Rmu_sc0002843.1_g000016

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002843.1
OG0000359
Physical Location & Seq
Forward (+)
57500 .. 61254
3755 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002843.1_g000016.1.cds

Sequence Viewer

Length: 840 bp
atgaaaccccagaagaattgttcgatattattgacagaaattctggggttcttctttcttatcgtgcggttcacctccctagttgaaggcgaagtgcatttctatgattttgttgtaagggagaaaaacttcaccaaactgtgttcaacaaagagcatcttggtagtaaacgatagttttccaggtccagagatacgagttcgcaaaggagatacagtttacgttaatgttcataaccaaggatattatggtttcactattcactggcatgggataaaacaaccaagaaatccgtggtcagatggtccagagtacatcacgcagtgtccaattcttcccggaacaaatttcacttatgaaatctctttatccactgaagaaggaactttatggtggcatgctcatagtgattggacaagagccactgttcatggtgccattgtcatcttaccaagtgtaggaaccacatttccatttcctcaaccggatggagatgagaccattataattggagccttcgctgttcagcacttcagtttgtgcctggatgaaggtcgtttctgtggagataaggctatgagtgcggatcccgttttctctccggctcaagtagaagcacttgctagagtggaggcgtgcaaatggtgttggaacggggcctctctccggttaggccttctcgttcaggctgtgcactccttggactcctcctccatttacctacgttctctttatggtgatgttcttgctttgtactcttcaaggtgcttgtttcggctattggaagcctttggaaaatactttgctagaatgacccaaggatacaaaggatttctatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko01100 map00053 map01100
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

279

Amino Acids

31.45

Weight (kDa)

6.5

Isoelectric Point (pI)

36.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000359)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48100
fragaria_vesca FvH4_1g24380 FvH4_2g05800 FvH4_5g30730
malus_domestica MD01G1234900.v1.1 MD01G1235100.v1.1 MD01G1235200.v1.1 MD07G1307400.v1.1 MD07G1308000.v1.1 MD10G1042300.v1.1 MD10G1042400.v1.1 MD10G1042500.v1.1 MD10G1042700.v1.1
prunus_persica Prupe.2G325200_v2.0.a1 Prupe.6G242000_v2.0.a1 Prupe.8G046800_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1
pyrus_communis pycom01g24320 pycom01g24330 pycom07g28020 pycom10g02950 pycom17g03690
rosa_chinensis RchiOBHm_Chr1g0384031 RchiOBHm_Chr2g0120941 RchiOBHm_Chr2g0120971 RchiOBHm_Chr2g0121051 RchiOBHm_Chr2g0121181 RchiOBHm_Chr2g0121211 RchiOBHm_Chr3g0473931 RchiOBHm_Chr3g0473941 RchiOBHm_Chr6g0257941 RchiOBHm_Chr6g0284781
rosa_laevigata RLG00000008541 RLG00000014737 RLG00000018604 RLG00000018607 RLG00000018608 RLG00000018610 RLG00000018611 RLG00000018613 RLG00000023967 RLG00000023970 RLG00000026078 RLG00000035183
rosa_multiflora Rmu_sc0000079.1_g000043 Rmu_sc0000079.1_g000062 Rmu_sc0000079.1_g000069 Rmu_sc0000621.1_g000019 Rmu_sc0000621.1_g000025 Rmu_sc0000621.1_g000041 Rmu_sc0000652.1_g000018 Rmu_sc0002414.1_g000030 Rmu_sc0002414.1_g000033 Rmu_sc0002843.1_g000016 Rmu_sc0005137.1_g000035 Rmu_sc0005139.1_g000021
rosa_roxburghii Rroxscaffold_2G00122530 Rroxscaffold_2G00122570 Rroxscaffold_2G00122580 Rroxscaffold_2G00122650 Rroxscaffold_4G00277080 Rroxscaffold_6G00407610 Rroxscaffold_6G00407620 Rroxscaffold_7G00209050
rosa_rugosa Rorug01G0444300 Rorug02G0232700 Rorug02G0232700 Rorug02G0232900 Rorug03G0137100 Rorug05G0565600 Rorug05G0566500
rosa_samantha Rh1BG427300 Rh1CG440100 Rh2CG278100 Rh2CG278200 Rh2CG278700 Rh2CG278800 Rh2CG279100 Rh2DG314200 Rh2DG314300 Rh2DG314600 Rh3AG187200 Rh3DG211700 Rh3DG211800 Rh5AG356600 Rh6BG078000 Rh6BG078700 Rh6CG073300 Rh6DG070300 Rh6DG190200 Rh6DG274700 Rh7BG365900
rosa_wichuraiana Rw0G018400 Rw1G040270 Rw2G023160 Rw2G023170 Rw2G023190 Rw2G023200 Rw2G023220 Rw2G023230 Rw3G017140 Rw3G017150 Rw4G012840 Rw6G007580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 506
AccB1I GGYRCC 1 cut(s) 434
AciI CCGC 2 cut(s) 67, 584
AclWI GGATC 2 cut(s) 581, 594
AcsI RAATTY 2 cut(s) 39, 346
AcuI CTGAAG 2 cut(s) 396, 517
AdeI CACNNNGTG 1 cut(s) 324
AfaI GTAC 2 cut(s) 314, 755
AfiI CCNNNNNNNGG 2 cut(s) 458, 666
AgsI TTSAA 3 cut(s) 86, 147, 762
AjnI CCWGG 2 cut(s) 181, 543
AloI GAACNNNNNNTCC 2 cut(s) 454, 486
Alw21I GWGCWC 1 cut(s) 696
Alw26I GTCTC 1 cut(s) 491
Alw44I GTGCAC 1 cut(s) 692
AlwI GGATC 2 cut(s) 581, 594
AoxI GGCC 2 cut(s) 657, 673
ApaLI GTGCAC 1 cut(s) 692
ApoI RAATTY 2 cut(s) 39, 346
Asp700I GAANNNNTTC 1 cut(s) 128
AspS9I GGNCC 3 cut(s) 185, 305, 657
AsuC2I CCSGG 1 cut(s) 339
AsuHPI GGTGA 3 cut(s) 64, 124, 749
AvaII GGWCC 2 cut(s) 185, 305
BaeGI GKGCMC 1 cut(s) 696
BamHI GGATCC 1 cut(s) 586
BanI GGYRCC 1 cut(s) 434
Bbv12I GWGCWC 1 cut(s) 696
BccI CCATC 2 cut(s) 296, 482
BciT130I CCWGG 2 cut(s) 183, 545
BciVI GTATCC 1 cut(s) 815
BcnI CCSGG 1 cut(s) 339
BcoDI GTCTC 1 cut(s) 491
BfaI CTAG 3 cut(s) 80, 624, 807
BfuI GTATCC 1 cut(s) 815
Bme1390I CCNGG 3 cut(s) 183, 339, 545
Bme18I GGWCC 2 cut(s) 185, 305
BmgT120I GGNCC 3 cut(s) 185, 305, 657
BmiI GGNNCC 5 cut(s) 436, 463, 514, 588, 658
BmrFI CCNGG 3 cut(s) 183, 339, 545
BmsI GCATC 1 cut(s) 165
BpuEI CTTGAG 1 cut(s) 591
BpuMI CCSGG 1 cut(s) 339
BsaI GGTCTC 1 cut(s) 491
BsaJI CCNNGG 4 cut(s) 238, 293, 699, 817
BsaWI WCCGGW 2 cut(s) 484, 666
BsaXI ACNNNNNCTCC 4 cut(s) 201, 231, 695, 725
Bsc4I CCNNNNNNNGG 2 cut(s) 458, 666
Bse1I ACTGG 1 cut(s) 269
BseBI CCWGG 2 cut(s) 183, 545
BseDI CCNNGG 4 cut(s) 238, 293, 699, 817
BseGI GGATG 2 cut(s) 493, 553
BseLI CCNNNNNNNGG 2 cut(s) 458, 666
BseNI ACTGG 1 cut(s) 269
BseRI GAGGAG 2 cut(s) 697, 700
BseSI GKGCMC 1 cut(s) 696
BshFI GGCC 2 cut(s) 659, 675
BshNI GGYRCC 1 cut(s) 434
BsiHKAI GWGCWC 1 cut(s) 696
BsiSI CCGG 4 cut(s) 339, 485, 602, 667
BslI CCNNNNNNNGG 2 cut(s) 458, 666
BsmAI GTCTC 1 cut(s) 491
BsnI GGCC 2 cut(s) 659, 675
Bso31I GGTCTC 1 cut(s) 491
Bsp1286I GDGCHC 1 cut(s) 696
Bsp143I GATC 1 cut(s) 586
BspACI CCGC 2 cut(s) 67, 584
BspANI GGCC 2 cut(s) 659, 675
BspLI GGNNCC 5 cut(s) 436, 463, 514, 588, 658
BspPI GGATC 2 cut(s) 581, 594
BspT107I GGYRCC 1 cut(s) 434
BspTNI GGTCTC 1 cut(s) 491
BsrI ACTGG 1 cut(s) 269
BssECI CCNNGG 4 cut(s) 238, 293, 699, 817
BssMI GATC 1 cut(s) 586
BssT1I CCWWGG 3 cut(s) 238, 699, 817
Bst2UI CCWGG 2 cut(s) 183, 545
Bst4CI ACNGT 3 cut(s) 141, 217, 427
Bst6I CTCTTC 1 cut(s) 763
BstC8I GCNNGC 2 cut(s) 399, 637
BstDSI CCRYGG 1 cut(s) 293
BstF5I GGATG 2 cut(s) 493, 553
BstKTI GATC 1 cut(s) 589
BstMAI GTCTC 1 cut(s) 491
BstMBI GATC 1 cut(s) 586
BstMWI GCNNNNNNNGC 1 cut(s) 581
BstNI CCWGG 2 cut(s) 183, 545
BstNSI RCATGY 1 cut(s) 401
BstSCI CCNGG 3 cut(s) 181, 337, 543
BstSLI GKGCMC 1 cut(s) 696
BstX2I RGATCY 1 cut(s) 586
BstYI RGATCY 1 cut(s) 586
BsuI GTATCC 1 cut(s) 815
BsuRI GGCC 2 cut(s) 659, 675
BtgI CCRYGG 1 cut(s) 293
BtsCI GGATG 2 cut(s) 493, 553
BtsI GCAGTG 1 cut(s) 329
BtsIMutI CAGTG 4 cut(s) 262, 329, 372, 423
Cac8I GCNNGC 2 cut(s) 399, 637
Cfr13I GGNCC 3 cut(s) 185, 305, 657
Csp6I GTAC 2 cut(s) 313, 754
CviAII CATG 3 cut(s) 269, 398, 431
CviJI RGCY 9 cut(s) 422, 515, 575, 605, 659, 675, 689, 778, 788
CviKI_1 RGCY 9 cut(s) 422, 515, 575, 605, 659, 675, 689, 778, 788
CviQI GTAC 2 cut(s) 313, 754
DpnI GATC 1 cut(s) 588
DpnII GATC 1 cut(s) 586
DraIII CACNNNGTG 1 cut(s) 324
Eam1104I CTCTTC 1 cut(s) 763
EarI CTCTTC 1 cut(s) 763
Eco130I CCWWGG 3 cut(s) 238, 699, 817
Eco147I AGGCCT 1 cut(s) 675
Eco31I GGTCTC 1 cut(s) 491
Eco47I GGWCC 2 cut(s) 185, 305
Eco57I CTGAAG 2 cut(s) 396, 517
EcoO109I RGGNCCY 1 cut(s) 657
EcoRII CCWGG 2 cut(s) 181, 543
EcoT14I CCWWGG 3 cut(s) 238, 699, 817
ErhI CCWWGG 3 cut(s) 238, 699, 817
FaeI CATG 3 cut(s) 272, 401, 434
FalI AAGNNNNNCTT 2 cut(s) 143, 175
FatI CATG 3 cut(s) 268, 397, 430
FokI GGATG 2 cut(s) 500, 560
FspBI CTAG 3 cut(s) 80, 624, 807
HaeIII GGCC 2 cut(s) 659, 675
HapII CCGG 4 cut(s) 339, 485, 602, 667
Hin1II CATG 3 cut(s) 272, 401, 434
HinfI GANTC 1 cut(s) 704
HpaII CCGG 4 cut(s) 339, 485, 602, 667
HphI GGTGA 3 cut(s) 64, 124, 749
Hpy166II GTNNAC 4 cut(s) 72, 169, 220, 694
Hpy188I TCNGA 1 cut(s) 301
Hpy188III TCNNGA 2 cut(s) 188, 308
Hpy8I GTNNAC 4 cut(s) 72, 169, 220, 694
HpyAV CCTTC 5 cut(s) 80, 374, 526, 545, 686
HpyCH4III ACNGT 3 cut(s) 141, 217, 427
HpyCH4IV ACGT 2 cut(s) 222, 724
HpyCH4V TGCA 3 cut(s) 97, 639, 694
HpyF10VI GCNNNNNNNGC 1 cut(s) 581
HpySE526I ACGT 2 cut(s) 222, 724
Hsp92II CATG 3 cut(s) 272, 401, 434
Kzo9I GATC 1 cut(s) 586
LmnI GCTCC 1 cut(s) 512
LweI GCATC 1 cut(s) 165
MaeI CTAG 3 cut(s) 80, 624, 807
MaeII ACGT 2 cut(s) 222, 724
MalI GATC 1 cut(s) 588
MboI GATC 1 cut(s) 586
MboII GAAGA 5 cut(s) 25, 43, 326, 389, 750
MflI RGATCY 1 cut(s) 586
MhlI GDGCHC 1 cut(s) 696
MluCI AATT 5 cut(s) 16, 39, 330, 346, 507
MlyI GAGTC 1 cut(s) 698
MmeI TCCRAC 1 cut(s) 629
MnlI CCTC 6 cut(s) 85, 489, 625, 670, 718, 721
MroXI GAANNNNTTC 1 cut(s) 128
MseI TTAA 1 cut(s) 225
MslI CAYNNNNRTG 2 cut(s) 102, 267
MspI CCGG 4 cut(s) 339, 485, 602, 667
MspR9I CCNGG 3 cut(s) 183, 339, 545
MvaI CCWGG 2 cut(s) 183, 545
MwoI GCNNNNNNNGC 1 cut(s) 581
NciI CCSGG 1 cut(s) 339
NdeII GATC 1 cut(s) 586
NlaIII CATG 3 cut(s) 272, 401, 434
NlaIV GGNNCC 5 cut(s) 436, 463, 514, 588, 658
NspI RCATGY 1 cut(s) 401
PaeI GCATGC 1 cut(s) 401
PceI AGGCCT 1 cut(s) 675
PdmI GAANNNNTTC 1 cut(s) 128
PfoI TCCNGGA 1 cut(s) 337
PleI GAGTC 1 cut(s) 698
PpsI GAGTC 1 cut(s) 698
PsiI TTATAA 1 cut(s) 506
Psp6I CCWGG 2 cut(s) 181, 543
PspGI CCWGG 2 cut(s) 181, 543
PspN4I GGNNCC 5 cut(s) 436, 463, 514, 588, 658
PspPI GGNCC 3 cut(s) 185, 305, 657
PsuI RGATCY 1 cut(s) 586
RsaI GTAC 2 cut(s) 314, 755
RsaNI GTAC 2 cut(s) 313, 754
RseI CAYNNNNRTG 2 cut(s) 102, 267
SaqAI TTAA 1 cut(s) 225
Sau3AI GATC 1 cut(s) 586
Sau96I GGNCC 3 cut(s) 185, 305, 657
SchI GAGTC 1 cut(s) 698
ScrFI CCNGG 3 cut(s) 183, 339, 545
SduI GDGCHC 1 cut(s) 696
SetI ASST 7 cut(s) 77, 187, 225, 556, 723, 727, 767
SfaNI GCATC 1 cut(s) 165
SinI GGWCC 2 cut(s) 185, 305
SmiMI CAYNNNNRTG 2 cut(s) 102, 267
SmlI CTYRAG 1 cut(s) 606
SmoI CTYRAG 1 cut(s) 606
SphI GCATGC 1 cut(s) 401
Sse9I AATT 5 cut(s) 16, 39, 330, 346, 507
SseBI AGGCCT 1 cut(s) 675
SsiI CCGC 2 cut(s) 67, 584
SspMI CTAG 3 cut(s) 80, 624, 807
StuI AGGCCT 1 cut(s) 675
StyD4I CCNGG 3 cut(s) 181, 337, 543
StyI CCWWGG 3 cut(s) 238, 699, 817
TaaI ACNGT 3 cut(s) 141, 217, 427
TaiI ACGT 2 cut(s) 225, 727
TaqI TCGA 1 cut(s) 23
TasI AATT 5 cut(s) 16, 39, 330, 346, 507
TatI WGTACW 2 cut(s) 312, 753
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TscAI CASTG 4 cut(s) 269, 329, 379, 430
TspDTI ATGAA 5 cut(s) 17, 221, 372, 419, 564
TspGWI ACGGA 1 cut(s) 282
TspRI CASTG 4 cut(s) 269, 329, 379, 430
VneI GTGCAC 1 cut(s) 692
VpaK11BI GGWCC 2 cut(s) 185, 305
XapI RAATTY 2 cut(s) 39, 346
XceI RCATGY 1 cut(s) 401
XcmI CCANNNNNNNNNTGG 2 cut(s) 245, 291
XmnI GAANNNNTTC 1 cut(s) 128
XspI CTAG 3 cut(s) 80, 624, 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.