Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002414.1

Orthogroup ID

OG0000359

Physical Location & Seq

Genomic Coordinates Forward (+)

113997 .. 116347

Gene Structure 2351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002414.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1701 bp

atgtggtctgctaagaagtggaaatcagcacttcaggctttatcatttctactagtactcttccttcatcgccaagcttcagccgattataattgggtcgtgaaagaatccacatatacaaggctgtgcagcactaagtcaatattgacagttaatggaaaatttccgggaccagttttacgagcttatgcaggagatactgtctatgtcaatgttcataacagaggcagatacaacatcactattcactggcatggagtcaagcaaccgaggaatccatggtctgatggtcctgaatacatcacacaatgtggtattcaaccgggtgggagtttcaggcagaagatcatattttctgttgaggaaggaaccctttggtggcacgctcatagtgattggtcccgggcgacggttcatggagcaattattgcctatccaaaaccaggaactagctacccttttcccaagccctatgctgaagttcccataatattaggtgagtggtggaaaagtgatgtaatggaggtacttgatgaatttgttagaaccggaggaactcccaatgtttctgatgcttacaccatcaatggtcaaccaggagacctctatccttgctcaaaatcagaaacattcaaactctctgtggaccaaaacaagacccatctgctccgaatagtcaacgctgccatgaacagcatccttttcttctcagtcgcaaaccataacctgacggtggtcgcagcagacgcagcctacaccgcgccaatctcaacaccctacatcacaatatctcctggacaaaccattgatgccctgttgttcacagaccaacaacctggtcgttattacatggctgctagggcttaccaaggtaacctagcgattggttttgacaacaccacaaccacatcaatagttgaatacaaagaaggcaatggaaatggtaaaactgctccattatttccctaccttccttactataacaacacgaatgcagcctttggctttttcaatagccttaaaagcctagacattaaccaaaccgatgtcgtaaaaaccaccaccactcgaatggtttcaacagtatcggtgaacacactcccttgccttggaaatcaaacctgtgaaggacccaatgggacgcgattagctgccagtatgaacaacataagctttgtggatcccagagtagatatattacaatcttactattactatatcaaaggggtttataaagagggtttcccagattttccaccgttgatttttaacttcacagctgaggacttccctctgatattggaaataccagagagggacacaaaggtgaaggttttggaatatggatcggatgtggaaattgtttttcaaaacacaaatttagtggctgggatagatcatcccatgcatcttcatggccatagcttccacattgttggaactggctttgggaattttgatgtaaaaaaggacccaatgagcttcaatcttgttgatcctcctcttaggaacacagttactgtgcccttaagtggatgggccgctatcagattcaaggccagaaatcctggagtgtggtatttacactgtcatcttgaacgtcacctaacatggggaatgcacaccgtcttcatcgtaaagaatggaaaacacccaaatgaaacgttgctgcctccgccaccagacatgccgccgtgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0010023 GO:0010035 GO:0010038 GO:0016491 GO:0016722 GO:0017144 GO:0018130 GO:0018958 GO:0019438 GO:0019748 GO:0042221 GO:0043167 GO:0043169 GO:0044237 GO:0044249 GO:0044550 GO:0046189 GO:0046483 GO:0046688 GO:0046872 GO:0046914 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

566

Amino Acids

63.35

Weight (kDa)

7.67

Isoelectric Point (pI)

26.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48100
fragaria_vesca	FvH4_1g24380 FvH4_2g05800 FvH4_5g30730
malus_domestica	MD01G1234900.v1.1 MD01G1235100.v1.1 MD01G1235200.v1.1 MD07G1307400.v1.1 MD07G1308000.v1.1 MD10G1042300.v1.1 MD10G1042400.v1.1 MD10G1042500.v1.1 MD10G1042700.v1.1
prunus_persica	Prupe.2G325200_v2.0.a1 Prupe.6G242000_v2.0.a1 Prupe.8G046800_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1
pyrus_communis	pycom01g24320 pycom01g24330 pycom07g28020 pycom10g02950 pycom17g03690
rosa_chinensis	RchiOBHm_Chr1g0384031 RchiOBHm_Chr2g0120941 RchiOBHm_Chr2g0120971 RchiOBHm_Chr2g0121051 RchiOBHm_Chr2g0121181 RchiOBHm_Chr2g0121211 RchiOBHm_Chr3g0473931 RchiOBHm_Chr3g0473941 RchiOBHm_Chr6g0257941 RchiOBHm_Chr6g0284781
rosa_laevigata	RLG00000008541 RLG00000014737 RLG00000018604 RLG00000018607 RLG00000018608 RLG00000018610 RLG00000018611 RLG00000018613 RLG00000023967 RLG00000023970 RLG00000026078 RLG00000035183
rosa_multiflora	Rmu_sc0000079.1_g000043 Rmu_sc0000079.1_g000062 Rmu_sc0000079.1_g000069 Rmu_sc0000621.1_g000019 Rmu_sc0000621.1_g000025 Rmu_sc0000621.1_g000041 Rmu_sc0000652.1_g000018 Rmu_sc0002414.1_g000030 Rmu_sc0002414.1_g000033 Rmu_sc0002843.1_g000016 Rmu_sc0005137.1_g000035 Rmu_sc0005139.1_g000021
rosa_roxburghii	Rroxscaffold_2G00122530 Rroxscaffold_2G00122570 Rroxscaffold_2G00122580 Rroxscaffold_2G00122650 Rroxscaffold_4G00277080 Rroxscaffold_6G00407610 Rroxscaffold_6G00407620 Rroxscaffold_7G00209050
rosa_rugosa	Rorug01G0444300 Rorug02G0232700 Rorug02G0232700 Rorug02G0232900 Rorug03G0137100 Rorug05G0565600 Rorug05G0566500
rosa_samantha	Rh1BG427300 Rh1CG440100 Rh2CG278100 Rh2CG278200 Rh2CG278700 Rh2CG278800 Rh2CG279100 Rh2DG314200 Rh2DG314300 Rh2DG314600 Rh3AG187200 Rh3DG211700 Rh3DG211800 Rh5AG356600 Rh6BG078000 Rh6BG078700 Rh6CG073300 Rh6DG070300 Rh6DG190200 Rh6DG274700 Rh7BG365900
rosa_wichuraiana	Rw0G018400 Rw1G040270 Rw2G023160 Rw2G023170 Rw2G023190 Rw2G023200 Rw2G023220 Rw2G023230 Rw3G017140 Rw3G017150 Rw4G012840 Rw6G007580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	90, 1233
AccII	CGCG	2 cut(s)	761, 1144
AciI	CCGC	4 cut(s)	759, 1542, 1676, 1691
AclI	AACGTT	1 cut(s)	1664
AclWI	GGATC	4 cut(s)	1175, 1188, 1354, 1490
AcoI	YGGCCR	1 cut(s)	1417
AcsI	RAATTY	4 cut(s)	161, 536, 1378, 1453
AcuI	CTGAAG	3 cut(s)	17, 63, 498
AdeI	CACNNNGTG	1 cut(s)	311
AfaI	GTAC	2 cut(s)	57, 528
AfiI	CCNNNNNNNGG	7 cut(s)	378, 409, 443, 733, 1109, 1532, 1612
AflII	CTTAAG	1 cut(s)	1528
AgsI	TTSAA	9 cut(s)	320, 634, 920, 1012, 1080, 1370, 1486, 1555, 1598
AhlI	ACTAGT	1 cut(s)	52
AjnI	CCWGG	5 cut(s)	442, 595, 793, 835, 1567
AleI	CACNNNNGTG	1 cut(s)	1325
AluBI	AGCT	8 cut(s)	77, 185, 453, 1151, 1173, 1280, 1425, 1482
AluI	AGCT	8 cut(s)	77, 185, 453, 1151, 1173, 1280, 1425, 1482
Alw26I	GTCTC	1 cut(s)	594
AlwI	GGATC	4 cut(s)	1175, 1188, 1354, 1490
AlwNI	CAGNNNCTG	1 cut(s)	1520
Ama87I	CYCGRG	1 cut(s)	402
AoxI	GGCC	3 cut(s)	1417, 1539, 1557
ApeKI	GCWGC	8 cut(s)	129, 683, 740, 749, 854, 995, 1151, 1669
ApoI	RAATTY	4 cut(s)	161, 536, 1378, 1453
Asp700I	GAANNNNTTC	1 cut(s)	1075
AspLEI	GCGC	1 cut(s)	763
AspS9I	GGNCC	7 cut(s)	170, 290, 399, 646, 1130, 1471, 1539
AsuC2I	CCSGG	4 cut(s)	168, 324, 403, 404
AsuHPI	GGTGA	4 cut(s)	509, 1102, 1339, 1595
AvaI	CYCGRG	1 cut(s)	402
AvaII	GGWCC	6 cut(s)	170, 290, 399, 646, 1130, 1471
BaeGI	GKGCMC	1 cut(s)	1527
BalI	TGGCCA	1 cut(s)	1419
BamHI	GGATCC	1 cut(s)	1180
BarI	GAAGNNNNNNTAC	2 cut(s)	48, 80
BbsI	GAAGAC	1 cut(s)	1621
BbvCI	CCTCAGC	1 cut(s)	1281
BbvI	GCAGC	8 cut(s)	141, 670, 752, 761, 841, 1007, 1138, 1656
BccI	CCATC	4 cut(s)	281, 590, 669, 1530
BceAI	ACGGC	1 cut(s)	1678
BciT130I	CCWGG	5 cut(s)	444, 597, 795, 837, 1569
BcnI	CCSGG	4 cut(s)	168, 324, 403, 404
BcoDI	GTCTC	1 cut(s)	594
BcuI	ACTAGT	1 cut(s)	52
BfaI	CTAG	5 cut(s)	53, 450, 858, 878, 1028
BfrI	CTTAAG	1 cut(s)	1528
BmcAI	AGTACT	1 cut(s)	57
Bme1390I	CCNGG	9 cut(s)	168, 324, 403, 404, 444, 597, 795, 837, 1569
Bme18I	GGWCC	6 cut(s)	170, 290, 399, 646, 1130, 1471
BmeT110I	CYCGRG	1 cut(s)	402
BmgT120I	GGNCC	7 cut(s)	170, 290, 399, 646, 1130, 1471, 1539
BmiI	GGNNCC	6 cut(s)	171, 370, 401, 1132, 1182, 1473
BmrFI	CCNGG	9 cut(s)	168, 324, 403, 404, 444, 597, 795, 837, 1569
BmsI	GCATC	4 cut(s)	562, 705, 799, 1417
BoxI	GACNNNNGTC	1 cut(s)	734
BpiI	GAAGAC	1 cut(s)	1621
BpmI	CTGGAG	1 cut(s)	1590
Bpu10I	CCTNAGC	1 cut(s)	1281
BpuMI	CCSGG	4 cut(s)	168, 324, 403, 404
BsaI	GGTCTC	1 cut(s)	594
BsaJI	CCNNGG	5 cut(s)	269, 278, 402, 868, 1108
BsaWI	WCCGGW	1 cut(s)	548
BsaXI	ACNNNNNCTCC	4 cut(s)	186, 216, 775, 805
Bsc4I	CCNNNNNNNGG	7 cut(s)	378, 409, 443, 733, 1109, 1532, 1612
Bse1I	ACTGG	4 cut(s)	173, 254, 1155, 1447
Bse3DI	GCAATG	1 cut(s)	940
BseBI	CCWGG	5 cut(s)	444, 597, 795, 837, 1569
BseDI	CCNNGG	5 cut(s)	269, 278, 402, 868, 1108
BseGI	GGATG	4 cut(s)	696, 1357, 1399, 1541
BseLI	CCNNNNNNNGG	7 cut(s)	378, 409, 443, 733, 1109, 1532, 1612
BseMI	GCAATG	1 cut(s)	940
BseMII	CTCAG	2 cut(s)	723, 1272
BseNI	ACTGG	4 cut(s)	173, 254, 1155, 1447
BseRI	GAGGAG	1 cut(s)	1491
BseSI	GKGCMC	1 cut(s)	1527
BseXI	GCAGC	8 cut(s)	141, 670, 752, 761, 841, 1007, 1138, 1656
BseYI	CCCAGC	1 cut(s)	1388
BsgI	GTGCAG	1 cut(s)	148
Bsh1236I	CGCG	2 cut(s)	761, 1144
BshFI	GGCC	3 cut(s)	1419, 1541, 1559
BsiHKCI	CYCGRG	1 cut(s)	402
BsiSI	CCGG	4 cut(s)	167, 323, 403, 549
BslFI	GGGAC	4 cut(s)	183, 385, 1153, 1331
BslI	CCNNNNNNNGG	7 cut(s)	378, 409, 443, 733, 1109, 1532, 1612
BsmAI	GTCTC	1 cut(s)	594
BsmFI	GGGAC	4 cut(s)	183, 385, 1153, 1331
BsmI	GAATGC	2 cut(s)	997, 1623
BsnI	GGCC	3 cut(s)	1419, 1541, 1559
Bso31I	GGTCTC	1 cut(s)	594
BsoBI	CYCGRG	1 cut(s)	402
Bsp1286I	GDGCHC	1 cut(s)	1527
Bsp143I	GATC	5 cut(s)	345, 1180, 1346, 1396, 1495
Bsp19I	CCATGG	1 cut(s)	278
BspACI	CCGC	4 cut(s)	759, 1542, 1676, 1691
BspANI	GGCC	3 cut(s)	1419, 1541, 1559
BspCNI	CTCAG	2 cut(s)	722, 1273
BspFNI	CGCG	2 cut(s)	761, 1144
BspLI	GGNNCC	6 cut(s)	171, 370, 401, 1132, 1182, 1473
BspPI	GGATC	4 cut(s)	1175, 1188, 1354, 1490
BspTI	CTTAAG	1 cut(s)	1528
BspTNI	GGTCTC	1 cut(s)	594
BsrDI	GCAATG	1 cut(s)	940
BsrI	ACTGG	4 cut(s)	173, 254, 1155, 1447
BssECI	CCNNGG	5 cut(s)	269, 278, 402, 868, 1108
BssMI	GATC	5 cut(s)	345, 1180, 1346, 1396, 1495
BssT1I	CCWWGG	3 cut(s)	278, 868, 1108
Bst2UI	CCWGG	5 cut(s)	444, 597, 795, 837, 1569
Bst6I	CTCTTC	1 cut(s)	65
BstAFI	CTTAAG	1 cut(s)	1528
BstAPI	GCANNNNNTGC	1 cut(s)	428
BstC8I	GCNNGC	1 cut(s)	384
BstDEI	CTNAG	5 cut(s)	12, 135, 709, 1281, 1505
BstDSI	CCRYGG	1 cut(s)	278
BstEII	GGTNACC	1 cut(s)	872
BstF5I	GGATG	4 cut(s)	696, 1357, 1399, 1541
BstFNI	CGCG	2 cut(s)	761, 1144
BstHHI	GCGC	1 cut(s)	763
BstKTI	GATC	5 cut(s)	348, 1183, 1349, 1399, 1498
BstMAI	GTCTC	1 cut(s)	594
BstMBI	GATC	5 cut(s)	345, 1180, 1346, 1396, 1495
BstMWI	GCNNNNNNNGC	8 cut(s)	35, 428, 746, 749, 758, 860, 1023, 1675
BstNI	CCWGG	5 cut(s)	444, 597, 795, 837, 1569
BstNSI	RCATGY	1 cut(s)	1690
BstPAI	GACNNNNGTC	1 cut(s)	734
BstPI	GGTNACC	1 cut(s)	872
BstSCI	CCNGG	9 cut(s)	166, 322, 401, 402, 442, 595, 793, 835, 1567
BstSLI	GKGCMC	1 cut(s)	1527
BstUI	CGCG	2 cut(s)	761, 1144
BstV1I	GCAGC	8 cut(s)	141, 670, 752, 761, 841, 1007, 1138, 1656
BstV2I	GAAGAC	1 cut(s)	1621
BstX2I	RGATCY	1 cut(s)	1180
BstXI	CCANNNNNNTGG	3 cut(s)	836, 1072, 1436
BstYI	RGATCY	1 cut(s)	1180
BsuRI	GGCC	3 cut(s)	1419, 1541, 1559
BtgI	CCRYGG	1 cut(s)	278
BtgZI	GCGATG	1 cut(s)	53
BtsCI	GGATG	4 cut(s)	696, 1357, 1399, 1541
BtsIMutI	CAGTG	2 cut(s)	247, 1585
Cac8I	GCNNGC	1 cut(s)	384
CaiI	CAGNNNCTG	1 cut(s)	1520
CfoI	GCGC	1 cut(s)	763
Cfr13I	GGNCC	7 cut(s)	170, 290, 399, 646, 1130, 1471, 1539
Cfr9I	CCCGGG	1 cut(s)	402
CseI	GACGC	2 cut(s)	755, 1150
CsiI	ACCWGGT	1 cut(s)	835
Csp6I	GTAC	2 cut(s)	56, 527
CspCI	CAANNNNNGTGG	2 cut(s)	1365, 1400
CviAII	CATG	9 cut(s)	254, 279, 416, 688, 850, 1405, 1415, 1611, 1687
CviQI	GTAC	2 cut(s)	56, 527
DdeI	CTNAG	5 cut(s)	12, 135, 709, 1281, 1505
DpnI	GATC	5 cut(s)	347, 1182, 1348, 1398, 1497
DpnII	GATC	5 cut(s)	345, 1180, 1346, 1396, 1495
DraIII	CACNNNGTG	1 cut(s)	311
EaeI	YGGCCR	1 cut(s)	1417
Eam1104I	CTCTTC	1 cut(s)	65
EarI	CTCTTC	1 cut(s)	65
EciI	GGCGGA	1 cut(s)	1665
Eco130I	CCWWGG	3 cut(s)	278, 868, 1108
Eco31I	GGTCTC	1 cut(s)	594
Eco47I	GGWCC	6 cut(s)	170, 290, 399, 646, 1130, 1471
Eco57I	CTGAAG	3 cut(s)	17, 63, 498
Eco88I	CYCGRG	1 cut(s)	402
Eco91I	GGTNACC	1 cut(s)	872
EcoO109I	RGGNCCY	2 cut(s)	1130, 1471
EcoO65I	GGTNACC	1 cut(s)	872
EcoRII	CCWGG	5 cut(s)	442, 595, 793, 835, 1567
EcoT14I	CCWWGG	3 cut(s)	278, 868, 1108
EcoT22I	ATGCAT	1 cut(s)	1410
ErhI	CCWWGG	3 cut(s)	278, 868, 1108
FaeI	CATG	9 cut(s)	257, 282, 419, 691, 853, 1408, 1418, 1614, 1690
FalI	AAGNNNNNCTT	2 cut(s)	357, 389
FaqI	GGGAC	4 cut(s)	183, 385, 1153, 1331
FatI	CATG	9 cut(s)	253, 278, 415, 687, 849, 1404, 1414, 1610, 1686
FokI	GGATG	4 cut(s)	683, 1364, 1386, 1548
FspBI	CTAG	5 cut(s)	53, 450, 858, 878, 1028
GlaI	GCGC	1 cut(s)	762
GsaI	CCCAGC	1 cut(s)	1392
GsuI	CTGGAG	1 cut(s)	1590
HaeIII	GGCC	3 cut(s)	1419, 1541, 1559
HapII	CCGG	4 cut(s)	167, 323, 403, 549
HgaI	GACGC	2 cut(s)	755, 1150
HhaI	GCGC	1 cut(s)	763
Hin1II	CATG	9 cut(s)	257, 282, 419, 691, 853, 1408, 1418, 1614, 1690
Hin6I	GCGC	1 cut(s)	761
HinP1I	GCGC	1 cut(s)	761
HincII	GTYRAC	2 cut(s)	593, 679
HindII	GTYRAC	2 cut(s)	593, 679
HindIII	AAGCTT	2 cut(s)	75, 1171
HinfI	GANTC	4 cut(s)	107, 258, 274, 1551
HpaII	CCGG	4 cut(s)	167, 323, 403, 549
HphI	GGTGA	4 cut(s)	509, 1102, 1339, 1595
Hpy166II	GTNNAC	5 cut(s)	593, 646, 679, 822, 1093
Hpy188I	TCNGA	7 cut(s)	286, 571, 625, 671, 1296, 1351, 1550
Hpy188III	TCNNGA	3 cut(s)	100, 293, 1595
Hpy8I	GTNNAC	5 cut(s)	593, 646, 679, 822, 1093
Hpy99I	CGWCG	1 cut(s)	412
HpyAV	CCTTC	6 cut(s)	74, 359, 923, 980, 1121, 1324
HpyCH4IV	ACGT	2 cut(s)	1600, 1664
HpyCH4V	TGCA	5 cut(s)	129, 191, 995, 1408, 1621
HpyF10VI	GCNNNNNNNGC	8 cut(s)	35, 428, 746, 749, 758, 860, 1023, 1675
HpyF3I	CTNAG	5 cut(s)	12, 135, 709, 1281, 1505
HpySE526I	ACGT	2 cut(s)	1600, 1664
Hsp92II	CATG	9 cut(s)	257, 282, 419, 691, 853, 1408, 1418, 1614, 1690
HspAI	GCGC	1 cut(s)	761
Kzo9I	GATC	5 cut(s)	345, 1180, 1346, 1396, 1495
LmnI	GCTCC	3 cut(s)	419, 672, 958
Lsp1109I	GCAGC	8 cut(s)	141, 670, 752, 761, 841, 1007, 1138, 1656
LweI	GCATC	4 cut(s)	562, 705, 799, 1417
MabI	ACCWGGT	1 cut(s)	835
MaeI	CTAG	5 cut(s)	53, 450, 858, 878, 1028
MaeII	ACGT	2 cut(s)	1600, 1664
MaeIII	GTNAC	3 cut(s)	872, 1516, 1601
MalI	GATC	5 cut(s)	347, 1182, 1348, 1398, 1497
MboI	GATC	5 cut(s)	345, 1180, 1346, 1396, 1495
MboII	GAAGA	5 cut(s)	52, 355, 697, 1403, 1621
MflI	RGATCY	1 cut(s)	1180
MhlI	GDGCHC	1 cut(s)	1527
MlsI	TGGCCA	1 cut(s)	1419
MluCI	AATT	7 cut(s)	91, 161, 423, 536, 1359, 1378, 1453
MluNI	TGGCCA	1 cut(s)	1419
MlyI	GAGTC	1 cut(s)	267
MmeI	TCCRAC	1 cut(s)	1417
Mox20I	TGGCCA	1 cut(s)	1419
Mph1103I	ATGCAT	1 cut(s)	1410
MroXI	GAANNNNTTC	1 cut(s)	1075
MscI	TGGCCA	1 cut(s)	1419
MseI	TTAA	5 cut(s)	153, 1020, 1035, 1269, 1529
MslI	CAYNNNNRTG	5 cut(s)	252, 1070, 1325, 1413, 1656
Msp20I	TGGCCA	1 cut(s)	1419
MspA1I	CMGCKG	1 cut(s)	1280
MspCI	CTTAAG	1 cut(s)	1528
MspI	CCGG	4 cut(s)	167, 323, 403, 549
MspR9I	CCNGG	9 cut(s)	168, 324, 403, 404, 444, 597, 795, 837, 1569
Mva1269I	GAATGC	2 cut(s)	997, 1623
MvaI	CCWGG	5 cut(s)	444, 597, 795, 837, 1569
MvnI	CGCG	2 cut(s)	761, 1144
MwoI	GCNNNNNNNGC	8 cut(s)	35, 428, 746, 749, 758, 860, 1023, 1675
NciI	CCSGG	4 cut(s)	168, 324, 403, 404
NcoI	CCATGG	1 cut(s)	278
NdeII	GATC	5 cut(s)	345, 1180, 1346, 1396, 1495
NlaIII	CATG	9 cut(s)	257, 282, 419, 691, 853, 1408, 1418, 1614, 1690
NlaIV	GGNNCC	6 cut(s)	171, 370, 401, 1132, 1182, 1473
NmuCI	GTSAC	1 cut(s)	1601
NsiI	ATGCAT	1 cut(s)	1410
NspI	RCATGY	1 cut(s)	1690
OliI	CACNNNNGTG	1 cut(s)	1325
PctI	GAATGC	2 cut(s)	997, 1623
PdmI	GAANNNNTTC	1 cut(s)	1075
PfeI	GAWTC	3 cut(s)	107, 274, 1551
PfoI	TCCNGGA	3 cut(s)	166, 793, 1567
PleI	GAGTC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	266
PpuMI	RGGWCCY	2 cut(s)	1130, 1471
PshAI	GACNNNNGTC	1 cut(s)	734
PsiI	TTATAA	2 cut(s)	90, 1233
Psp1406I	AACGTT	1 cut(s)	1664
Psp5II	RGGWCCY	2 cut(s)	1130, 1471
Psp6I	CCWGG	5 cut(s)	442, 595, 793, 835, 1567
PspEI	GGTNACC	1 cut(s)	872
PspFI	CCCAGC	1 cut(s)	1388
PspGI	CCWGG	5 cut(s)	442, 595, 793, 835, 1567
PspN4I	GGNNCC	6 cut(s)	171, 370, 401, 1132, 1182, 1473
PspPI	GGNCC	7 cut(s)	170, 290, 399, 646, 1130, 1471, 1539
PspPPI	RGGWCCY	2 cut(s)	1130, 1471
PstNI	CAGNNNCTG	1 cut(s)	1520
PsuI	RGATCY	1 cut(s)	1180
PvuII	CAGCTG	1 cut(s)	1280
RsaI	GTAC	2 cut(s)	57, 528
RsaNI	GTAC	2 cut(s)	56, 527
RseI	CAYNNNNRTG	5 cut(s)	252, 1070, 1325, 1413, 1656
SaqAI	TTAA	5 cut(s)	153, 1020, 1035, 1269, 1529
Sau3AI	GATC	5 cut(s)	345, 1180, 1346, 1396, 1495
Sau96I	GGNCC	7 cut(s)	170, 290, 399, 646, 1130, 1471, 1539
ScaI	AGTACT	1 cut(s)	57
SchI	GAGTC	1 cut(s)	267
ScrFI	CCNGG	9 cut(s)	168, 324, 403, 404, 444, 597, 795, 837, 1569
SduI	GDGCHC	1 cut(s)	1527
SexAI	ACCWGGT	1 cut(s)	835
SfaNI	GCATC	4 cut(s)	562, 705, 799, 1417
SinI	GGWCC	6 cut(s)	170, 290, 399, 646, 1130, 1471
SmaI	CCCGGG	1 cut(s)	404
SmiMI	CAYNNNNRTG	5 cut(s)	252, 1070, 1325, 1413, 1656
SmlI	CTYRAG	1 cut(s)	1528
SmoI	CTYRAG	1 cut(s)	1528
SpeI	ACTAGT	1 cut(s)	52
Sse9I	AATT	7 cut(s)	91, 161, 423, 536, 1359, 1378, 1453
SsiI	CCGC	4 cut(s)	759, 1542, 1676, 1691
SspI	AATATT	2 cut(s)	144, 492
SspMI	CTAG	5 cut(s)	53, 450, 858, 878, 1028
StyD4I	CCNGG	9 cut(s)	166, 322, 401, 402, 442, 595, 793, 835, 1567
StyI	CCWWGG	3 cut(s)	278, 868, 1108
TaiI	ACGT	2 cut(s)	1603, 1667
TaqI	TCGA	1 cut(s)	1069
TasI	AATT	7 cut(s)	91, 161, 423, 536, 1359, 1378, 1453
TatI	WGTACW	1 cut(s)	55
TauI	GCSGC	2 cut(s)	1544, 1693
TfiI	GAWTC	3 cut(s)	107, 274, 1551
Tru1I	TTAA	5 cut(s)	153, 1020, 1035, 1269, 1529
Tru9I	TTAA	5 cut(s)	153, 1020, 1035, 1269, 1529
TscAI	CASTG	2 cut(s)	254, 1592
TseFI	GTSAC	1 cut(s)	1601
TseI	GCWGC	8 cut(s)	129, 683, 740, 749, 854, 995, 1151, 1669
Tsp45I	GTSAC	1 cut(s)	1601
TspDTI	ATGAA	9 cut(s)	56, 206, 404, 549, 704, 1175, 1403, 1621, 1674
TspMI	CCCGGG	1 cut(s)	402
TspRI	CASTG	2 cut(s)	254, 1592
Vha464I	CTTAAG	1 cut(s)	1528
VpaK11BI	GGWCC	6 cut(s)	170, 290, 399, 646, 1130, 1471
XapI	RAATTY	4 cut(s)	161, 536, 1378, 1453
XceI	RCATGY	1 cut(s)	1690
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1069
XmaI	CCCGGG	1 cut(s)	402
XmnI	GAANNNNTTC	1 cut(s)	1075
XspI	CTAG	5 cut(s)	53, 450, 858, 878, 1028
ZrmI	AGTACT	1 cut(s)	57
Zsp2I	ATGCAT	1 cut(s)	1410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.