Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0000359

Physical Location & Seq

Genomic Coordinates Reverse (-)

32282407 .. 32285338

Gene Structure 2932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1235200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1716 bp

ATGCCGTCGTCGATCCGCATGAAGATTTTAATTAGCTTGAAACTTGTAGTGGGCTTGTTATTGTCTACTGTTGGCAACTTCCATTGCCAAGCTTCGCCTCCTCGTTACACTTTTGTGGTGGAAGAAACTCCATACAAACGACTGTGTAGCACAAAAAACATCTTGACTGTAAACGGCCAATTTCCTGGACAAACGATGTATGTTCACGCTGGAGATACTATCGTGGTGGATATCTATAACAAGGGAAATCGTAACATTACCATCCACTGGCATGGAGTTAAGCAACCGAGGAATCCATGGTCGGACGGTCCTGATTACATCACACAGTGTCCTATCCAACCAGGAGCCAGGTTTACCCAAACCATTATATTTTCCTCAGAGGAAGGGACTCTATGGTGGCATGCTCACAGCCAGTGGGATCGAGCCACCGTCCACGGTGCTATAGTCATATACCCCAAGAAGGGAGCCACTTACCCTTTTCCCAAACCTCACGCTGAATTTCCAATCATCTTGGGAGAGTGGTGGAAGGAAGATATCGGTCAACTGTACAGTGAAATGATTCAAAGCGGAGGGGACGCAAATACTTCAACTGCTTTCCTCATCAATGGTCAACCAGGCGATCTCTATCCTTGCTCAAAACCAGACACATTTAAGCTCAAAGTTGTTTCCGGCGAAACCTACCTGCTCAGACTAATCAACTCCGTAGTGCAAGAGATGATGTTTTTTGCCATTGCCAATCACAAAGTCACGGTTGTAGGCTCAGATGCTAGCTACACCAAGCCATTTTCAACAGATTATGTGACCATATCTCCCGGCCAAACCATTGACCTCTTGTTAAATGCGGACCAAATTCCCAACAACTACTACATTGCTGCTAAAGCCTATAGTGCCGGGGCTGGGGTTCCCTACGACAACACAACCACCACGGCCATACTCCTATACCAAGGAAATTCTAATTCATCTCCTACTTCTTTGCCTAATATTCCTTCCCGTAACGACACCAACGCATCGGTTCACTTTACCGGTAAACTCAAAAGCTTGGCTGATAAAAACCACCCCATTGACGTGCCGCACAAGATAACAACTCATTTGCTCTTTACACTCTCCGTCAACTTACTACCCTGCCCGAATAATTCATGTGCTGCGCCAAACGGGACTCGTATTGCCGCCAGTGTCAACAACATTAGCTTTGTCAACCCCACCATTGACATATTGCAAGCTTACTATTACCATGTCAATGGGGTATATGGAACTCGCTTTCCAAATTTCCCGCCCTTGCTATTTAATTTTACAGCTCAGCACTTGCCGTTGTACCTACTCCCGGCGAAACGATCGACAGAGGTGAAGATACTGGAGTACAACTCAATGGTTGAGATTGTGTTTCAGGGGACAAATATAGTGGATGGAGATGACCATCCGATGCATCTCCATGGATTCAGTTTCTACGTTGTGGGATGGGGGTTTGGGAATTTTGACAAGGAAAAGGACCCTTTGACGTATAATCTTGTCGATCCTCCTCTTCAGAACACCATCGCTGTCCCTAAAAATGGTTGGACTACCATTAGATTCAAAGCAGACAATCCTGGAGTTTGGTTTATGCACTGTCATACTGATCGACATATGTCATGGGGCCTAGTCATGACGTTCATAGTGAAAAATGGAAAGGACCTAGGAGCGCAAATTTTACCTCCGCCGCAAGGAATGCCTCCGTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0010023 GO:0010035 GO:0010038 GO:0016491 GO:0016722 GO:0017144 GO:0018130 GO:0018958 GO:0019438 GO:0019748 GO:0042221 GO:0043167 GO:0043169 GO:0044237 GO:0044249 GO:0044550 GO:0046189 GO:0046483 GO:0046688 GO:0046872 GO:0046914 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

572

Amino Acids

63.52

Weight (kDa)

7.67

Isoelectric Point (pI)

33.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase_3	PF07732	40 - 154	3.2e-38	Multicopper oxidase
Cu-oxidase	PF00394	166 - 317	1.5e-38	Multicopper oxidase
Cu-oxidase_2	PF07731	425 - 554	2e-41	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48100
fragaria_vesca	FvH4_1g24380 FvH4_2g05800 FvH4_5g30730
malus_domestica	MD01G1234900.v1.1 MD01G1235100.v1.1 MD01G1235200.v1.1 MD07G1307400.v1.1 MD07G1308000.v1.1 MD10G1042300.v1.1 MD10G1042400.v1.1 MD10G1042500.v1.1 MD10G1042700.v1.1
prunus_persica	Prupe.2G325200_v2.0.a1 Prupe.6G242000_v2.0.a1 Prupe.8G046800_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1
pyrus_communis	pycom01g24320 pycom01g24330 pycom07g28020 pycom10g02950 pycom17g03690
rosa_chinensis	RchiOBHm_Chr1g0384031 RchiOBHm_Chr2g0120941 RchiOBHm_Chr2g0120971 RchiOBHm_Chr2g0121051 RchiOBHm_Chr2g0121181 RchiOBHm_Chr2g0121211 RchiOBHm_Chr3g0473931 RchiOBHm_Chr3g0473941 RchiOBHm_Chr6g0257941 RchiOBHm_Chr6g0284781
rosa_laevigata	RLG00000008541 RLG00000014737 RLG00000018604 RLG00000018607 RLG00000018608 RLG00000018610 RLG00000018611 RLG00000018613 RLG00000023967 RLG00000023970 RLG00000026078 RLG00000035183
rosa_multiflora	Rmu_sc0000079.1_g000043 Rmu_sc0000079.1_g000062 Rmu_sc0000079.1_g000069 Rmu_sc0000621.1_g000019 Rmu_sc0000621.1_g000025 Rmu_sc0000621.1_g000041 Rmu_sc0000652.1_g000018 Rmu_sc0002414.1_g000030 Rmu_sc0002414.1_g000033 Rmu_sc0002843.1_g000016 Rmu_sc0005137.1_g000035 Rmu_sc0005139.1_g000021
rosa_roxburghii	Rroxscaffold_2G00122530 Rroxscaffold_2G00122570 Rroxscaffold_2G00122580 Rroxscaffold_2G00122650 Rroxscaffold_4G00277080 Rroxscaffold_6G00407610 Rroxscaffold_6G00407620 Rroxscaffold_7G00209050
rosa_rugosa	Rorug01G0444300 Rorug02G0232700 Rorug02G0232700 Rorug02G0232900 Rorug03G0137100 Rorug05G0565600 Rorug05G0566500
rosa_samantha	Rh1BG427300 Rh1CG440100 Rh2CG278100 Rh2CG278200 Rh2CG278700 Rh2CG278800 Rh2CG279100 Rh2DG314200 Rh2DG314300 Rh2DG314600 Rh3AG187200 Rh3DG211700 Rh3DG211800 Rh5AG356600 Rh6BG078000 Rh6BG078700 Rh6CG073300 Rh6DG070300 Rh6DG190200 Rh6DG274700 Rh7BG365900
rosa_wichuraiana	Rw0G018400 Rw1G040270 Rw2G023160 Rw2G023170 Rw2G023190 Rw2G023200 Rw2G023220 Rw2G023230 Rw3G017140 Rw3G017150 Rw4G012840 Rw6G007580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	690
AccB7I	CCANNNNNTGG	1 cut(s)	267
AccI	GTMKAC	1 cut(s)	65
AciI	CCGC	8 cut(s)	16, 567, 842, 1070, 1167, 1271, 1691, 1694
AclWI	GGATC	3 cut(s)	7, 426, 1505
AcoI	YGGCCR	3 cut(s)	175, 814, 927
AcsI	RAATTY	6 cut(s)	497, 849, 949, 1264, 1468, 1680
AcuI	CTGAAG	1 cut(s)	1505
AdeI	CACNNNGTG	1 cut(s)	327
AfaI	GTAC	3 cut(s)	548, 1313, 1358
AfiI	CCNNNNNNNGG	7 cut(s)	267, 460, 461, 897, 1321, 1547, 1697
AgeI	ACCGGT	1 cut(s)	1022
AgsI	TTSAA	5 cut(s)	40, 563, 588, 789, 1570
AjiI	CACGTC	1 cut(s)	1066
AjnI	CCWGG	5 cut(s)	184, 340, 347, 613, 1582
AleI	CACNNNNGTG	1 cut(s)	113
AloI	GAACNNNNNNTCC	2 cut(s)	1243, 1275
AluBI	AGCT	8 cut(s)	36, 92, 655, 771, 1038, 1188, 1220, 1295
AluI	AGCT	8 cut(s)	36, 92, 655, 771, 1038, 1188, 1220, 1295
AlwI	GGATC	3 cut(s)	7, 426, 1505
AoxI	GGCC	4 cut(s)	175, 814, 927, 1630
ApeKI	GCWGC	2 cut(s)	872, 1142
ApoI	RAATTY	6 cut(s)	497, 849, 949, 1264, 1468, 1680
AsiGI	ACCGGT	1 cut(s)	1022
Asp700I	GAANNNNTTC	1 cut(s)	558
AspA2I	CCTAGG	1 cut(s)	1669
AspLEI	GCGC	2 cut(s)	1147, 1678
AspS9I	GGNCC	5 cut(s)	308, 844, 1486, 1630, 1666
AsuC2I	CCSGG	3 cut(s)	813, 892, 1322
AsuHPI	GGTGA	1 cut(s)	1354
AsuNHI	GCTAGC	1 cut(s)	767
AvaII	GGWCC	4 cut(s)	308, 844, 1486, 1666
AvrII	CCTAGG	1 cut(s)	1669
BaeI	ACNNNNGTAYC	4 cut(s)	207, 240, 1340, 1373
BbvI	GCAGC	2 cut(s)	859, 1129
BccI	CCATC	5 cut(s)	269, 1397, 1422, 1449, 1538
BceAI	ACGGC	3 cut(s)	190, 942, 1291
BciT130I	CCWGG	5 cut(s)	186, 342, 349, 615, 1584
BcnI	CCSGG	3 cut(s)	813, 892, 1322
BfaI	CTAG	3 cut(s)	768, 1634, 1670
BfmI	CTRYAG	2 cut(s)	441, 883
BfuAI	ACCTGC	1 cut(s)	690
BisI	GCNGC	5 cut(s)	873, 1070, 1143, 1167, 1694
BlnI	CCTAGG	1 cut(s)	1669
BlpI	GCTNAGC	1 cut(s)	1296
BlsI	GCNGC	5 cut(s)	874, 1071, 1144, 1168, 1695
Bme1390I	CCNGG	8 cut(s)	186, 342, 349, 615, 813, 892, 1322, 1584
Bme18I	GGWCC	4 cut(s)	308, 844, 1486, 1666
BmgBI	CACGTC	1 cut(s)	1066
BmgT120I	GGNCC	5 cut(s)	308, 844, 1486, 1630, 1666
BmiI	GGNNCC	5 cut(s)	346, 466, 903, 1488, 1631
BmrFI	CCNGG	8 cut(s)	186, 342, 349, 615, 813, 892, 1322, 1584
BmsI	GCATC	4 cut(s)	754, 1016, 1410, 1432
BmtI	GCTAGC	1 cut(s)	771
BoxI	GACNNNNGTC	1 cut(s)	1621
BplI	GAGNNNNNCTC	2 cut(s)	1346, 1378
BpmI	CTGGAG	3 cut(s)	231, 1373, 1605
Bpu1102I	GCTNAGC	1 cut(s)	1296
BpuMI	CCSGG	3 cut(s)	813, 892, 1322
BsaBI	GATNNNNATC	2 cut(s)	624, 1413
BsaJI	CCNNGG	8 cut(s)	287, 296, 433, 891, 924, 943, 1429, 1669
BsaWI	WCCGGW	1 cut(s)	1022
BsaXI	ACNNNNNCTCC	2 cut(s)	793, 823
Bsc4I	CCNNNNNNNGG	7 cut(s)	267, 460, 461, 897, 1321, 1547, 1697
Bse118I	RCCGGY	1 cut(s)	1022
Bse1I	ACTGG	4 cut(s)	272, 412, 1170, 1356
Bse3DI	GCAATG	3 cut(s)	82, 729, 867
Bse8I	GATNNNNATC	2 cut(s)	624, 1413
BseBI	CCWGG	5 cut(s)	186, 342, 349, 615, 1584
BseDI	CCNNGG	8 cut(s)	287, 296, 433, 891, 924, 943, 1429, 1669
BseGI	GGATG	4 cut(s)	261, 1408, 1414, 1460
BseJI	GATNNNNATC	2 cut(s)	624, 1413
BseLI	CCNNNNNNNGG	7 cut(s)	267, 460, 461, 897, 1321, 1547, 1697
BseMI	GCAATG	3 cut(s)	82, 729, 867
BseMII	CTCAG	4 cut(s)	390, 700, 774, 1310
BseNI	ACTGG	4 cut(s)	272, 412, 1170, 1356
BseRI	GAGGAG	2 cut(s)	90, 1506
BseXI	GCAGC	2 cut(s)	859, 1129
BseYI	CCCAGC	1 cut(s)	896
Bsh1285I	CGRYCG	1 cut(s)	1334
BshFI	GGCC	4 cut(s)	177, 816, 929, 1632
BshTI	ACCGGT	1 cut(s)	1022
BsiEI	CGRYCG	1 cut(s)	1334
BsiSI	CCGG	5 cut(s)	669, 813, 891, 1023, 1322
BslFI	GGGAC	5 cut(s)	400, 587, 1168, 1402, 1523
BslI	CCNNNNNNNGG	7 cut(s)	267, 460, 461, 897, 1321, 1547, 1697
BsmFI	GGGAC	5 cut(s)	400, 587, 1168, 1402, 1523
BsmI	GAATGC	1 cut(s)	1707
BsnI	GGCC	4 cut(s)	177, 816, 929, 1632
Bsp1407I	TGTACA	1 cut(s)	546
Bsp143I	GATC	6 cut(s)	12, 418, 619, 1331, 1510, 1612
Bsp1720I	GCTNAGC	1 cut(s)	1296
Bsp19I	CCATGG	2 cut(s)	296, 1429
BspACI	CCGC	8 cut(s)	16, 567, 842, 1070, 1167, 1271, 1691, 1694
BspANI	GGCC	4 cut(s)	177, 816, 929, 1632
BspCNI	CTCAG	4 cut(s)	389, 699, 773, 1309
BspHI	TCATGA	1 cut(s)	1638
BspLI	GGNNCC	5 cut(s)	346, 466, 903, 1488, 1631
BspMI	ACCTGC	1 cut(s)	690
BspOI	GCTAGC	1 cut(s)	771
BspPI	GGATC	3 cut(s)	7, 426, 1505
BsrDI	GCAATG	3 cut(s)	82, 729, 867
BsrFI	RCCGGY	1 cut(s)	1022
BsrGI	TGTACA	1 cut(s)	546
BsrI	ACTGG	4 cut(s)	272, 412, 1170, 1356
BssAI	RCCGGY	1 cut(s)	1022
BssECI	CCNNGG	8 cut(s)	287, 296, 433, 891, 924, 943, 1429, 1669
BssMI	GATC	6 cut(s)	12, 418, 619, 1331, 1510, 1612
BssT1I	CCWWGG	4 cut(s)	296, 943, 1429, 1669
Bst2UI	CCWGG	5 cut(s)	186, 342, 349, 615, 1584
Bst6I	CTCTTC	1 cut(s)	1524
BstAPI	GCANNNNNTGC	1 cut(s)	1702
BstAUI	TGTACA	1 cut(s)	546
BstC8I	GCNNGC	3 cut(s)	402, 769, 1218
BstDEI	CTNAG	4 cut(s)	376, 686, 760, 1296
BstDSI	CCRYGG	4 cut(s)	296, 433, 924, 1429
BstF5I	GGATG	4 cut(s)	261, 1408, 1414, 1460
BstHHI	GCGC	2 cut(s)	1147, 1678
BstKTI	GATC	6 cut(s)	15, 421, 622, 1334, 1513, 1615
BstMBI	GATC	6 cut(s)	12, 418, 619, 1331, 1510, 1612
BstMCI	CGRYCG	1 cut(s)	1334
BstMWI	GCNNNNNNNGC	3 cut(s)	878, 887, 1702
BstNI	CCWGG	5 cut(s)	186, 342, 349, 615, 1584
BstNSI	RCATGY	1 cut(s)	404
BstPAI	GACNNNNGTC	1 cut(s)	1621
BstSCI	CCNGG	8 cut(s)	184, 340, 347, 613, 811, 890, 1320, 1582
BstSFI	CTRYAG	2 cut(s)	441, 883
BstV1I	GCAGC	2 cut(s)	859, 1129
BstXI	CCANNNNNNTGG	3 cut(s)	185, 272, 1238
BsuRI	GGCC	4 cut(s)	177, 816, 929, 1632
BtgI	CCRYGG	4 cut(s)	296, 433, 924, 1429
BtgZI	GCGATG	1 cut(s)	1516
BtrI	CACGTC	1 cut(s)	1066
BtsCI	GGATG	4 cut(s)	261, 1408, 1414, 1460
BtsIMutI	CAGTG	6 cut(s)	265, 332, 419, 556, 1177, 1600
BveI	ACCTGC	1 cut(s)	690
Cac8I	GCNNGC	3 cut(s)	402, 769, 1218
CciI	TCATGA	1 cut(s)	1638
CfoI	GCGC	2 cut(s)	1147, 1678
Cfr10I	RCCGGY	1 cut(s)	1022
Cfr13I	GGNCC	5 cut(s)	308, 844, 1486, 1630, 1666
CseI	GACGC	1 cut(s)	584
Csp6I	GTAC	3 cut(s)	547, 1312, 1357
CspAI	ACCGGT	1 cut(s)	1022
CspCI	CAANNNNNGTGG	2 cut(s)	1380, 1415
CviAII	CATG	9 cut(s)	19, 272, 297, 401, 1137, 1232, 1430, 1626, 1639
CviQI	GTAC	3 cut(s)	547, 1312, 1357
DdeI	CTNAG	4 cut(s)	376, 686, 760, 1296
DpnI	GATC	6 cut(s)	14, 420, 621, 1333, 1512, 1614
DpnII	GATC	6 cut(s)	12, 418, 619, 1331, 1510, 1612
DraIII	CACNNNGTG	1 cut(s)	327
EaeI	YGGCCR	3 cut(s)	175, 814, 927
Eam1104I	CTCTTC	1 cut(s)	1524
EarI	CTCTTC	1 cut(s)	1524
EciI	GGCGGA	1 cut(s)	1680
Eco130I	CCWWGG	4 cut(s)	296, 943, 1429, 1669
Eco32I	GATATC	2 cut(s)	232, 535
Eco47I	GGWCC	4 cut(s)	308, 844, 1486, 1666
Eco57I	CTGAAG	1 cut(s)	1505
EcoO109I	RGGNCCY	3 cut(s)	1486, 1630, 1666
EcoRII	CCWGG	5 cut(s)	184, 340, 347, 613, 1582
EcoRV	GATATC	2 cut(s)	232, 535
EcoT14I	CCWWGG	4 cut(s)	296, 943, 1429, 1669
EcoT22I	ATGCAT	1 cut(s)	1425
ErhI	CCWWGG	4 cut(s)	296, 943, 1429, 1669
FaeI	CATG	9 cut(s)	22, 275, 300, 404, 1140, 1235, 1433, 1629, 1642
FaqI	GGGAC	5 cut(s)	400, 587, 1168, 1402, 1523
FatI	CATG	9 cut(s)	18, 271, 296, 400, 1136, 1231, 1429, 1625, 1638
FauI	CCCGC	1 cut(s)	1278
FauNDI	CATATG	1 cut(s)	1620
FblI	GTMKAC	1 cut(s)	65
Fnu4HI	GCNGC	5 cut(s)	873, 1070, 1143, 1167, 1694
FokI	GGATG	4 cut(s)	248, 1401, 1415, 1467
Fsp4HI	GCNGC	5 cut(s)	873, 1070, 1143, 1167, 1694
FspBI	CTAG	3 cut(s)	768, 1634, 1670
GlaI	GCGC	2 cut(s)	1146, 1677
GluI	GCNGC	5 cut(s)	873, 1070, 1143, 1167, 1694
GsaI	CCCAGC	1 cut(s)	900
GsuI	CTGGAG	3 cut(s)	231, 1373, 1605
HaeIII	GGCC	4 cut(s)	177, 816, 929, 1632
HapII	CCGG	5 cut(s)	669, 813, 891, 1023, 1322
HgaI	GACGC	1 cut(s)	584
HhaI	GCGC	2 cut(s)	1147, 1678
Hin1II	CATG	9 cut(s)	22, 275, 300, 404, 1140, 1235, 1433, 1629, 1642
Hin6I	GCGC	2 cut(s)	1145, 1676
HinP1I	GCGC	2 cut(s)	1145, 1676
HincII	GTYRAC	5 cut(s)	542, 611, 1111, 1177, 1195
HindII	GTYRAC	5 cut(s)	542, 611, 1111, 1177, 1195
HindIII	AAGCTT	3 cut(s)	90, 1036, 1218
HinfI	GANTC	6 cut(s)	292, 388, 559, 1156, 1434, 1566
HpaII	CCGG	5 cut(s)	669, 813, 891, 1023, 1322
HphI	GGTGA	1 cut(s)	1354
Hpy188I	TCNGA	6 cut(s)	304, 379, 689, 763, 1419, 1524
Hpy188III	TCNNGA	3 cut(s)	163, 311, 1639
Hpy99I	CGWCG	2 cut(s)	10, 13
HpyAV	CCTTC	4 cut(s)	377, 454, 520, 996
HpyCH4IV	ACGT	4 cut(s)	1065, 1446, 1496, 1643
HpyCH4V	TGCA	4 cut(s)	709, 1216, 1423, 1600
HpyF10VI	GCNNNNNNNGC	3 cut(s)	878, 887, 1702
HpyF3I	CTNAG	4 cut(s)	376, 686, 760, 1296
HpySE526I	ACGT	4 cut(s)	1065, 1446, 1496, 1643
Hsp92II	CATG	9 cut(s)	22, 275, 300, 404, 1140, 1235, 1433, 1629, 1642
HspAI	GCGC	2 cut(s)	1145, 1676
Kzo9I	GATC	6 cut(s)	12, 418, 619, 1331, 1510, 1612
LmnI	GCTCC	3 cut(s)	344, 464, 1673
Lsp1109I	GCAGC	2 cut(s)	859, 1129
LweI	GCATC	4 cut(s)	754, 1016, 1410, 1432
MaeI	CTAG	3 cut(s)	768, 1634, 1670
MaeII	ACGT	4 cut(s)	1065, 1446, 1496, 1643
MaeIII	GTNAC	5 cut(s)	104, 251, 745, 799, 992
MalI	GATC	6 cut(s)	14, 420, 621, 1333, 1512, 1614
MboI	GATC	6 cut(s)	12, 418, 619, 1331, 1510, 1612
MboII	GAAGA	5 cut(s)	34, 134, 542, 1357, 1511
MlyI	GAGTC	2 cut(s)	382, 1150
MmeI	TCCRAC	3 cut(s)	282, 361, 1532
Mph1103I	ATGCAT	1 cut(s)	1425
MroXI	GAANNNNTTC	1 cut(s)	558
MseI	TTAA	5 cut(s)	29, 279, 651, 836, 1284
MslI	CAYNNNNRTG	5 cut(s)	113, 270, 1064, 1236, 1428
MspI	CCGG	5 cut(s)	669, 813, 891, 1023, 1322
MspR9I	CCNGG	8 cut(s)	186, 342, 349, 615, 813, 892, 1322, 1584
Mva1269I	GAATGC	1 cut(s)	1707
MvaI	CCWGG	5 cut(s)	186, 342, 349, 615, 1584
MwoI	GCNNNNNNNGC	3 cut(s)	878, 887, 1702
NciI	CCSGG	3 cut(s)	813, 892, 1322
NcoI	CCATGG	2 cut(s)	296, 1429
NdeI	CATATG	1 cut(s)	1620
NdeII	GATC	6 cut(s)	12, 418, 619, 1331, 1510, 1612
NheI	GCTAGC	1 cut(s)	767
NlaIII	CATG	9 cut(s)	22, 275, 300, 404, 1140, 1235, 1433, 1629, 1642
NlaIV	GGNNCC	5 cut(s)	346, 466, 903, 1488, 1631
NmuCI	GTSAC	2 cut(s)	745, 799
NsiI	ATGCAT	1 cut(s)	1425
NspI	RCATGY	1 cut(s)	404
OliI	CACNNNNGTG	1 cut(s)	113
PaeI	GCATGC	1 cut(s)	404
PagI	TCATGA	1 cut(s)	1638
PctI	GAATGC	1 cut(s)	1707
PdmI	GAANNNNTTC	1 cut(s)	558
PfeI	GAWTC	4 cut(s)	292, 559, 1434, 1566
PflMI	CCANNNNNTGG	1 cut(s)	267
PfoI	TCCNGGA	2 cut(s)	184, 1582
PinAI	ACCGGT	1 cut(s)	1022
PkrI	GCNGC	5 cut(s)	874, 1071, 1144, 1168, 1695
Ple19I	CGATCG	1 cut(s)	1334
PleI	GAGTC	2 cut(s)	382, 1150
PpsI	GAGTC	2 cut(s)	382, 1150
PpuMI	RGGWCCY	2 cut(s)	1486, 1666
PshAI	GACNNNNGTC	1 cut(s)	1621
Psp5II	RGGWCCY	2 cut(s)	1486, 1666
Psp6I	CCWGG	5 cut(s)	184, 340, 347, 613, 1582
PspFI	CCCAGC	1 cut(s)	896
PspGI	CCWGG	5 cut(s)	184, 340, 347, 613, 1582
PspN4I	GGNNCC	5 cut(s)	346, 466, 903, 1488, 1631
PspPI	GGNCC	5 cut(s)	308, 844, 1486, 1630, 1666
PspPPI	RGGWCCY	2 cut(s)	1486, 1666
PvuI	CGATCG	1 cut(s)	1334
RsaI	GTAC	3 cut(s)	548, 1313, 1358
RsaNI	GTAC	3 cut(s)	547, 1312, 1357
RseI	CAYNNNNRTG	5 cut(s)	113, 270, 1064, 1236, 1428
SaqAI	TTAA	5 cut(s)	29, 279, 651, 836, 1284
SatI	GCNGC	5 cut(s)	873, 1070, 1143, 1167, 1694
Sau3AI	GATC	6 cut(s)	12, 418, 619, 1331, 1510, 1612
Sau96I	GGNCC	5 cut(s)	308, 844, 1486, 1630, 1666
SchI	GAGTC	2 cut(s)	382, 1150
ScrFI	CCNGG	8 cut(s)	186, 342, 349, 615, 813, 892, 1322, 1584
SfaNI	GCATC	4 cut(s)	754, 1016, 1410, 1432
SfcI	CTRYAG	2 cut(s)	441, 883
SinI	GGWCC	4 cut(s)	308, 844, 1486, 1666
SmiMI	CAYNNNNRTG	5 cut(s)	113, 270, 1064, 1236, 1428
SphI	GCATGC	1 cut(s)	404
SsiI	CCGC	8 cut(s)	16, 567, 842, 1070, 1167, 1271, 1691, 1694
SspI	AATATT	1 cut(s)	982
SspMI	CTAG	3 cut(s)	768, 1634, 1670
StyD4I	CCNGG	8 cut(s)	184, 340, 347, 613, 811, 890, 1320, 1582
StyI	CCWWGG	4 cut(s)	296, 943, 1429, 1669
TaiI	ACGT	4 cut(s)	1068, 1449, 1499, 1646
TaqI	TCGA	5 cut(s)	11, 421, 1334, 1509, 1615
TaqII	GACCGA	1 cut(s)	527
TatI	WGTACW	2 cut(s)	546, 1356
TauI	GCSGC	3 cut(s)	1072, 1169, 1696
TfiI	GAWTC	4 cut(s)	292, 559, 1434, 1566
Tru1I	TTAA	5 cut(s)	29, 279, 651, 836, 1284
Tru9I	TTAA	5 cut(s)	29, 279, 651, 836, 1284
TscAI	CASTG	6 cut(s)	272, 332, 419, 556, 1177, 1607
TseFI	GTSAC	2 cut(s)	745, 799
TseI	GCWGC	2 cut(s)	872, 1142
Tsp45I	GTSAC	2 cut(s)	745, 799
TspDTI	ATGAA	4 cut(s)	35, 948, 1125, 1636
TspGWI	ACGGA	3 cut(s)	691, 1096, 1698
TspRI	CASTG	6 cut(s)	272, 332, 419, 556, 1177, 1607
Van91I	CCANNNNNTGG	1 cut(s)	267
VpaK11BI	GGWCC	4 cut(s)	308, 844, 1486, 1666
XapI	RAATTY	6 cut(s)	497, 849, 949, 1264, 1468, 1680
XceI	RCATGY	1 cut(s)	404
XmaJI	CCTAGG	1 cut(s)	1669
XmiI	GTMKAC	1 cut(s)	65
XmnI	GAANNNNTTC	1 cut(s)	558
XspI	CTAG	3 cut(s)	768, 1634, 1670
Zsp2I	ATGCAT	1 cut(s)	1425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.