, 1474 |
| BmtI | GCTAGC | 1 cut(s) | 813 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1663 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1388, 1420 |
| BpmI | CTGGAG | 1 cut(s) | 1415 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1338 |
| BpuMI | CCSGG | 2 cut(s) | 657, 855 |
| BsaAI | YACGTR | 1 cut(s) | 77 |
| BsaBI | GATNNNNATC | 2 cut(s) | 666, 1455 |
| BsaHI | GRCGYC | 1 cut(s) | 1364 |
| BsaJI | CCNNGG | 5 cut(s) | 329, 338, 475, 985, 1471 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 246, 276, 835, 865, 1406, 1436 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 309, 502, 503, 1373, 1589, 1739 |
| Bse1I | ACTGG | 5 cut(s) | 51, 314, 1065, 1212, 1398 |
| Bse3DI | GCAATG | 3 cut(s) | 374, 771, 909 |
| Bse8I | GATNNNNATC | 2 cut(s) | 666, 1455 |
| BseBI | CCWGG | 4 cut(s) | 228, 384, 391, 1626 |
| BseDI | CCNNGG | 5 cut(s) | 329, 338, 475, 985, 1471 |
| BseGI | GGATG | 6 cut(s) | 25, 277, 303, 1001, 1456, 1502 |
| BseJI | GATNNNNATC | 2 cut(s) | 666, 1455 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 309, 502, 503, 1373, 1589, 1739 |
| BseMI | GCAATG | 3 cut(s) | 374, 771, 909 |
| BseMII | CTCAG | 4 cut(s) | 432, 742, 816, 1352 |
| BseNI | ACTGG | 5 cut(s) | 51, 314, 1065, 1212, 1398 |
| BseRI | GAGGAG | 2 cut(s) | 132, 1548 |
| BseXI | GCAGC | 1 cut(s) | 901 |
| BseYI | CCCAGC | 2 cut(s) | 938, 1184 |
| BshFI | GGCC | 4 cut(s) | 231, 858, 1189, 1710 |
| BsiSI | CCGG | 3 cut(s) | 252, 657, 855 |
| BslFI | GGGAC | 5 cut(s) | 442, 629, 1390, 1444, 1565 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 309, 502, 503, 1373, 1589, 1739 |
| BsmFI | GGGAC | 5 cut(s) | 442, 629, 1390, 1444, 1565 |
| BsmI | GAATGC | 1 cut(s) | 1749 |
| BsnI | GGCC | 4 cut(s) | 231, 858, 1189, 1710 |
| Bsp143I | GATC | 4 cut(s) | 460, 661, 1552, 1654 |
| Bsp19I | CCATGG | 3 cut(s) | 338, 985, 1471 |
| BspACI | CCGC | 5 cut(s) | 609, 744, 933, 1313, 1733 |
| BspANI | GGCC | 4 cut(s) | 231, 858, 1189, 1710 |
| BspCNI | CTCAG | 4 cut(s) | 431, 741, 815, 1351 |
| BspLI | GGNNCC | 6 cut(s) | 88, 388, 508, 617, 618, 1530 |
| BspOI | GCTAGC | 1 cut(s) | 813 |
| BspPI | GGATC | 3 cut(s) | 468, 1547, 1662 |
| BsrDI | GCAATG | 3 cut(s) | 374, 771, 909 |
| BsrI | ACTGG | 5 cut(s) | 51, 314, 1065, 1212, 1398 |
| BssECI | CCNNGG | 5 cut(s) | 329, 338, 475, 985, 1471 |
| BssMI | GATC | 4 cut(s) | 460, 661, 1552, 1654 |
| BssNI | GRCGYC | 1 cut(s) | 1364 |
| BssT1I | CCWWGG | 3 cut(s) | 338, 985, 1471 |
| Bst2UI | CCWGG | 4 cut(s) | 228, 384, 391, 1626 |
| Bst6I | CTCTTC | 1 cut(s) | 1566 |
| BstACI | GRCGYC | 1 cut(s) | 1364 |
| BstBAI | YACGTR | 1 cut(s) | 77 |
| BstC8I | GCNNGC | 3 cut(s) | 444, 811, 1260 |
| BstDEI | CTNAG | 5 cut(s) | 16, 418, 728, 802, 1338 |
| BstDSI | CCRYGG | 4 cut(s) | 338, 475, 985, 1471 |
| BstF5I | GGATG | 6 cut(s) | 25, 277, 303, 1001, 1456, 1502 |
| BstHHI | GCGC | 1 cut(s) | 1720 |
| BstKTI | GATC | 4 cut(s) | 463, 664, 1555, 1657 |
| BstMBI | GATC | 4 cut(s) | 460, 661, 1552, 1654 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 93, 920, 944, 1236 |
| BstNI | CCWGG | 4 cut(s) | 228, 384, 391, 1626 |
| BstNSI | RCATGY | 1 cut(s) | 446 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1663 |
| BstSCI | CCNGG | 6 cut(s) | 226, 382, 389, 655, 853, 1624 |
| BstSFI | CTRYAG | 2 cut(s) | 483, 1358 |
| BstSNI | TACGTA | 1 cut(s) | 77 |
| BstV1I | GCAGC | 1 cut(s) | 901 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 314, 1280 |
| BsuRI | GGCC | 4 cut(s) | 231, 858, 1189, 1710 |
| BtgI | CCRYGG | 4 cut(s) | 338, 475, 985, 1471 |
| BtgZI | GCGATG | 1 cut(s) | 1558 |
| BtrI | CACGTC | 1 cut(s) | 1108 |
| BtsCI | GGATG | 6 cut(s) | 25, 277, 303, 1001, 1456, 1502 |
| BtsI | GCAGTG | 1 cut(s) | 966 |
| BtsIMutI | CAGTG | 4 cut(s) | 29, 307, 966, 1642 |
| Cac8I | GCNNGC | 3 cut(s) | 444, 811, 1260 |
| CfoI | GCGC | 1 cut(s) | 1720 |
| Cfr13I | GGNCC | 6 cut(s) | 230, 350, 616, 1187, 1528, 1708 |
| CseI | GACGC | 3 cut(s) | 123, 775, 1372 |
| Csp6I | GTAC | 2 cut(s) | 1354, 1399 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1422, 1457 |
| CviQI | GTAC | 2 cut(s) | 1354, 1399 |
| DdeI | CTNAG | 5 cut(s) | 16, 418, 728, 802, 1338 |
| DpnI | GATC | 4 cut(s) | 462, 663, 1554, 1656 |
| DpnII | GATC | 4 cut(s) | 460, 661, 1552, 1654 |
| EaeI | YGGCCR | 1 cut(s) | 856 |
| Eam1104I | CTCTTC | 1 cut(s) | 1566 |
| EarI | CTCTTC | 1 cut(s) | 1566 |
| EciI | GGCGGA | 2 cut(s) | 733, 1722 |
| Eco105I | TACGTA | 1 cut(s) | 77 |
| Eco130I | CCWWGG | 3 cut(s) | 338, 985, 1471 |
| Eco32I | GATATC | 1 cut(s) | 577 |
| Eco47I | GGWCC | 3 cut(s) | 350, 616, 1528 |
| Eco57I | CTGAAG | 1 cut(s) | 1547 |
| EcoO109I | RGGNCCY | 3 cut(s) | 616, 1528, 1708 |
| EcoRII | CCWGG | 4 cut(s) | 226, 382, 389, 1624 |
| EcoRV | GATATC | 1 cut(s) | 577 |
| EcoT14I | CCWWGG | 3 cut(s) | 338, 985, 1471 |
| EcoT22I | ATGCAT | 1 cut(s) | 1467 |
| ErhI | CCWWGG | 3 cut(s) | 338, 985, 1471 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 188, 220 |
| FaqI | GGGAC | 5 cut(s) | 442, 629, 1390, 1444, 1565 |
| FauI | CCCGC | 2 cut(s) | 926, 1320 |
| FauNDI | CATATG | 1 cut(s) | 1662 |
| FblI | GTMKAC | 1 cut(s) | 107 |
| Fnu4HI | GCNGC | 1 cut(s) | 915 |
| FokI | GGATG | 6 cut(s) | 12, 284, 290, 988, 1443, 1509 |
| Fsp4HI | GCNGC | 1 cut(s) | 915 |
| FspBI | CTAG | 1 cut(s) | 810 |
| GlaI | GCGC | 1 cut(s) | 1719 |
| GluI | GCNGC | 1 cut(s) | 915 |
| GsaI | CCCAGC | 2 cut(s) | 942, 1188 |
| GsuI | CTGGAG | 1 cut(s) | 1415 |
| HaeIII | GGCC | 4 cut(s) | 231, 858, 1189, 1710 |
| HapII | CCGG | 3 cut(s) | 252, 657, 855 |
| HgaI | GACGC | 3 cut(s) | 123, 775, 1372 |
| HhaI | GCGC | 1 cut(s) | 1720 |
| Hin1I | GRCGYC | 1 cut(s) | 1364 |
| Hin6I | GCGC | 1 cut(s) | 1718 |
| HinP1I | GCGC | 1 cut(s) | 1718 |
| HincII | GTYRAC | 1 cut(s) | 653 |
| HindII | GTYRAC | 1 cut(s) | 653 |
| HindIII | AAGCTT | 2 cut(s) | 1078, 1260 |
| HinfI | GANTC | 6 cut(s) | 61, 334, 430, 601, 1476, 1608 |
| HpaII | CCGG | 3 cut(s) | 252, 657, 855 |
| HphI | GGTGA | 2 cut(s) | 40, 1396 |
| Hpy166II | GTNNAC | 7 cut(s) | 108, 214, 396, 475, 653, 1057, 1070 |
| Hpy188I | TCNGA | 7 cut(s) | 346, 421, 581, 731, 805, 1461, 1566 |
| Hpy188III | TCNNGA | 4 cut(s) | 205, 353, 1340, 1652 |
| Hpy8I | GTNNAC | 7 cut(s) | 108, 214, 396, 475, 653, 1057, 1070 |
| Hpy99I | CGWCG | 1 cut(s) | 139 |
| HpyAV | CCTTC | 3 cut(s) | 419, 496, 1038 |
| HpyCH4IV | ACGT | 8 cut(s) | 76, 236, 927, 1107, 1201, 1488, 1538, 1685 |
| HpyCH4V | TGCA | 5 cut(s) | 751, 917, 1258, 1465, 1642 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 93, 920, 944, 1236 |
| HpyF3I | CTNAG | 5 cut(s) | 16, 418, 728, 802, 1338 |
| HpySE526I | ACGT | 8 cut(s) | 76, 236, 927, 1107, 1201, 1488, 1538, 1685 |
| Hsp92I | GRCGYC | 1 cut(s) | 1364 |
| HspAI | GCGC | 1 cut(s) | 1718 |
| KflI | GGGWCCC | 1 cut(s) | 616 |
| Kzo9I | GATC | 4 cut(s) | 460, 661, 1552, 1654 |
| LmnI | GCTCC | 3 cut(s) | 92, 386, 506 |
| Lsp1109I | GCAGC | 1 cut(s) | 901 |
| LweI | GCATC | 6 cut(s) | 34, 126, 796, 1058, 1452, 1474 |
| MaeI | CTAG | 1 cut(s) | 810 |
| MaeII | ACGT | 8 cut(s) | 76, 236, 927, 1107, 1201, 1488, 1538, 1685 |
| MaeIII | GTNAC | 5 cut(s) | 40, 146, 293, 787, 841 |
| MalI | GATC | 4 cut(s) | 462, 663, 1554, 1656 |
| MboI | GATC | 4 cut(s) | 460, 661, 1552, 1654 |
| MboII | GAAGA | 5 cut(s) | 112, 176, 584, 1399, 1553 |
| MlyI | GAGTC | 1 cut(s) | 424 |
| MmeI | TCCRAC | 2 cut(s) | 324, 1574 |
| Mph1103I | ATGCAT | 1 cut(s) | 1467 |
| MroXI | GAANNNNTTC | 1 cut(s) | 600 |
| MseI | TTAA | 3 cut(s) | 321, 878, 1326 |
| MslI | CAYNNNNRTG | 6 cut(s) | 155, 312, 1106, 1278, 1470, 1679 |
| MspI | CCGG | 3 cut(s) | 252, 657, 855 |
| MspR9I | CCNGG | 6 cut(s) | 228, 384, 391, 657, 855, 1626 |
| Mva1269I | GAATGC | 1 cut(s) | 1749 |
| MvaI | CCWGG | 4 cut(s) | 228, 384, 391, 1626 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 93, 920, 944, 1236 |
| NciI | CCSGG | 2 cut(s) | 657, 855 |
| NcoI | CCATGG | 3 cut(s) | 338, 985, 1471 |
| NdeI | CATATG | 1 cut(s) | 1662 |
| NdeII | GATC | 4 cut(s) | 460, 661, 1552, 1654 |
| NheI | GCTAGC | 1 cut(s) | 809 |
| NlaIV | GGNNCC | 6 cut(s) | 88, 388, 508, 617, 618, 1530 |
| NmuCI | GTSAC | 2 cut(s) | 787, 841 |
| NsiI | ATGCAT | 1 cut(s) | 1467 |
| NspI | RCATGY | 1 cut(s) | 446 |
| OliI | CACNNNNGTG | 1 cut(s) | 155 |
| PaeI | GCATGC | 1 cut(s) | 446 |
| PctI | GAATGC | 1 cut(s) | 1749 |
| PdmI | GAANNNNTTC | 1 cut(s) | 600 |
| PfeI | GAWTC | 5 cut(s) | 61, 334, 601, 1476, 1608 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 309 |
| PkrI | GCNGC | 1 cut(s) | 916 |
| PleI | GAGTC | 1 cut(s) | 424 |
| PpsI | GAGTC | 1 cut(s) | 424 |
| Ppu21I | YACGTR | 1 cut(s) | 77 |
| PpuMI | RGGWCCY | 2 cut(s) | 616, 1528 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1663 |
| Psp1406I | AACGTT | 1 cut(s) | 236 |
| Psp5II | RGGWCCY | 2 cut(s) | 616, 1528 |
| Psp6I | CCWGG | 4 cut(s) | 226, 382, 389, 1624 |
| PspFI | CCCAGC | 2 cut(s) | 938, 1184 |
| PspGI | CCWGG | 4 cut(s) | 226, 382, 389, 1624 |
| PspN4I | GGNNCC | 6 cut(s) | 88, 388, 508, 617, 618, 1530 |
| PspPI | GGNCC | 6 cut(s) | 230, 350, 616, 1187, 1528, 1708 |
| PspPPI | RGGWCCY | 2 cut(s) | 616, 1528 |
| PsrI | GAACNNNNNNTAC | 1 cut(s) | 28 |
| RsaI | GTAC | 2 cut(s) | 1355, 1400 |
| RsaNI | GTAC | 2 cut(s) | 1354, 1399 |
| RseI | CAYNNNNRTG | 6 cut(s) | 155, 312, 1106, 1278, 1470, 1679 |
| SaqAI | TTAA | 3 cut(s) | 321, 878, 1326 |
| SatI | GCNGC | 1 cut(s) | 915 |
| Sau3AI | GATC | 4 cut(s) | 460, 661, 1552, 1654 |
| Sau96I | GGNCC | 6 cut(s) | 230, 350, 616, 1187, 1528, 1708 |
| SchI | GAGTC | 1 cut(s) | 424 |
| ScrFI | CCNGG | 6 cut(s) | 228, 384, 391, 657, 855, 1626 |
| SfaNI | GCATC | 6 cut(s) | 34, 126, 796, 1058, 1452, 1474 |
| SfcI | CTRYAG | 2 cut(s) | 483, 1358 |
| SinI | GGWCC | 3 cut(s) | 350, 616, 1528 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 155, 312, 1106, 1278, 1470, 1679 |
| SnaBI | TACGTA | 1 cut(s) | 77 |
| SphI | GCATGC | 1 cut(s) | 446 |
| SsiI | CCGC | 5 cut(s) | 609, 744, 933, 1313, 1733 |
| SspI | AATATT | 1 cut(s) | 1024 |
| SspMI | CTAG | 1 cut(s) | 810 |
| StyD4I | CCNGG | 6 cut(s) | 226, 382, 389, 655, 853, 1624 |
| StyI | CCWWGG | 3 cut(s) | 338, 985, 1471 |
| TaiI | ACGT | 8 cut(s) | 79, 239, 930, 1110, 1204, 1491, 1541, 1688 |
| TaqI | TCGA | 4 cut(s) | 70, 463, 1551, 1657 |
| TatI | WGTACW | 1 cut(s) | 1398 |
| TfiI | GAWTC | 5 cut(s) | 61, 334, 601, 1476, 1608 |
| Tru1I | TTAA | 3 cut(s) | 321, 878, 1326 |
| Tru9I | TTAA | 3 cut(s) | 321, 878, 1326 |
| TscAI | CASTG | 4 cut(s) | 36, 314, 973, 1649 |
| TseFI | GTSAC | 2 cut(s) | 787, 841 |
| TseI | GCWGC | 1 cut(s) | 914 |
| Tsp45I | GTSAC | 2 cut(s) | 787, 841 |
| TspDTI | ATGAA | 6 cut(s) | 17, 53, 609, 990, 1167, 1678 |
| TspGWI | ACGGA | 2 cut(s) | 113, 1394 |
| TspRI | CASTG | 4 cut(s) | 36, 314, 973, 1649 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 309 |
| VpaK11BI | GGWCC | 3 cut(s) | 350, 616, 1528 |
| XapI | RAATTY | 5 cut(s) | 539, 991, 1306, 1435, 1510 |
| XceI | RCATGY | 1 cut(s) | 446 |
| XmiI | GTMKAC | 1 cut(s) | 107 |
| XmnI | GAANNNNTTC | 1 cut(s) | 600 |
| XspI | CTAG | 1 cut(s) | 810 |
| Zsp2I | ATGCAT | 1 cut(s) | 1467 |