Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000359

Physical Location & Seq

Genomic Coordinates Reverse (-)

54096361 .. 54096654

Gene Structure 294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0444300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGAGCCAGGGTGTGTATGGTACAGGGGTAGTGGTTAGAGATGACAGAGGAGTCTGCCTTGGGGTGTTGGCAGTACCAAGTGTGGGGTTTGTTAACCCACAGACATGCGAGGTTCTAGCATTAGTGAATGGCTTACATTTTTGCTATCAAGCAGGCTTCACTAATTTGGGGATTGAAGGAGACGCACAGAATGTGTTTGTGGCATTAAATTCCAACCTTGAAGACCTCAGTCCAGATGGAGCTCTAATTGATGAAGCTAAGGTACGTACTTTTGAGTTTGTTTCACTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0010023 GO:0010035 GO:0010038 GO:0016491 GO:0016722 GO:0017144 GO:0018130 GO:0018958 GO:0019438 GO:0019748 GO:0042221 GO:0043167 GO:0043169 GO:0044237 GO:0044249 GO:0044550 GO:0046189 GO:0046483 GO:0046688 GO:0046872 GO:0046914 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

97

Amino Acids

10.26

Weight (kDa)

4.18

Isoelectric Point (pI)

22.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	7 - 86	5.3e-11	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48100
fragaria_vesca	FvH4_1g24380 FvH4_2g05800 FvH4_5g30730
malus_domestica	MD01G1234900.v1.1 MD01G1235100.v1.1 MD01G1235200.v1.1 MD07G1307400.v1.1 MD07G1308000.v1.1 MD10G1042300.v1.1 MD10G1042400.v1.1 MD10G1042500.v1.1 MD10G1042700.v1.1
prunus_persica	Prupe.2G325200_v2.0.a1 Prupe.6G242000_v2.0.a1 Prupe.8G046800_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1
pyrus_communis	pycom01g24320 pycom01g24330 pycom07g28020 pycom10g02950 pycom17g03690
rosa_chinensis	RchiOBHm_Chr1g0384031 RchiOBHm_Chr2g0120941 RchiOBHm_Chr2g0120971 RchiOBHm_Chr2g0121051 RchiOBHm_Chr2g0121181 RchiOBHm_Chr2g0121211 RchiOBHm_Chr3g0473931 RchiOBHm_Chr3g0473941 RchiOBHm_Chr6g0257941 RchiOBHm_Chr6g0284781
rosa_laevigata	RLG00000008541 RLG00000014737 RLG00000018604 RLG00000018607 RLG00000018608 RLG00000018610 RLG00000018611 RLG00000018613 RLG00000023967 RLG00000023970 RLG00000026078 RLG00000035183
rosa_multiflora	Rmu_sc0000079.1_g000043 Rmu_sc0000079.1_g000062 Rmu_sc0000079.1_g000069 Rmu_sc0000621.1_g000019 Rmu_sc0000621.1_g000025 Rmu_sc0000621.1_g000041 Rmu_sc0000652.1_g000018 Rmu_sc0002414.1_g000030 Rmu_sc0002414.1_g000033 Rmu_sc0002843.1_g000016 Rmu_sc0005137.1_g000035 Rmu_sc0005139.1_g000021
rosa_roxburghii	Rroxscaffold_2G00122530 Rroxscaffold_2G00122570 Rroxscaffold_2G00122580 Rroxscaffold_2G00122650 Rroxscaffold_4G00277080 Rroxscaffold_6G00407610 Rroxscaffold_6G00407620 Rroxscaffold_7G00209050
rosa_rugosa	Rorug01G0444300 Rorug02G0232700 Rorug02G0232700 Rorug02G0232900 Rorug03G0137100 Rorug05G0565600 Rorug05G0566500
rosa_samantha	Rh1BG427300 Rh1CG440100 Rh2CG278100 Rh2CG278200 Rh2CG278700 Rh2CG278800 Rh2CG279100 Rh2DG314200 Rh2DG314300 Rh2DG314600 Rh3AG187200 Rh3DG211700 Rh3DG211800 Rh5AG356600 Rh6BG078000 Rh6BG078700 Rh6CG073300 Rh6DG070300 Rh6DG190200 Rh6DG274700 Rh7BG365900
rosa_wichuraiana	Rw0G018400 Rw1G040270 Rw2G023160 Rw2G023170 Rw2G023190 Rw2G023200 Rw2G023220 Rw2G023230 Rw3G017140 Rw3G017150 Rw4G012840 Rw6G007580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	50
AcsI	RAATTY	1 cut(s)	208
AfaI	GTAC	4 cut(s)	22, 75, 264, 268
AfiI	CCNNNNNNNGG	1 cut(s)	83
AgsI	TTSAA	2 cut(s)	176, 221
AjnI	CCWGG	1 cut(s)	6
AluBI	AGCT	2 cut(s)	242, 257
AluI	AGCT	2 cut(s)	242, 257
Alw21I	GWGCWC	1 cut(s)	244
Alw26I	GTCTC	1 cut(s)	174
ApoI	RAATTY	1 cut(s)	208
BaeI	ACNNNNGTAYC	2 cut(s)	12, 45
BanII	GRGCYC	1 cut(s)	244
BarI	GAAGNNNNNNTAC	2 cut(s)	246, 278
BbsI	GAAGAC	1 cut(s)	228
Bbv12I	GWGCWC	1 cut(s)	244
BccI	CCATC	1 cut(s)	230
BciT130I	CCWGG	1 cut(s)	8
BcoDI	GTCTC	1 cut(s)	174
BfaI	CTAG	1 cut(s)	116
Bme1390I	CCNGG	1 cut(s)	8
BmrFI	CCNGG	1 cut(s)	8
BoxI	GACNNNNGTC	1 cut(s)	228
BpiI	GAAGAC	1 cut(s)	228
Bpu10I	CCTNAGC	1 cut(s)	258
BsaAI	YACGTR	1 cut(s)	266
BsaJI	CCNNGG	2 cut(s)	7, 58
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
BseBI	CCWGG	1 cut(s)	8
BseDI	CCNNGG	2 cut(s)	7, 58
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMII	CTCAG	1 cut(s)	241
BseRI	GAGGAG	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	244
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmAI	GTCTC	1 cut(s)	174
BsmBI	CGTCTC	1 cut(s)	174
Bsp1286I	GDGCHC	1 cut(s)	244
BspCNI	CTCAG	1 cut(s)	240
BssECI	CCNNGG	2 cut(s)	7, 58
BssT1I	CCWWGG	1 cut(s)	58
Bst2UI	CCWGG	1 cut(s)	8
BstBAI	YACGTR	1 cut(s)	266
BstC8I	GCNNGC	1 cut(s)	154
BstDEI	CTNAG	2 cut(s)	227, 258
BstMAI	GTCTC	1 cut(s)	174
BstNI	CCWGG	1 cut(s)	8
BstNSI	RCATGY	1 cut(s)	108
BstPAI	GACNNNNGTC	1 cut(s)	228
BstSCI	CCNGG	1 cut(s)	6
BstSNI	TACGTA	1 cut(s)	266
BstV2I	GAAGAC	1 cut(s)	228
Cac8I	GCNNGC	1 cut(s)	154
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	4 cut(s)	21, 74, 263, 267
CviAII	CATG	1 cut(s)	105
CviJI	RGCY	5 cut(s)	6, 132, 156, 242, 257
CviKI_1	RGCY	5 cut(s)	6, 132, 156, 242, 257
CviQI	GTAC	4 cut(s)	21, 74, 263, 267
DdeI	CTNAG	2 cut(s)	227, 258
DrdI	GACNNNNNNGTC	1 cut(s)	50
DseDI	GACNNNNNNGTC	1 cut(s)	50
Ecl136II	GAGCTC	1 cut(s)	242
Eco105I	TACGTA	1 cut(s)	266
Eco130I	CCWWGG	1 cut(s)	58
Eco24I	GRGCYC	1 cut(s)	244
Eco53kI	GAGCTC	1 cut(s)	242
EcoICRI	GAGCTC	1 cut(s)	242
EcoRII	CCWGG	1 cut(s)	6
EcoT14I	CCWWGG	1 cut(s)	58
EcoT38I	GRGCYC	1 cut(s)	244
ErhI	CCWWGG	1 cut(s)	58
Esp3I	CGTCTC	1 cut(s)	174
FaeI	CATG	1 cut(s)	108
FaiI	YATR	2 cut(s)	18, 106
FatI	CATG	1 cut(s)	104
FriOI	GRGCYC	1 cut(s)	244
FspBI	CTAG	1 cut(s)	116
HgaI	GACGC	1 cut(s)	191
Hin1II	CATG	1 cut(s)	108
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HinfI	GANTC	1 cut(s)	51
HpaI	GTTAAC	1 cut(s)	94
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188III	TCNNGA	1 cut(s)	233
Hpy8I	GTNNAC	1 cut(s)	94
HpyAV	CCTTC	1 cut(s)	170
HpyCH4IV	ACGT	1 cut(s)	265
HpyF3I	CTNAG	2 cut(s)	227, 258
HpySE526I	ACGT	1 cut(s)	265
Hsp92II	CATG	1 cut(s)	108
KspAI	GTTAAC	1 cut(s)	94
LmnI	GCTCC	1 cut(s)	239
LpnPI	CCDG	4 cut(s)	9, 20, 138, 246
MaeI	CTAG	1 cut(s)	116
MaeII	ACGT	1 cut(s)	265
MboII	GAAGA	1 cut(s)	233
MhlI	GDGCHC	1 cut(s)	244
MluCI	AATT	3 cut(s)	163, 208, 246
MlyI	GAGTC	1 cut(s)	60
MmeI	TCCRAC	1 cut(s)	237
MnlI	CCTC	3 cut(s)	41, 103, 236
MseI	TTAA	2 cut(s)	93, 206
MslI	CAYNNNNRTG	1 cut(s)	103
MspR9I	CCNGG	1 cut(s)	8
MvaI	CCWGG	1 cut(s)	8
NlaIII	CATG	1 cut(s)	108
NspI	RCATGY	1 cut(s)	108
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
Ppu21I	YACGTR	1 cut(s)	266
PshAI	GACNNNNGTC	1 cut(s)	228
Psp124BI	GAGCTC	1 cut(s)	244
Psp6I	CCWGG	1 cut(s)	6
PspGI	CCWGG	1 cut(s)	6
RsaI	GTAC	4 cut(s)	22, 75, 264, 268
RsaNI	GTAC	4 cut(s)	21, 74, 263, 267
RseI	CAYNNNNRTG	1 cut(s)	103
SacI	GAGCTC	1 cut(s)	244
SaqAI	TTAA	2 cut(s)	93, 206
SchI	GAGTC	1 cut(s)	60
ScrFI	CCNGG	1 cut(s)	8
SduI	GDGCHC	1 cut(s)	244
SetI	ASST	7 cut(s)	114, 219, 228, 244, 259, 264, 268
SmiMI	CAYNNNNRTG	1 cut(s)	103
SnaBI	TACGTA	1 cut(s)	266
Sse9I	AATT	3 cut(s)	163, 208, 246
SspMI	CTAG	1 cut(s)	116
SstI	GAGCTC	1 cut(s)	244
StyD4I	CCNGG	1 cut(s)	6
StyI	CCWWGG	1 cut(s)	58
TaiI	ACGT	1 cut(s)	268
TasI	AATT	3 cut(s)	163, 208, 246
Tru1I	TTAA	2 cut(s)	93, 206
Tru9I	TTAA	2 cut(s)	93, 206
TspDTI	ATGAA	1 cut(s)	267
XapI	RAATTY	1 cut(s)	208
XceI	RCATGY	1 cut(s)	108
XcmI	CCANNNNNNNNNTGG	1 cut(s)	14
XspI	CTAG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.