Lignin degradation and detoxification of lignin-derived products
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 231 |
| Acc36I | ACCTGC | 1 cut(s) | 1285 |
| AccB1I | GGYRCC | 1 cut(s) | 335 |
| AccI | GTMKAC | 1 cut(s) | 831 |
| AccII | CGCG | 2 cut(s) | 1108, 1313 |
| AciI | CCGC | 4 cut(s) | 822, 1116, 1220, 1256 |
| AclWI | GGATC | 2 cut(s) | 375, 1454 |
| AcoI | YGGCCR | 3 cut(s) | 124, 819, 1113 |
| AcsI | RAATTY | 1 cut(s) | 447 |
| AcuI | CTGAAG | 3 cut(s) | 494, 519, 1250 |
| AfaI | GTAC | 4 cut(s) | 1250, 1262, 1299, 1307 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 133, 345, 1280, 1496 |
| AflIII | ACRYGT | 2 cut(s) | 1062, 1106 |
| AgsI | TTSAA | 6 cut(s) | 287, 601, 912, 1444, 1472, 1519 |
| AjnI | CCWGG | 3 cut(s) | 562, 760, 1531 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1192, 1224 |
| AluBI | AGCT | 6 cut(s) | 720, 987, 1137, 1169, 1324, 1595 |
| AluI | AGCT | 6 cut(s) | 720, 987, 1137, 1169, 1324, 1595 |
| Alw26I | GTCTC | 4 cut(s) | 156, 631, 983, 1057 |
| AlwI | GGATC | 2 cut(s) | 375, 1454 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1300 |
| AoxI | GGCC | 7 cut(s) | 124, 256, 513, 800, 819, 1094, 1113 |
| ApoI | RAATTY | 1 cut(s) | 447 |
| AspLEI | GCGC | 3 cut(s) | 232, 845, 1246 |
| AspS9I | GGNCC | 8 cut(s) | 137, 257, 386, 708, 848, 1094, 1435, 1586 |
| AsuC2I | CCSGG | 2 cut(s) | 135, 291 |
| AsuHPI | GGTGA | 4 cut(s) | 295, 616, 742, 750 |
| AsuNHI | GCTAGC | 1 cut(s) | 716 |
| AvaII | GGWCC | 6 cut(s) | 137, 386, 708, 848, 1435, 1586 |
| BaeGI | GKGCMC | 1 cut(s) | 1076 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1289, 1322 |
| BalI | TGGCCA | 1 cut(s) | 126 |
| BanI | GGYRCC | 1 cut(s) | 335 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 404, 436, 1281, 1313 |
| BccI | CCATC | 7 cut(s) | 398, 601, 686, 761, 1064, 1371, 1517 |
| BceAI | ACGGC | 1 cut(s) | 271 |
| BciT130I | CCWGG | 3 cut(s) | 564, 762, 1533 |
| BciVI | GTATCC | 2 cut(s) | 585, 1549 |
| BcnI | CCSGG | 2 cut(s) | 135, 291 |
| BcoDI | GTCTC | 4 cut(s) | 156, 631, 983, 1057 |
| BfaI | CTAG | 3 cut(s) | 717, 1119, 1149 |
| BfmI | CTRYAG | 1 cut(s) | 825 |
| BfoI | RGCGCY | 1 cut(s) | 846 |
| BfuAI | ACCTGC | 1 cut(s) | 1285 |
| BfuI | GTATCC | 2 cut(s) | 585, 1549 |
| BisI | GCNGC | 3 cut(s) | 822, 1116, 1256 |
| BlsI | GCNGC | 3 cut(s) | 823, 1117, 1257 |
| BmcAI | AGTACT | 1 cut(s) | 1250 |
| Bme1390I | CCNGG | 5 cut(s) | 135, 291, 564, 762, 1533 |
| Bme18I | GGWCC | 6 cut(s) | 137, 386, 708, 848, 1435, 1586 |
| BmgT120I | GGNCC | 8 cut(s) | 137, 257, 386, 708, 848, 1094, 1435, 1586 |
| BmiI | GGNNCC | 9 cut(s) | 138, 295, 337, 388, 491, 525, 709, 1437, 1587 |
| BmrFI | CCNGG | 5 cut(s) | 135, 291, 564, 762, 1533 |
| BmsI | GCATC | 3 cut(s) | 703, 965, 1381 |
| BmtI | GCTAGC | 1 cut(s) | 720 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1540 |
| BpmI | CTGGAG | 1 cut(s) | 1322 |
| BpuMI | CCSGG | 2 cut(s) | 135, 291 |
| BsaBI | GATNNNNATC | 2 cut(s) | 573, 1362 |
| BsaJI | CCNNGG | 2 cut(s) | 245, 382 |
| BsaWI | WCCGGW | 1 cut(s) | 650 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1313, 1343 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 133, 345, 1280, 1496 |
| Bse1I | ACTGG | 4 cut(s) | 127, 221, 1069, 1305 |
| Bse3DI | GCAATG | 1 cut(s) | 1479 |
| Bse8I | GATNNNNATC | 2 cut(s) | 573, 1362 |
| BseBI | CCWGG | 3 cut(s) | 564, 762, 1533 |
| BseDI | CCNNGG | 2 cut(s) | 245, 382 |
| BseGI | GGATG | 2 cut(s) | 1363, 1363 |
| BseJI | GATNNNNATC | 2 cut(s) | 573, 1362 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 133, 345, 1280, 1496 |
| BseMI | GCAATG | 1 cut(s) | 1479 |
| BseMII | CTCAG | 2 cut(s) | 626, 994 |
| BseNI | ACTGG | 4 cut(s) | 127, 221, 1069, 1305 |
| BseRI | GAGGAG | 1 cut(s) | 1455 |
| BseSI | GKGCMC | 1 cut(s) | 1076 |
| BsgI | GTGCAG | 2 cut(s) | 79, 1313 |
| Bsh1236I | CGCG | 2 cut(s) | 1108, 1313 |
| BshFI | GGCC | 7 cut(s) | 126, 258, 515, 802, 821, 1096, 1115 |
| BshNI | GGYRCC | 1 cut(s) | 335 |
| BsiSI | CCGG | 4 cut(s) | 134, 290, 516, 651 |
| BslFI | GGGAC | 7 cut(s) | 150, 372, 721, 1297, 1351, 1472, 1599 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 133, 345, 1280, 1496 |
| BsmAI | GTCTC | 4 cut(s) | 156, 631, 983, 1057 |
| BsmBI | CGTCTC | 1 cut(s) | 1057 |
| BsmFI | GGGAC | 7 cut(s) | 150, 372, 721, 1297, 1351, 1472, 1599 |
| BsnI | GGCC | 7 cut(s) | 126, 258, 515, 802, 821, 1096, 1115 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1076 |
| Bsp143I | GATC | 5 cut(s) | 51, 312, 367, 568, 1459 |
| Bsp19I | CCATGG | 1 cut(s) | 245 |
| BspACI | CCGC | 4 cut(s) | 822, 1116, 1220, 1256 |
| BspANI | GGCC | 7 cut(s) | 126, 258, 515, 802, 821, 1096, 1115 |
| BspCNI | CTCAG | 2 cut(s) | 627, 993 |
| BspFNI | CGCG | 2 cut(s) | 1108, 1313 |
| BspLI | GGNNCC | 9 cut(s) | 138, 295, 337, 388, 491, 525, 709, 1437, 1587 |
| BspMI | ACCTGC | 1 cut(s) | 1285 |
| BspOI | GCTAGC | 1 cut(s) | 720 |
| BspPI | GGATC | 2 cut(s) | 375, 1454 |
| BspT107I | GGYRCC | 1 cut(s) | 335 |
| BsrDI | GCAATG | 1 cut(s) | 1479 |
| BsrI | ACTGG | 4 cut(s) | 127, 221, 1069, 1305 |
| BssECI | CCNNGG | 2 cut(s) | 245, 382 |
| BssMI | GATC | 5 cut(s) | 51, 312, 367, 568, 1459 |
| BssT1I | CCWWGG | 1 cut(s) | 245 |
| Bst2UI | CCWGG | 3 cut(s) | 564, 762, 1533 |
| Bst6I | CTCTTC | 2 cut(s) | 513, 1473 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1252 |
| BstC8I | GCNNGC | 2 cut(s) | 351, 718 |
| BstDEI | CTNAG | 2 cut(s) | 635, 980 |
| BstDSI | CCRYGG | 2 cut(s) | 245, 382 |
| BstF5I | GGATG | 2 cut(s) | 1363, 1363 |
| BstFNI | CGCG | 2 cut(s) | 1108, 1313 |
| BstH2I | RGCGCY | 1 cut(s) | 846 |
| BstHHI | GCGC | 3 cut(s) | 232, 845, 1246 |
| BstKTI | GATC | 5 cut(s) | 54, 315, 370, 571, 1462 |
| BstMAI | GTCTC | 4 cut(s) | 156, 631, 983, 1057 |
| BstMBI | GATC | 5 cut(s) | 51, 312, 367, 568, 1459 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1252 |
| BstNI | CCWGG | 3 cut(s) | 564, 762, 1533 |
| BstNSI | RCATGY | 1 cut(s) | 353 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1540 |
| BstSCI | CCNGG | 5 cut(s) | 133, 289, 562, 760, 1531 |
| BstSFI | CTRYAG | 1 cut(s) | 825 |
| BstSLI | GKGCMC | 1 cut(s) | 1076 |
| BstUI | CGCG | 2 cut(s) | 1108, 1313 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 221 |
| BsuI | GTATCC | 2 cut(s) | 585, 1549 |
| BsuRI | GGCC | 7 cut(s) | 126, 258, 515, 802, 821, 1096, 1115 |
| BtgI | CCRYGG | 2 cut(s) | 245, 382 |
| BtgZI | GCGATG | 1 cut(s) | 664 |
| BtsCI | GGATG | 2 cut(s) | 1363, 1363 |
| BtsI | GCAGTG | 1 cut(s) | 274 |
| BtsIMutI | CAGTG | 6 cut(s) | 214, 274, 364, 375, 473, 1076 |
| BveI | ACCTGC | 1 cut(s) | 1285 |
| Cac8I | GCNNGC | 2 cut(s) | 351, 718 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1300 |
| CfoI | GCGC | 3 cut(s) | 232, 845, 1246 |
| Cfr13I | GGNCC | 8 cut(s) | 137, 257, 386, 708, 848, 1094, 1435, 1586 |
| CseI | GACGC | 2 cut(s) | 548, 1097 |
| CsiI | ACCWGGT | 1 cut(s) | 760 |
| Csp6I | GTAC | 4 cut(s) | 1249, 1261, 1298, 1306 |
| CviQI | GTAC | 4 cut(s) | 1249, 1261, 1298, 1306 |
| DdeI | CTNAG | 2 cut(s) | 635, 980 |
| DpnI | GATC | 5 cut(s) | 53, 314, 369, 570, 1461 |
| DpnII | GATC | 5 cut(s) | 51, 312, 367, 568, 1459 |
| EaeI | YGGCCR | 3 cut(s) | 124, 819, 1113 |
| Eam1104I | CTCTTC | 2 cut(s) | 513, 1473 |
| EarI | CTCTTC | 2 cut(s) | 513, 1473 |
| Eco130I | CCWWGG | 1 cut(s) | 245 |
| Eco147I | AGGCCT | 1 cut(s) | 802 |
| Eco32I | GATATC | 1 cut(s) | 242 |
| Eco47I | GGWCC | 6 cut(s) | 137, 386, 708, 848, 1435, 1586 |
| Eco57I | CTGAAG | 3 cut(s) | 494, 519, 1250 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1435, 1586 |
| EcoRII | CCWGG | 3 cut(s) | 562, 760, 1531 |
| EcoRV | GATATC | 1 cut(s) | 242 |
| EcoT14I | CCWWGG | 1 cut(s) | 245 |
| EcoT22I | ATGCAT | 2 cut(s) | 958, 1374 |
| ErhI | CCWWGG | 1 cut(s) | 245 |
| Esp3I | CGTCTC | 1 cut(s) | 1057 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 324, 356 |
| FaqI | GGGAC | 7 cut(s) | 150, 372, 721, 1297, 1351, 1472, 1599 |
| FauI | CCCGC | 1 cut(s) | 1227 |
| FauNDI | CATATG | 1 cut(s) | 1539 |
| FblI | GTMKAC | 1 cut(s) | 831 |
| Fnu4HI | GCNGC | 3 cut(s) | 822, 1116, 1256 |
| FokI | GGATG | 2 cut(s) | 1350, 1370 |
| Fsp4HI | GCNGC | 3 cut(s) | 822, 1116, 1256 |
| FspBI | CTAG | 3 cut(s) | 717, 1119, 1149 |
| FspI | TGCGCA | 1 cut(s) | 231 |
| GlaI | GCGC | 3 cut(s) | 231, 844, 1245 |
| GluI | GCNGC | 3 cut(s) | 822, 1116, 1256 |
| GsuI | CTGGAG | 1 cut(s) | 1322 |
| HaeII | RGCGCY | 1 cut(s) | 846 |
| HaeIII | GGCC | 7 cut(s) | 126, 258, 515, 802, 821, 1096, 1115 |
| HapII | CCGG | 4 cut(s) | 134, 290, 516, 651 |
| HgaI | GACGC | 2 cut(s) | 548, 1097 |
| HhaI | GCGC | 3 cut(s) | 232, 845, 1246 |
| Hin6I | GCGC | 3 cut(s) | 230, 843, 1244 |
| HinP1I | GCGC | 3 cut(s) | 230, 843, 1244 |
| HincII | GTYRAC | 2 cut(s) | 560, 1186 |
| HindII | GTYRAC | 2 cut(s) | 560, 1186 |
| HindIII | AAGCTT | 1 cut(s) | 1167 |
| HinfI | GANTC | 3 cut(s) | 90, 664, 1515 |
| HpaII | CCGG | 4 cut(s) | 134, 290, 516, 651 |
| HphI | GGTGA | 4 cut(s) | 295, 616, 742, 750 |
| Hpy166II | GTNNAC | 8 cut(s) | 154, 303, 382, 560, 832, 1126, 1144, 1186 |
| Hpy188I | TCNGA | 7 cut(s) | 253, 464, 538, 592, 798, 1269, 1514 |
| Hpy188III | TCNNGA | 2 cut(s) | 982, 1211 |
| Hpy8I | GTNNAC | 8 cut(s) | 154, 303, 382, 560, 832, 1126, 1144, 1186 |
| Hpy99I | CGWCG | 1 cut(s) | 179 |
| HpyAV | CCTTC | 4 cut(s) | 326, 469, 915, 1274 |
| HpyCH4IV | ACGT | 2 cut(s) | 1014, 1064 |
| HpyCH4V | TGCA | 6 cut(s) | 96, 443, 658, 956, 1294, 1372 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1252 |
| HpyF3I | CTNAG | 2 cut(s) | 635, 980 |
| HpySE526I | ACGT | 2 cut(s) | 1014, 1064 |
| HspAI | GCGC | 3 cut(s) | 230, 843, 1244 |
| Kzo9I | GATC | 5 cut(s) | 51, 312, 367, 568, 1459 |
| LmnI | GCTCC | 4 cut(s) | 293, 789, 984, 1321 |
| LweI | GCATC | 3 cut(s) | 703, 965, 1381 |
| MabI | ACCWGGT | 1 cut(s) | 760 |
| MaeI | CTAG | 3 cut(s) | 717, 1119, 1149 |
| MaeII | ACGT | 2 cut(s) | 1014, 1064 |
| MaeIII | GTNAC | 5 cut(s) | 200, 694, 748, 896, 1382 |
| MalI | GATC | 5 cut(s) | 53, 314, 369, 570, 1461 |
| MboI | GATC | 5 cut(s) | 51, 312, 367, 568, 1459 |
| MboII | GAAGA | 7 cut(s) | 424, 427, 500, 900, 923, 1367, 1460 |
| MhlI | GDGCHC | 1 cut(s) | 1076 |
| MlsI | TGGCCA | 1 cut(s) | 126 |
| MluCI | AATT | 7 cut(s) | 45, 282, 418, 447, 1026, 1081, 1342 |
| MluI | ACGCGT | 1 cut(s) | 1106 |
| MluNI | TGGCCA | 1 cut(s) | 126 |
| MlyI | GAGTC | 1 cut(s) | 84 |
| MmeI | TCCRAC | 2 cut(s) | 231, 1381 |
| MnlI | CCTC | 9 cut(s) | 322, 447, 512, 792, 830, 1274, 1473, 1476, 1617 |
| Mox20I | TGGCCA | 1 cut(s) | 126 |
| Mph1103I | ATGCAT | 2 cut(s) | 958, 1374 |
| MscI | TGGCCA | 1 cut(s) | 126 |
| MseI | TTAA | 2 cut(s) | 186, 1233 |
| MslI | CAYNNNNRTG | 4 cut(s) | 65, 219, 969, 1377 |
| Msp20I | TGGCCA | 1 cut(s) | 126 |
| MspA1I | CMGCKG | 1 cut(s) | 1258 |
| MspI | CCGG | 4 cut(s) | 134, 290, 516, 651 |
| MspR9I | CCNGG | 5 cut(s) | 135, 291, 564, 762, 1533 |
| MvaI | CCWGG | 3 cut(s) | 564, 762, 1533 |
| MvnI | CGCG | 2 cut(s) | 1108, 1313 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1252 |
| NciI | CCSGG | 2 cut(s) | 135, 291 |
| NcoI | CCATGG | 1 cut(s) | 245 |
| NdeI | CATATG | 1 cut(s) | 1539 |
| NdeII | GATC | 5 cut(s) | 51, 312, 367, 568, 1459 |
| NheI | GCTAGC | 1 cut(s) | 716 |
| NlaIV | GGNNCC | 9 cut(s) | 138, 295, 337, 388, 491, 525, 709, 1437, 1587 |
| NmuCI | GTSAC | 1 cut(s) | 748 |
| NsbI | TGCGCA | 1 cut(s) | 231 |
| NsiI | ATGCAT | 2 cut(s) | 958, 1374 |
| NspI | RCATGY | 1 cut(s) | 353 |
| PaeI | GCATGC | 1 cut(s) | 353 |
| PceI | AGGCCT | 1 cut(s) | 802 |
| PfeI | GAWTC | 2 cut(s) | 664, 1515 |
| PfoI | TCCNGGA | 2 cut(s) | 133, 1531 |
| PkrI | GCNGC | 3 cut(s) | 823, 1117, 1257 |
| PleI | GAGTC | 1 cut(s) | 84 |
| PpsI | GAGTC | 1 cut(s) | 84 |
| PpuMI | RGGWCCY | 2 cut(s) | 1435, 1586 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1540 |
| Psp5II | RGGWCCY | 2 cut(s) | 1435, 1586 |
| Psp6I | CCWGG | 3 cut(s) | 562, 760, 1531 |
| PspGI | CCWGG | 3 cut(s) | 562, 760, 1531 |
| PspN4I | GGNNCC | 9 cut(s) | 138, 295, 337, 388, 491, 525, 709, 1437, 1587 |
| PspPI | GGNCC | 8 cut(s) | 137, 257, 386, 708, 848, 1094, 1435, 1586 |
| PspPPI | RGGWCCY | 2 cut(s) | 1435, 1586 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1300 |
| RsaI | GTAC | 4 cut(s) | 1250, 1262, 1299, 1307 |
| RsaNI | GTAC | 4 cut(s) | 1249, 1261, 1298, 1306 |
| RseI | CAYNNNNRTG | 4 cut(s) | 65, 219, 969, 1377 |
| SaqAI | TTAA | 2 cut(s) | 186, 1233 |
| SatI | GCNGC | 3 cut(s) | 822, 1116, 1256 |
| Sau3AI | GATC | 5 cut(s) | 51, 312, 367, 568, 1459 |
| Sau96I | GGNCC | 8 cut(s) | 137, 257, 386, 708, 848, 1094, 1435, 1586 |
| ScaI | AGTACT | 1 cut(s) | 1250 |
| SchI | GAGTC | 1 cut(s) | 84 |
| ScrFI | CCNGG | 5 cut(s) | 135, 291, 564, 762, 1533 |
| SduI | GDGCHC | 1 cut(s) | 1076 |
| SexAI | ACCWGGT | 1 cut(s) | 760 |
| SfaNI | GCATC | 3 cut(s) | 703, 965, 1381 |
| SfcI | CTRYAG | 1 cut(s) | 825 |
| SinI | GGWCC | 6 cut(s) | 137, 386, 708, 848, 1435, 1586 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 65, 219, 969, 1377 |
| SphI | GCATGC | 1 cut(s) | 353 |
| Sse9I | AATT | 7 cut(s) | 45, 282, 418, 447, 1026, 1081, 1342 |
| SseBI | AGGCCT | 1 cut(s) | 802 |
| SsiI | CCGC | 4 cut(s) | 822, 1116, 1220, 1256 |
| SspMI | CTAG | 3 cut(s) | 717, 1119, 1149 |
| StuI | AGGCCT | 1 cut(s) | 802 |
| StyD4I | CCNGG | 5 cut(s) | 133, 289, 562, 760, 1531 |
| StyI | CCWWGG | 1 cut(s) | 245 |
| TaiI | ACGT | 2 cut(s) | 1017, 1067 |
| TaqI | TCGA | 3 cut(s) | 54, 177, 370 |
| TaqII | GACCGA | 2 cut(s) | 154, 725 |
| TasI | AATT | 7 cut(s) | 45, 282, 418, 447, 1026, 1081, 1342 |
| TatI | WGTACW | 2 cut(s) | 1248, 1305 |
| TauI | GCSGC | 3 cut(s) | 824, 1118, 1258 |
| TfiI | GAWTC | 2 cut(s) | 664, 1515 |
| Tru1I | TTAA | 2 cut(s) | 186, 1233 |
| Tru9I | TTAA | 2 cut(s) | 186, 1233 |
| TscAI | CASTG | 6 cut(s) | 221, 281, 364, 382, 473, 1076 |
| TseFI | GTSAC | 1 cut(s) | 748 |
| Tsp45I | GTSAC | 1 cut(s) | 748 |
| TspDTI | ATGAA | 4 cut(s) | 953, 1074, 1367, 1555 |
| TspGWI | ACGGA | 1 cut(s) | 849 |
| TspRI | CASTG | 6 cut(s) | 221, 281, 364, 382, 473, 1076 |
| VpaK11BI | GGWCC | 6 cut(s) | 137, 386, 708, 848, 1435, 1586 |
| XapI | RAATTY | 1 cut(s) | 447 |
| XceI | RCATGY | 1 cut(s) | 353 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 243 |
| XmiI | GTMKAC | 1 cut(s) | 831 |
| XspI | CTAG | 3 cut(s) | 717, 1119, 1149 |
| ZrmI | AGTACT | 1 cut(s) | 1250 |
| Zsp2I | ATGCAT | 2 cut(s) | 958, 1374 |