Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0000359

Physical Location & Seq

Genomic Coordinates Reverse (-)

36348300 .. 36351154

Gene Structure 2855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1307400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1695 bp

ATGAATATTTTAACTAGCTTGCAACTTGCAGTCGGCTTGCTATTGTCTACTGTTGGCATCTTCCATTGCCAAGCTTTGTCTCCTCGGTACACTTTTGTGGTCGAAGAAACTTCATACAAACGACTGTGTAGCACAAAGAATATCTTGACTGTAAACGGCCAGTTTCCGGGACCAACATTGTATGCTCGTGCTGGAGATACTGTCATAGTGGATGTCTATAACAAGGGCAATCGTAACATTACCCTCCATTGGCATGGAGTTAAGCAACCGAGGAACCCATGGTCGGACGGTCCTGATTACATCACGCAATGTCCTATTCAACCAGGAGCTAGGTTTACCCAAACCATTATATTTTCCTCAGAGGAAGGGACCCTATGGTGGCATGCTCACAGTGAGTGGGATCGAGCCACCGTCCACGGTGCTATAGTCATATACCCCAAGAAGGGAGCCACTTACCCTTTTACTAAGCCTCACGCAGAATTACCAATCATCTTGGAGTGGTGGAAGGAAGATATTGGACAACTTTACGATGAAACGATTCAAAGTGGAGGGGACCCTAATAATTCAAATGCTTACCTCATCAATGGTCAACCCGGCGATCTCTATCCTTGCTCAAAACCAGACACATTCAAGCTCATAGTTGATTACGGCAAAACCTACCTGCTCAGACTAATCAACTCTGCCGTGCAGGAGATGATGTTTTTCGCCATTGCCAATCACAACGTCACGGTTGTAGGCTCAGATGCTAGCTACACCAAGCCATTTTCAACAGATTATGTAACCATATCTCCCGGGCAAACTATTGATCTCTTGTTAAATGCCGACCAAAGCCCCAACAACTACTACATTGCTGCTAAAGCCTATGTTGCCTCGGCTGGAATTCCCTACGACAACACAACCACCACCGCATTACTCCGATACAACAGAAATTCTAGTTCAACCCCTACTTCGTTGCCTAATCTTCCTTCCCATAACGACACCAACGCATCAGTTCACTTTACCAGTAAACTCAAAAGCTTGGCTGATAAAAACCACCCTGTTGACGTGCCACACAAGATAACAACTCATTTGTTTTTTACACTATCCATCAACACACTACCCTGCCCGAGTAATTCATGTACTGGGCCTAATGGGACACGTTTTGCCACCAGTATCAACAACATTAGCTTTGTTGACCCTACCATTGACATATTGCAAGCTTACTATTTCCATGTCAATGGGGCATTTGGAACTCGCTTTCCAAATTCCCCGCCCTTGCTGTTTAATTTTACAGCTCAGGACTTGCCGTTGTACCTACAGACGCCGAAGCAAGCGACGGAGGTGAAGATACTGGAGTACAACTCAACTGTGGAAATTGTGTTTCAGGGGACAAATTTGGTGGGAGGAGATGACCATCCGATGCATCTCCACGGATTCAGTTTCTACGTTGTGGGACGGGGGCTTGGGAATTTTGACAAGGACAAGGACCCTTTGACGTATAATCTTGTTGATCCTCCTCTTCAAAACACCGTCGCTGTCCCTATAAATGGTTGGACTACCATTAGATTCAAGGCAGACAATCCTGGCGTTTGGTTTATGCACTGTCATCTGGATCGACATATGTCATGGGGTATGGACATGACGTTCATAGTGAAAAATGGAAAGGGCCCAGGAGCGCAAATGTTACCTCCGCCACAAGGAATGCCTCCATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0010023 GO:0010035 GO:0010038 GO:0016491 GO:0016722 GO:0017144 GO:0018130 GO:0018958 GO:0019438 GO:0019748 GO:0042221 GO:0043167 GO:0043169 GO:0044237 GO:0044249 GO:0044550 GO:0046189 GO:0046483 GO:0046688 GO:0046872 GO:0046914 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

565

Amino Acids

62.64

Weight (kDa)

6.46

Isoelectric Point (pI)

33.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase_3	PF07732	34 - 148	3.5e-40	Multicopper oxidase
Cu-oxidase	PF00394	164 - 309	3.7e-38	Multicopper oxidase
Cu-oxidase_2	PF07731	413 - 547	5.7e-43	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48100
fragaria_vesca	FvH4_1g24380 FvH4_2g05800 FvH4_5g30730
malus_domestica	MD01G1234900.v1.1 MD01G1235100.v1.1 MD01G1235200.v1.1 MD07G1307400.v1.1 MD07G1308000.v1.1 MD10G1042300.v1.1 MD10G1042400.v1.1 MD10G1042500.v1.1 MD10G1042700.v1.1
prunus_persica	Prupe.2G325200_v2.0.a1 Prupe.6G242000_v2.0.a1 Prupe.8G046800_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1
pyrus_communis	pycom01g24320 pycom01g24330 pycom07g28020 pycom10g02950 pycom17g03690
rosa_chinensis	RchiOBHm_Chr1g0384031 RchiOBHm_Chr2g0120941 RchiOBHm_Chr2g0120971 RchiOBHm_Chr2g0121051 RchiOBHm_Chr2g0121181 RchiOBHm_Chr2g0121211 RchiOBHm_Chr3g0473931 RchiOBHm_Chr3g0473941 RchiOBHm_Chr6g0257941 RchiOBHm_Chr6g0284781
rosa_laevigata	RLG00000008541 RLG00000014737 RLG00000018604 RLG00000018607 RLG00000018608 RLG00000018610 RLG00000018611 RLG00000018613 RLG00000023967 RLG00000023970 RLG00000026078 RLG00000035183
rosa_multiflora	Rmu_sc0000079.1_g000043 Rmu_sc0000079.1_g000062 Rmu_sc0000079.1_g000069 Rmu_sc0000621.1_g000019 Rmu_sc0000621.1_g000025 Rmu_sc0000621.1_g000041 Rmu_sc0000652.1_g000018 Rmu_sc0002414.1_g000030 Rmu_sc0002414.1_g000033 Rmu_sc0002843.1_g000016 Rmu_sc0005137.1_g000035 Rmu_sc0005139.1_g000021
rosa_roxburghii	Rroxscaffold_2G00122530 Rroxscaffold_2G00122570 Rroxscaffold_2G00122580 Rroxscaffold_2G00122650 Rroxscaffold_4G00277080 Rroxscaffold_6G00407610 Rroxscaffold_6G00407620 Rroxscaffold_7G00209050
rosa_rugosa	Rorug01G0444300 Rorug02G0232700 Rorug02G0232700 Rorug02G0232900 Rorug03G0137100 Rorug05G0565600 Rorug05G0566500
rosa_samantha	Rh1BG427300 Rh1CG440100 Rh2CG278100 Rh2CG278200 Rh2CG278700 Rh2CG278800 Rh2CG279100 Rh2DG314200 Rh2DG314300 Rh2DG314600 Rh3AG187200 Rh3DG211700 Rh3DG211800 Rh5AG356600 Rh6BG078000 Rh6BG078700 Rh6CG073300 Rh6DG070300 Rh6DG190200 Rh6DG274700 Rh7BG365900
rosa_wichuraiana	Rw0G018400 Rw1G040270 Rw2G023160 Rw2G023170 Rw2G023190 Rw2G023200 Rw2G023220 Rw2G023230 Rw3G017140 Rw3G017150 Rw4G012840 Rw6G007580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	669
AccI	GTMKAC	1 cut(s)	47
AciI	CCGC	3 cut(s)	906, 1250, 1670
AclWI	GGATC	3 cut(s)	408, 1484, 1599
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	5 cut(s)	879, 928, 1243, 1372, 1447
AcyI	GRCGYC	1 cut(s)	1301
AfaI	GTAC	4 cut(s)	89, 1120, 1292, 1337
AfiI	CCNNNNNNNGG	8 cut(s)	166, 249, 283, 378, 442, 443, 1526, 1676
AflIII	ACRYGT	1 cut(s)	1136
AgsI	TTSAA	8 cut(s)	320, 542, 567, 631, 768, 939, 1502, 1549
AjiI	CACGTC	1 cut(s)	1045
AjnI	CCWGG	3 cut(s)	322, 1561, 1648
AleI	CACNNNNGTG	1 cut(s)	95
AloI	GAACNNNNNNTCC	4 cut(s)	1222, 1254, 1607, 1639
AluBI	AGCT	9 cut(s)	18, 74, 329, 634, 750, 1017, 1167, 1199, 1274
AluI	AGCT	9 cut(s)	18, 74, 329, 634, 750, 1017, 1167, 1199, 1274
Alw26I	GTCTC	1 cut(s)	84
AlwI	GGATC	3 cut(s)	408, 1484, 1599
Ama87I	CYCGRG	2 cut(s)	791, 1105
AoxI	GGCC	3 cut(s)	157, 1124, 1645
ApaI	GGGCCC	1 cut(s)	1649
ApeKI	GCWGC	1 cut(s)	851
ApoI	RAATTY	5 cut(s)	879, 928, 1243, 1372, 1447
Asp700I	GAANNNNTTC	1 cut(s)	537
AspLEI	GCGC	1 cut(s)	1657
AspS9I	GGNCC	8 cut(s)	170, 290, 369, 553, 1124, 1465, 1645, 1646
AsuC2I	CCSGG	4 cut(s)	168, 594, 792, 793
AsuHPI	GGTGA	1 cut(s)	1333
AsuNHI	GCTAGC	1 cut(s)	746
AvaI	CYCGRG	2 cut(s)	791, 1105
AvaII	GGWCC	5 cut(s)	170, 290, 369, 553, 1465
BaeGI	GKGCMC	1 cut(s)	1649
BaeI	ACNNNNGTAYC	2 cut(s)	1319, 1352
BanII	GRGCYC	1 cut(s)	1649
BauI	CACGAG	1 cut(s)	186
BbvI	GCAGC	1 cut(s)	838
BccI	CCATC	2 cut(s)	1094, 1401
BceAI	ACGGC	4 cut(s)	172, 664, 668, 1270
BciT130I	CCWGG	3 cut(s)	324, 1563, 1650
BcnI	CCSGG	4 cut(s)	168, 594, 792, 793
BcoDI	GTCTC	1 cut(s)	84
BfaI	CTAG	4 cut(s)	15, 330, 747, 933
BfmI	CTRYAG	2 cut(s)	423, 1295
BfuAI	ACCTGC	1 cut(s)	669
BisI	GCNGC	1 cut(s)	852
BlsI	GCNGC	1 cut(s)	853
Bme1390I	CCNGG	7 cut(s)	168, 324, 594, 792, 793, 1563, 1650
Bme18I	GGWCC	5 cut(s)	170, 290, 369, 553, 1465
BmeT110I	CYCGRG	2 cut(s)	791, 1105
BmgBI	CACGTC	1 cut(s)	1045
BmgT120I	GGNCC	8 cut(s)	170, 290, 369, 553, 1124, 1465, 1645, 1646
BmiI	GGNNCC	9 cut(s)	171, 275, 370, 371, 448, 554, 555, 1467, 1647
BmrFI	CCNGG	7 cut(s)	168, 324, 594, 792, 793, 1563, 1650
BmrI	ACTGGG	1 cut(s)	1131
BmsI	GCATC	5 cut(s)	66, 733, 995, 1389, 1411
BmtI	GCTAGC	1 cut(s)	750
BmuI	ACTGGG	1 cut(s)	1131
BoxI	GACNNNNGTC	1 cut(s)	1600
BplI	GAGNNNNNCTC	2 cut(s)	1325, 1357
BpmI	CTGGAG	2 cut(s)	213, 1352
Bpu10I	CCTNAGC	1 cut(s)	1275
BpuMI	CCSGG	4 cut(s)	168, 594, 792, 793
BsaBI	GATNNNNATC	2 cut(s)	603, 1392
BsaHI	GRCGYC	1 cut(s)	1301
BsaJI	CCNNGG	8 cut(s)	83, 269, 278, 415, 791, 870, 1408, 1648
BsaXI	ACNNNNNCTCC	6 cut(s)	186, 216, 683, 713, 772, 802
Bsc4I	CCNNNNNNNGG	8 cut(s)	166, 249, 283, 378, 442, 443, 1526, 1676
Bse1I	ACTGG	5 cut(s)	160, 1002, 1126, 1149, 1335
Bse3DI	GCAATG	4 cut(s)	64, 314, 708, 846
Bse8I	GATNNNNATC	2 cut(s)	603, 1392
BseBI	CCWGG	3 cut(s)	324, 1563, 1650
BseDI	CCNNGG	8 cut(s)	83, 269, 278, 415, 791, 870, 1408, 1648
BseGI	GGATG	2 cut(s)	217, 1393
BseJI	GATNNNNATC	2 cut(s)	603, 1392
BseLI	CCNNNNNNNGG	8 cut(s)	166, 249, 283, 378, 442, 443, 1526, 1676
BseMI	GCAATG	4 cut(s)	64, 314, 708, 846
BseMII	CTCAG	4 cut(s)	372, 679, 753, 1289
BseNI	ACTGG	5 cut(s)	160, 1002, 1126, 1149, 1335
BseRI	GAGGAG	3 cut(s)	72, 1398, 1485
BseSI	GKGCMC	1 cut(s)	1649
BseXI	GCAGC	1 cut(s)	838
BsgI	GTGCAG	1 cut(s)	707
BshFI	GGCC	3 cut(s)	159, 1126, 1647
BsiHKCI	CYCGRG	2 cut(s)	791, 1105
BsiSI	CCGG	3 cut(s)	167, 594, 792
BslFI	GGGAC	7 cut(s)	183, 382, 566, 1147, 1381, 1446, 1502
BslI	CCNNNNNNNGG	8 cut(s)	166, 249, 283, 378, 442, 443, 1526, 1676
BsmAI	GTCTC	1 cut(s)	84
BsmFI	GGGAC	7 cut(s)	183, 382, 566, 1147, 1381, 1446, 1502
BsmI	GAATGC	1 cut(s)	1686
BsnI	GGCC	3 cut(s)	159, 1126, 1647
BsoBI	CYCGRG	2 cut(s)	791, 1105
Bsp120I	GGGCCC	1 cut(s)	1645
Bsp1286I	GDGCHC	1 cut(s)	1649
Bsp143I	GATC	5 cut(s)	400, 598, 805, 1489, 1591
Bsp19I	CCATGG	1 cut(s)	278
BspACI	CCGC	3 cut(s)	906, 1250, 1670
BspANI	GGCC	3 cut(s)	159, 1126, 1647
BspCNI	CTCAG	4 cut(s)	371, 678, 752, 1288
BspLI	GGNNCC	9 cut(s)	171, 275, 370, 371, 448, 554, 555, 1467, 1647
BspMI	ACCTGC	1 cut(s)	669
BspOI	GCTAGC	1 cut(s)	750
BspPI	GGATC	3 cut(s)	408, 1484, 1599
BsrDI	GCAATG	4 cut(s)	64, 314, 708, 846
BsrI	ACTGG	5 cut(s)	160, 1002, 1126, 1149, 1335
BssECI	CCNNGG	8 cut(s)	83, 269, 278, 415, 791, 870, 1408, 1648
BssMI	GATC	5 cut(s)	400, 598, 805, 1489, 1591
BssNI	GRCGYC	1 cut(s)	1301
BssSI	CACGAG	1 cut(s)	186
BssT1I	CCWWGG	1 cut(s)	278
Bst2BI	CACGAG	1 cut(s)	186
Bst2UI	CCWGG	3 cut(s)	324, 1563, 1650
Bst6I	CTCTTC	1 cut(s)	1503
BstACI	GRCGYC	1 cut(s)	1301
BstC8I	GCNNGC	6 cut(s)	20, 38, 384, 748, 1197, 1311
BstDEI	CTNAG	5 cut(s)	358, 465, 665, 739, 1275
BstDSI	CCRYGG	3 cut(s)	278, 415, 1408
BstF5I	GGATG	2 cut(s)	217, 1393
BstHHI	GCGC	1 cut(s)	1657
BstKTI	GATC	5 cut(s)	403, 601, 808, 1492, 1594
BstMAI	GTCTC	1 cut(s)	84
BstMBI	GATC	5 cut(s)	400, 598, 805, 1489, 1591
BstMWI	GCNNNNNNNGC	2 cut(s)	857, 866
BstNI	CCWGG	3 cut(s)	324, 1563, 1650
BstNSI	RCATGY	1 cut(s)	386
BstPAI	GACNNNNGTC	1 cut(s)	1600
BstSCI	CCNGG	7 cut(s)	166, 322, 592, 790, 791, 1561, 1648
BstSFI	CTRYAG	2 cut(s)	423, 1295
BstSLI	GKGCMC	1 cut(s)	1649
BstV1I	GCAGC	1 cut(s)	838
BstXI	CCANNNNNNTGG	2 cut(s)	254, 1217
BsuRI	GGCC	3 cut(s)	159, 1126, 1647
BtgI	CCRYGG	3 cut(s)	278, 415, 1408
BtrI	CACGTC	1 cut(s)	1045
BtsCI	GGATG	2 cut(s)	217, 1393
BtsIMutI	CAGTG	2 cut(s)	397, 1579
BveI	ACCTGC	1 cut(s)	669
Cac8I	GCNNGC	6 cut(s)	20, 38, 384, 748, 1197, 1311
CfoI	GCGC	1 cut(s)	1657
Cfr13I	GGNCC	8 cut(s)	170, 290, 369, 553, 1124, 1465, 1645, 1646
Cfr9I	CCCGGG	1 cut(s)	791
CseI	GACGC	1 cut(s)	1309
Csp6I	GTAC	4 cut(s)	88, 1119, 1291, 1336
CspCI	CAANNNNNGTGG	2 cut(s)	1359, 1394
CviAII	CATG	8 cut(s)	254, 279, 383, 1116, 1211, 1605, 1618, 1689
CviQI	GTAC	4 cut(s)	88, 1119, 1291, 1336
DdeI	CTNAG	5 cut(s)	358, 465, 665, 739, 1275
DpnI	GATC	5 cut(s)	402, 600, 807, 1491, 1593
DpnII	GATC	5 cut(s)	400, 598, 805, 1489, 1591
EaeI	YGGCCR	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	1503
EarI	CTCTTC	1 cut(s)	1503
EciI	GGCGGA	1 cut(s)	1659
Eco130I	CCWWGG	1 cut(s)	278
Eco24I	GRGCYC	1 cut(s)	1649
Eco47I	GGWCC	5 cut(s)	170, 290, 369, 553, 1465
Eco88I	CYCGRG	2 cut(s)	791, 1105
EcoO109I	RGGNCCY	4 cut(s)	369, 553, 1465, 1645
EcoRI	GAATTC	1 cut(s)	879
EcoRII	CCWGG	3 cut(s)	322, 1561, 1648
EcoT14I	CCWWGG	1 cut(s)	278
EcoT22I	ATGCAT	1 cut(s)	1404
EcoT38I	GRGCYC	1 cut(s)	1649
ErhI	CCWWGG	1 cut(s)	278
FaeI	CATG	8 cut(s)	257, 282, 386, 1119, 1214, 1608, 1621, 1692
FalI	AAGNNNNNCTT	2 cut(s)	128, 160
FaqI	GGGAC	7 cut(s)	183, 382, 566, 1147, 1381, 1446, 1502
FatI	CATG	8 cut(s)	253, 278, 382, 1115, 1210, 1604, 1617, 1688
FauI	CCCGC	1 cut(s)	1257
FauNDI	CATATG	1 cut(s)	1599
FblI	GTMKAC	1 cut(s)	47
Fnu4HI	GCNGC	1 cut(s)	852
FokI	GGATG	2 cut(s)	224, 1380
FriOI	GRGCYC	1 cut(s)	1649
Fsp4HI	GCNGC	1 cut(s)	852
FspBI	CTAG	4 cut(s)	15, 330, 747, 933
GlaI	GCGC	1 cut(s)	1656
GluI	GCNGC	1 cut(s)	852
GsuI	CTGGAG	2 cut(s)	213, 1352
HaeIII	GGCC	3 cut(s)	159, 1126, 1647
HapII	CCGG	3 cut(s)	167, 594, 792
HgaI	GACGC	1 cut(s)	1309
HhaI	GCGC	1 cut(s)	1657
Hin1I	GRCGYC	1 cut(s)	1301
Hin1II	CATG	8 cut(s)	257, 282, 386, 1119, 1214, 1608, 1621, 1692
Hin6I	GCGC	1 cut(s)	1655
HinP1I	GCGC	1 cut(s)	1655
HincII	GTYRAC	3 cut(s)	590, 1042, 1174
HindII	GTYRAC	3 cut(s)	590, 1042, 1174
HindIII	AAGCTT	3 cut(s)	72, 1015, 1197
HinfI	GANTC	3 cut(s)	538, 1413, 1545
HpaII	CCGG	3 cut(s)	167, 594, 792
HphI	GGTGA	1 cut(s)	1333
Hpy188I	TCNGA	6 cut(s)	286, 361, 668, 742, 917, 1398
Hpy188III	TCNNGA	4 cut(s)	145, 293, 1277, 1589
Hpy99I	CGWCG	2 cut(s)	1318, 1514
HpyAV	CCTTC	4 cut(s)	359, 436, 499, 975
HpyCH4IV	ACGT	6 cut(s)	723, 1044, 1138, 1425, 1475, 1622
HpyCH4V	TGCA	6 cut(s)	22, 29, 688, 1195, 1402, 1579
HpyF10VI	GCNNNNNNNGC	2 cut(s)	857, 866
HpyF3I	CTNAG	5 cut(s)	358, 465, 665, 739, 1275
HpySE526I	ACGT	6 cut(s)	723, 1044, 1138, 1425, 1475, 1622
Hsp92I	GRCGYC	1 cut(s)	1301
Hsp92II	CATG	8 cut(s)	257, 282, 386, 1119, 1214, 1608, 1621, 1692
HspAI	GCGC	1 cut(s)	1655
KflI	GGGWCCC	2 cut(s)	369, 553
Kzo9I	GATC	5 cut(s)	400, 598, 805, 1489, 1591
LmnI	GCTCC	3 cut(s)	326, 446, 1652
Lsp1109I	GCAGC	1 cut(s)	838
LweI	GCATC	5 cut(s)	66, 733, 995, 1389, 1411
MaeI	CTAG	4 cut(s)	15, 330, 747, 933
MaeII	ACGT	6 cut(s)	723, 1044, 1138, 1425, 1475, 1622
MaeIII	GTNAC	4 cut(s)	233, 724, 778, 1662
MalI	GATC	5 cut(s)	402, 600, 807, 1491, 1593
MboI	GATC	5 cut(s)	400, 598, 805, 1489, 1591
MboII	GAAGA	6 cut(s)	52, 116, 521, 953, 1336, 1490
MhlI	GDGCHC	1 cut(s)	1649
MmeI	TCCRAC	2 cut(s)	264, 1511
Mph1103I	ATGCAT	1 cut(s)	1404
MroXI	GAANNNNTTC	1 cut(s)	537
MseI	TTAA	5 cut(s)	11, 261, 815, 1263, 1693
MslI	CAYNNNNRTG	3 cut(s)	95, 252, 1215
MspI	CCGG	3 cut(s)	167, 594, 792
MspR9I	CCNGG	7 cut(s)	168, 324, 594, 792, 793, 1563, 1650
Mva1269I	GAATGC	1 cut(s)	1686
MvaI	CCWGG	3 cut(s)	324, 1563, 1650
MwoI	GCNNNNNNNGC	2 cut(s)	857, 866
NciI	CCSGG	4 cut(s)	168, 594, 792, 793
NcoI	CCATGG	1 cut(s)	278
NdeI	CATATG	1 cut(s)	1599
NdeII	GATC	5 cut(s)	400, 598, 805, 1489, 1591
NheI	GCTAGC	1 cut(s)	746
NlaIII	CATG	8 cut(s)	257, 282, 386, 1119, 1214, 1608, 1621, 1692
NlaIV	GGNNCC	9 cut(s)	171, 275, 370, 371, 448, 554, 555, 1467, 1647
NmeAIII	GCCGAG	1 cut(s)	851
NmuCI	GTSAC	1 cut(s)	724
NsiI	ATGCAT	1 cut(s)	1404
NspI	RCATGY	1 cut(s)	386
OliI	CACNNNNGTG	1 cut(s)	95
PaeI	GCATGC	1 cut(s)	386
PctI	GAATGC	1 cut(s)	1686
PdmI	GAANNNNTTC	1 cut(s)	537
PfeI	GAWTC	3 cut(s)	538, 1413, 1545
PfoI	TCCNGGA	1 cut(s)	166
PkrI	GCNGC	1 cut(s)	853
PpuMI	RGGWCCY	3 cut(s)	369, 553, 1465
PshAI	GACNNNNGTC	1 cut(s)	1600
Psp5II	RGGWCCY	3 cut(s)	369, 553, 1465
Psp6I	CCWGG	3 cut(s)	322, 1561, 1648
PspGI	CCWGG	3 cut(s)	322, 1561, 1648
PspN4I	GGNNCC	9 cut(s)	171, 275, 370, 371, 448, 554, 555, 1467, 1647
PspOMI	GGGCCC	1 cut(s)	1645
PspPI	GGNCC	8 cut(s)	170, 290, 369, 553, 1124, 1465, 1645, 1646
PspPPI	RGGWCCY	3 cut(s)	369, 553, 1465
RsaI	GTAC	4 cut(s)	89, 1120, 1292, 1337
RsaNI	GTAC	4 cut(s)	88, 1119, 1291, 1336
RseI	CAYNNNNRTG	3 cut(s)	95, 252, 1215
SaqAI	TTAA	5 cut(s)	11, 261, 815, 1263, 1693
SatI	GCNGC	1 cut(s)	852
Sau3AI	GATC	5 cut(s)	400, 598, 805, 1489, 1591
Sau96I	GGNCC	8 cut(s)	170, 290, 369, 553, 1124, 1465, 1645, 1646
ScrFI	CCNGG	7 cut(s)	168, 324, 594, 792, 793, 1563, 1650
SduI	GDGCHC	1 cut(s)	1649
SfaNI	GCATC	5 cut(s)	66, 733, 995, 1389, 1411
SfcI	CTRYAG	2 cut(s)	423, 1295
SinI	GGWCC	5 cut(s)	170, 290, 369, 553, 1465
SmaI	CCCGGG	1 cut(s)	793
SmiMI	CAYNNNNRTG	3 cut(s)	95, 252, 1215
SphI	GCATGC	1 cut(s)	386
SsiI	CCGC	3 cut(s)	906, 1250, 1670
SspI	AATATT	1 cut(s)	7
SspMI	CTAG	4 cut(s)	15, 330, 747, 933
StyD4I	CCNGG	7 cut(s)	166, 322, 592, 790, 791, 1561, 1648
StyI	CCWWGG	1 cut(s)	278
TaiI	ACGT	6 cut(s)	726, 1047, 1141, 1428, 1478, 1625
TaqI	TCGA	3 cut(s)	102, 403, 1594
TatI	WGTACW	2 cut(s)	1118, 1335
TfiI	GAWTC	3 cut(s)	538, 1413, 1545
Tru1I	TTAA	5 cut(s)	11, 261, 815, 1263, 1693
Tru9I	TTAA	5 cut(s)	11, 261, 815, 1263, 1693
TscAI	CASTG	2 cut(s)	397, 1586
TseFI	GTSAC	1 cut(s)	724
TseI	GCWGC	1 cut(s)	851
Tsp45I	GTSAC	1 cut(s)	724
TspDTI	ATGAA	5 cut(s)	17, 102, 546, 1104, 1615
TspGWI	ACGGA	2 cut(s)	1331, 1425
TspMI	CCCGGG	1 cut(s)	791
TspRI	CASTG	2 cut(s)	397, 1586
VpaK11BI	GGWCC	5 cut(s)	170, 290, 369, 553, 1465
XapI	RAATTY	5 cut(s)	879, 928, 1243, 1372, 1447
XceI	RCATGY	1 cut(s)	386
XmaI	CCCGGG	1 cut(s)	791
XmiI	GTMKAC	1 cut(s)	47
XmnI	GAANNNNTTC	1 cut(s)	537
XspI	CTAG	4 cut(s)	15, 330, 747, 933
Zsp2I	ATGCAT	1 cut(s)	1404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.