RLG00000035183

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000359
Physical Location & Seq
Forward (+)
62477839 .. 62479560
1722 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035183

Sequence Viewer

Length: 477 bp
ATGCTAGTAGTGAATGAAAGTTTTCCCGGGCCGGTCATTCGTGTGCAAAGAGGGGCTATAGTTTATGTCAATGCTCAAAATCAAGGAGCGTATGGCCTTACTATACACTGGCATGGAGTACATCAACCAAGAAACCCGTGGTCAGACGGTCCCGAGTACATCACACTGTGTCCCATTAAACCTGGATCAAATTTTACTTATGAGGTTATATTTTCTGAAGAGGAAGGAACATTATGGTGGCAGGCACATAGTGAATGGACTAGAGCTAGTGTTCATGGTGCCATTGTTGTGATGCCTTTAAAAGAAACTGGTTTTCCATTTATAGAGACTGATGGAGAAGAAATCATTGTTTTCGGATCTTGGTATATTATTGAAGATGTAAATGAGGCGGTTGCGGAGGCACTCACAGATGGCGTCGACCCTCTTCGCTCGGATTGCTACACCATTAATGGTCAACCAGGCGATTTTGCCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

159

Amino Acids

17.61

Weight (kDa)

4.45

Isoelectric Point (pI)

32.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 2 - 99 5.6e-33 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000359)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48100
fragaria_vesca FvH4_1g24380 FvH4_2g05800 FvH4_5g30730
malus_domestica MD01G1234900.v1.1 MD01G1235100.v1.1 MD01G1235200.v1.1 MD07G1307400.v1.1 MD07G1308000.v1.1 MD10G1042300.v1.1 MD10G1042400.v1.1 MD10G1042500.v1.1 MD10G1042700.v1.1
prunus_persica Prupe.2G325200_v2.0.a1 Prupe.6G242000_v2.0.a1 Prupe.8G046800_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1
pyrus_communis pycom01g24320 pycom01g24330 pycom07g28020 pycom10g02950 pycom17g03690
rosa_chinensis RchiOBHm_Chr1g0384031 RchiOBHm_Chr2g0120941 RchiOBHm_Chr2g0120971 RchiOBHm_Chr2g0121051 RchiOBHm_Chr2g0121181 RchiOBHm_Chr2g0121211 RchiOBHm_Chr3g0473931 RchiOBHm_Chr3g0473941 RchiOBHm_Chr6g0257941 RchiOBHm_Chr6g0284781
rosa_laevigata RLG00000008541 RLG00000014737 RLG00000018604 RLG00000018607 RLG00000018608 RLG00000018610 RLG00000018611 RLG00000018613 RLG00000023967 RLG00000023970 RLG00000026078 RLG00000035183
rosa_multiflora Rmu_sc0000079.1_g000043 Rmu_sc0000079.1_g000062 Rmu_sc0000079.1_g000069 Rmu_sc0000621.1_g000019 Rmu_sc0000621.1_g000025 Rmu_sc0000621.1_g000041 Rmu_sc0000652.1_g000018 Rmu_sc0002414.1_g000030 Rmu_sc0002414.1_g000033 Rmu_sc0002843.1_g000016 Rmu_sc0005137.1_g000035 Rmu_sc0005139.1_g000021
rosa_roxburghii Rroxscaffold_2G00122530 Rroxscaffold_2G00122570 Rroxscaffold_2G00122580 Rroxscaffold_2G00122650 Rroxscaffold_4G00277080 Rroxscaffold_6G00407610 Rroxscaffold_6G00407620 Rroxscaffold_7G00209050
rosa_rugosa Rorug01G0444300 Rorug02G0232700 Rorug02G0232700 Rorug02G0232900 Rorug03G0137100 Rorug05G0565600 Rorug05G0566500
rosa_samantha Rh1BG427300 Rh1CG440100 Rh2CG278100 Rh2CG278200 Rh2CG278700 Rh2CG278800 Rh2CG279100 Rh2DG314200 Rh2DG314300 Rh2DG314600 Rh3AG187200 Rh3DG211700 Rh3DG211800 Rh5AG356600 Rh6BG078000 Rh6BG078700 Rh6CG073300 Rh6DG070300 Rh6DG190200 Rh6DG274700 Rh7BG365900
rosa_wichuraiana Rw0G018400 Rw1G040270 Rw2G023160 Rw2G023170 Rw2G023190 Rw2G023200 Rw2G023220 Rw2G023230 Rw3G017140 Rw3G017150 Rw4G012840 Rw6G007580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 278
AccI GTMKAC 1 cut(s) 417
AciI CCGC 2 cut(s) 389, 395
AclWI GGATC 2 cut(s) 193, 364
AcsI RAATTY 1 cut(s) 190
AcuI CTGAAG 1 cut(s) 237
AcyI GRCGYC 1 cut(s) 414
AdeI CACNNNGTG 2 cut(s) 168, 251
AfaI GTAC 2 cut(s) 120, 158
AgsI TTSAA 1 cut(s) 374
AjnI CCWGG 2 cut(s) 181, 457
AluBI AGCT 1 cut(s) 266
AluI AGCT 1 cut(s) 266
Alw26I GTCTC 1 cut(s) 320
AlwI GGATC 2 cut(s) 193, 364
Ama87I CYCGRG 2 cut(s) 26, 152
AoxI GGCC 2 cut(s) 29, 94
ApoI RAATTY 1 cut(s) 190
AseI ATTAAT 1 cut(s) 447
Asp700I GAANNNNTTC 1 cut(s) 21
AspS9I GGNCC 2 cut(s) 29, 149
AsuC2I CCSGG 2 cut(s) 27, 28
AvaI CYCGRG 2 cut(s) 26, 152
AvaII GGWCC 1 cut(s) 149
BanI GGYRCC 1 cut(s) 278
BccI CCATC 2 cut(s) 326, 404
BciT130I CCWGG 2 cut(s) 183, 459
BcnI CCSGG 2 cut(s) 27, 28
BcoDI GTCTC 1 cut(s) 320
BfaI CTAG 3 cut(s) 5, 261, 267
BfmI CTRYAG 1 cut(s) 57
Bme1390I CCNGG 4 cut(s) 27, 28, 183, 459
Bme18I GGWCC 1 cut(s) 149
BmeT110I CYCGRG 2 cut(s) 26, 152
BmgT120I GGNCC 2 cut(s) 29, 149
BmiI GGNNCC 2 cut(s) 151, 280
BmrFI CCNGG 4 cut(s) 27, 28, 183, 459
BmsI GCATC 1 cut(s) 282
BpuMI CCSGG 2 cut(s) 27, 28
BsaHI GRCGYC 1 cut(s) 414
BsaJI CCNNGG 2 cut(s) 26, 137
Bse118I RCCGGY 1 cut(s) 31
Bse1I ACTGG 2 cut(s) 113, 313
BseBI CCWGG 2 cut(s) 183, 459
BseDI CCNNGG 2 cut(s) 26, 137
BseNI ACTGG 2 cut(s) 113, 313
BshFI GGCC 2 cut(s) 31, 96
BshNI GGYRCC 1 cut(s) 278
BsiHKCI CYCGRG 2 cut(s) 26, 152
BsiSI CCGG 2 cut(s) 27, 32
BslFI GGGAC 2 cut(s) 135, 156
BsmAI GTCTC 1 cut(s) 320
BsmFI GGGAC 2 cut(s) 135, 156
BsnI GGCC 2 cut(s) 31, 96
BsoBI CYCGRG 2 cut(s) 26, 152
Bsp143I GATC 2 cut(s) 185, 356
BspACI CCGC 2 cut(s) 389, 395
BspANI GGCC 2 cut(s) 31, 96
BspLI GGNNCC 2 cut(s) 151, 280
BspPI GGATC 2 cut(s) 193, 364
BspT107I GGYRCC 1 cut(s) 278
BsrFI RCCGGY 1 cut(s) 31
BsrI ACTGG 2 cut(s) 113, 313
BssAI RCCGGY 1 cut(s) 31
BssECI CCNNGG 2 cut(s) 26, 137
BssMI GATC 2 cut(s) 185, 356
BssNI GRCGYC 1 cut(s) 414
Bst2UI CCWGG 2 cut(s) 183, 459
Bst4CI ACNGT 2 cut(s) 149, 168
Bst6I CTCTTC 2 cut(s) 213, 429
BstACI GRCGYC 1 cut(s) 414
BstC8I GCNNGC 1 cut(s) 243
BstDSI CCRYGG 1 cut(s) 137
BstKTI GATC 2 cut(s) 188, 359
BstMAI GTCTC 1 cut(s) 320
BstMBI GATC 2 cut(s) 185, 356
BstMWI GCNNNNNNNGC 1 cut(s) 435
BstNI CCWGG 2 cut(s) 183, 459
BstSCI CCNGG 4 cut(s) 25, 26, 181, 457
BstSFI CTRYAG 1 cut(s) 57
BstX2I RGATCY 1 cut(s) 356
BstYI RGATCY 1 cut(s) 356
BsuRI GGCC 2 cut(s) 31, 96
BtgI CCRYGG 1 cut(s) 137
BtsIMutI CAGTG 2 cut(s) 106, 164
Cac8I GCNNGC 1 cut(s) 243
Cfr10I RCCGGY 1 cut(s) 31
Cfr13I GGNCC 2 cut(s) 29, 149
Cfr9I CCCGGG 1 cut(s) 26
CseI GACGC 1 cut(s) 403
Csp6I GTAC 2 cut(s) 119, 157
CviAII CATG 3 cut(s) 113, 275, 474
CviJI RGCY 4 cut(s) 31, 56, 96, 266
CviKI_1 RGCY 4 cut(s) 31, 56, 96, 266
CviQI GTAC 2 cut(s) 119, 157
DpnI GATC 2 cut(s) 187, 358
DpnII GATC 2 cut(s) 185, 356
DraI TTTAAA 1 cut(s) 300
DraIII CACNNNGTG 2 cut(s) 168, 251
Eam1104I CTCTTC 2 cut(s) 213, 429
EarI CTCTTC 2 cut(s) 213, 429
Eco47I GGWCC 1 cut(s) 149
Eco57I CTGAAG 1 cut(s) 237
Eco88I CYCGRG 2 cut(s) 26, 152
EcoRII CCWGG 2 cut(s) 181, 457
FaeI CATG 3 cut(s) 116, 278, 477
FaqI GGGAC 2 cut(s) 135, 156
FatI CATG 3 cut(s) 112, 274, 473
FblI GTMKAC 1 cut(s) 417
FspBI CTAG 3 cut(s) 5, 261, 267
HaeIII GGCC 2 cut(s) 31, 96
HapII CCGG 2 cut(s) 27, 32
HgaI GACGC 1 cut(s) 403
Hin1I GRCGYC 1 cut(s) 414
Hin1II CATG 3 cut(s) 116, 278, 477
HincII GTYRAC 2 cut(s) 418, 455
HindII GTYRAC 2 cut(s) 418, 455
HpaII CCGG 2 cut(s) 27, 32
Hpy166II GTNNAC 2 cut(s) 418, 455
Hpy188I TCNGA 4 cut(s) 145, 217, 356, 433
Hpy188III TCNNGA 1 cut(s) 152
Hpy8I GTNNAC 2 cut(s) 418, 455
Hpy99I CGWCG 1 cut(s) 419
HpyAV CCTTC 1 cut(s) 218
HpyCH4III ACNGT 2 cut(s) 149, 168
HpyCH4V TGCA 1 cut(s) 46
HpyF10VI GCNNNNNNNGC 1 cut(s) 435
Hsp92I GRCGYC 1 cut(s) 414
Hsp92II CATG 3 cut(s) 116, 278, 477
Kzo9I GATC 2 cut(s) 185, 356
LmnI GCTCC 1 cut(s) 86
LpnPI CCDG 9 cut(s) 40, 45, 94, 168, 195, 227, 294, 444, 471
LweI GCATC 1 cut(s) 282
MaeI CTAG 3 cut(s) 5, 261, 267
MalI GATC 2 cut(s) 187, 358
MboI GATC 2 cut(s) 185, 356
MboII GAAGA 4 cut(s) 230, 350, 386, 416
MflI RGATCY 1 cut(s) 356
MluCI AATT 1 cut(s) 190
MnlI CCTC 6 cut(s) 44, 196, 214, 379, 391, 432
MroXI GAANNNNTTC 1 cut(s) 21
MseI TTAA 3 cut(s) 177, 299, 447
MslI CAYNNNNRTG 4 cut(s) 41, 111, 235, 287
MspI CCGG 2 cut(s) 27, 32
MspR9I CCNGG 4 cut(s) 27, 28, 183, 459
MvaI CCWGG 2 cut(s) 183, 459
MwoI GCNNNNNNNGC 1 cut(s) 435
NciI CCSGG 2 cut(s) 27, 28
NdeII GATC 2 cut(s) 185, 356
NlaIII CATG 3 cut(s) 116, 278, 477
NlaIV GGNNCC 2 cut(s) 151, 280
PdmI GAANNNNTTC 1 cut(s) 21
PshBI ATTAAT 1 cut(s) 447
Psp6I CCWGG 2 cut(s) 181, 457
PspGI CCWGG 2 cut(s) 181, 457
PspN4I GGNNCC 2 cut(s) 151, 280
PspPI GGNCC 2 cut(s) 29, 149
PsuI RGATCY 1 cut(s) 356
RsaI GTAC 2 cut(s) 120, 158
RsaNI GTAC 2 cut(s) 119, 157
RseI CAYNNNNRTG 4 cut(s) 41, 111, 235, 287
SalI GTCGAC 1 cut(s) 416
SaqAI TTAA 3 cut(s) 177, 299, 447
Sau3AI GATC 2 cut(s) 185, 356
Sau96I GGNCC 2 cut(s) 29, 149
ScrFI CCNGG 4 cut(s) 27, 28, 183, 459
SetI ASST 3 cut(s) 184, 207, 268
SfaNI GCATC 1 cut(s) 282
SfcI CTRYAG 1 cut(s) 57
SinI GGWCC 1 cut(s) 149
SmaI CCCGGG 1 cut(s) 28
SmiMI CAYNNNNRTG 4 cut(s) 41, 111, 235, 287
Sse9I AATT 1 cut(s) 190
SsiI CCGC 2 cut(s) 389, 395
SspMI CTAG 3 cut(s) 5, 261, 267
StyD4I CCNGG 4 cut(s) 25, 26, 181, 457
TaaI ACNGT 2 cut(s) 149, 168
TaqI TCGA 1 cut(s) 417
TasI AATT 1 cut(s) 190
TatI WGTACW 2 cut(s) 118, 156
Tru1I TTAA 3 cut(s) 177, 299, 447
Tru9I TTAA 3 cut(s) 177, 299, 447
TscAI CASTG 2 cut(s) 113, 171
TspDTI ATGAA 2 cut(s) 30, 263
TspMI CCCGGG 1 cut(s) 26
TspRI CASTG 2 cut(s) 113, 171
VpaK11BI GGWCC 1 cut(s) 149
VspI ATTAAT 1 cut(s) 447
XapI RAATTY 1 cut(s) 190
XcmI CCANNNNNNNNNTGG 1 cut(s) 135
XmaI CCCGGG 1 cut(s) 26
XmiI GTMKAC 1 cut(s) 417
XmnI GAANNNNTTC 1 cut(s) 21
XspI CTAG 3 cut(s) 5, 261, 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.