Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000359

Physical Location & Seq

Genomic Coordinates Forward (+)

11271620 .. 11273430

Gene Structure 1811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0137100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGCCTCCATGGGCGCCTCCTACTGGTGCTACACGTGCAGCCGCATGATTCGGGTCCGGGTCCGGGCCCAAGACTCGATCTTTTGCCCCGACTGCGGCGCCGGGTTCATCGAGGAGATCCAGACCCCGACCCGATCTCCTCTCAACCACCCATTTCCGGCCGCCGCGATTTTCCTCGACAACACGCCGATATCGCAGAGCCCGAGCCCCAGGCTGCGGCGGAGCCAGAGGAGCAGCCGCGACCGATCCCCTTTCAACCCGGTAATCGTGCTCCGCGGCCCGCCGGATTCCGGAGCCCCGGCTACGGAAACCGACCCGGGGACTTTTGAGCTGTACTACGACGACGGAGCGGGGTTGGGGCTTCGGCCGCTGCCGTCGAGCATGTCGGATTTCTTGATGGGGTCGGGTTTCGACCGGTTGCTCCACCAGTTGACCCAATTGGAGAACGGGGTCGGAAGATTGGACCACCCGCCGGCCTCGAAGGCCGCGATCGAGTCGATGCCGGTGATCAAAATCGAGGACAGCCACGTCAAGACGGAGTCGCACTGCGCGGTGTGTAAGGAGGCGTTTGAGCTTGATTCGGAGGCGCGTGAGATGCCCTGTAAGCACATTTACCATAATGATTGTATCTTTCCTTGGCTTTCGATTCGGAATTCGTGTCCGGTGTGTCGTCATCAGCTGCCGAGTGACGTACGCGGCGGTGGTGGGAGTGGCAGGCCCTCACTGGAGACTGCTCTGATCGGAGAGGAAGAGACTGTGGGATTGACTATATGGAGGTTACCGGGAGGCGGATTCGCTGTGGGGAGGTTCACCGGAGGAAGAAGAGCGGCGGAGCGTGAGCTTCCGGTGGTGTACACTGAGATGGACGGTGGGTTCAACACTGCTGGTGGTGCTCCGAGGATGATTTCGTTGGCTTCGAGTGGAAGAAGAACAAGGGAGAGTGGTGGTTTTGCTAGAGCTTTTCGAAGTTTCTTCTCCTTTTTCGGGAGGCTTAGGAGCTCATCTTCAAGGTCGAGCTCGGAGTCTCGTTTAGCAAGAAGAAGTCGGAGCAGTAGTGTGTTCAGTAGATCTTCACGGCAGCGGAATCAGGGCTGGGCTTTTGAAGATGATGAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0010023 GO:0010035 GO:0010038 GO:0016491 GO:0016722 GO:0017144 GO:0018130 GO:0018958 GO:0019438 GO:0019748 GO:0042221 GO:0043167 GO:0043169 GO:0044237 GO:0044249 GO:0044550 GO:0046189 GO:0046483 GO:0046688 GO:0046872 GO:0046914 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

372

Amino Acids

40.87

Weight (kDa)

8.72

Isoelectric Point (pI)

80.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_19	PF14369	7 - 40	1e-13	zinc-ribbon
zf-rbx1	PF12678	178 - 224	2e-06	RING-H2 zinc finger domain
zf-RING_2	PF13639	182 - 224	7.2e-12	Ring finger domain
zf-C3HC4_2	PF13923	183 - 223	4.2e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	183 - 223	1.9e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	183 - 210	4.5e-06	RING-like zinc finger
DUF1117	PF06547	253 - 359	8.7e-41	Protein of unknown function (DUF1117)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48100
fragaria_vesca	FvH4_1g24380 FvH4_2g05800 FvH4_5g30730
malus_domestica	MD01G1234900.v1.1 MD01G1235100.v1.1 MD01G1235200.v1.1 MD07G1307400.v1.1 MD07G1308000.v1.1 MD10G1042300.v1.1 MD10G1042400.v1.1 MD10G1042500.v1.1 MD10G1042700.v1.1
prunus_persica	Prupe.2G325200_v2.0.a1 Prupe.6G242000_v2.0.a1 Prupe.8G046800_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1
pyrus_communis	pycom01g24320 pycom01g24330 pycom07g28020 pycom10g02950 pycom17g03690
rosa_chinensis	RchiOBHm_Chr1g0384031 RchiOBHm_Chr2g0120941 RchiOBHm_Chr2g0120971 RchiOBHm_Chr2g0121051 RchiOBHm_Chr2g0121181 RchiOBHm_Chr2g0121211 RchiOBHm_Chr3g0473931 RchiOBHm_Chr3g0473941 RchiOBHm_Chr6g0257941 RchiOBHm_Chr6g0284781
rosa_laevigata	RLG00000008541 RLG00000014737 RLG00000018604 RLG00000018607 RLG00000018608 RLG00000018610 RLG00000018611 RLG00000018613 RLG00000023967 RLG00000023970 RLG00000026078 RLG00000035183
rosa_multiflora	Rmu_sc0000079.1_g000043 Rmu_sc0000079.1_g000062 Rmu_sc0000079.1_g000069 Rmu_sc0000621.1_g000019 Rmu_sc0000621.1_g000025 Rmu_sc0000621.1_g000041 Rmu_sc0000652.1_g000018 Rmu_sc0002414.1_g000030 Rmu_sc0002414.1_g000033 Rmu_sc0002843.1_g000016 Rmu_sc0005137.1_g000035 Rmu_sc0005139.1_g000021
rosa_roxburghii	Rroxscaffold_2G00122530 Rroxscaffold_2G00122570 Rroxscaffold_2G00122580 Rroxscaffold_2G00122650 Rroxscaffold_4G00277080 Rroxscaffold_6G00407610 Rroxscaffold_6G00407620 Rroxscaffold_7G00209050
rosa_rugosa	Rorug01G0444300 Rorug02G0232700 Rorug02G0232700 Rorug02G0232900 Rorug03G0137100 Rorug05G0565600 Rorug05G0566500
rosa_samantha	Rh1BG427300 Rh1CG440100 Rh2CG278100 Rh2CG278200 Rh2CG278700 Rh2CG278800 Rh2CG279100 Rh2DG314200 Rh2DG314300 Rh2DG314600 Rh3AG187200 Rh3DG211700 Rh3DG211800 Rh5AG356600 Rh6BG078000 Rh6BG078700 Rh6CG073300 Rh6DG070300 Rh6DG190200 Rh6DG274700 Rh7BG365900
rosa_wichuraiana	Rw0G018400 Rw1G040270 Rw2G023160 Rw2G023170 Rw2G023190 Rw2G023200 Rw2G023220 Rw2G023230 Rw3G017140 Rw3G017150 Rw4G012840 Rw6G007580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	527
AccB1I	GGYRCC	2 cut(s)	14, 98
AccBSI	CCGCTC	2 cut(s)	350, 827
AccII	CGCG	7 cut(s)	167, 240, 276, 488, 551, 589, 696
AccIII	TCCGGA	1 cut(s)	290
AclWI	GGATC	2 cut(s)	112, 240
AcoI	YGGCCR	2 cut(s)	159, 365
AcsI	RAATTY	1 cut(s)	652
AcvI	CACGTG	1 cut(s)	36
AcyI	GRCGYC	2 cut(s)	15, 99
AfaI	GTAC	3 cut(s)	335, 693, 854
AflIII	ACRYGT	1 cut(s)	33
AgeI	ACCGGT	1 cut(s)	414
AgsI	TTSAA	4 cut(s)	256, 877, 1008, 1103
AjiI	CACGTC	1 cut(s)	529
AjnI	CCWGG	1 cut(s)	209
AloI	GAACNNNNNNTCC	2 cut(s)	857, 889
AluBI	AGCT	7 cut(s)	331, 574, 679, 841, 959, 999, 1017
AluI	AGCT	7 cut(s)	331, 574, 679, 841, 959, 999, 1017
Alw21I	GWGCWC	4 cut(s)	273, 895, 1001, 1019
Alw26I	GTCTC	3 cut(s)	722, 746, 1029
AlwI	GGATC	2 cut(s)	112, 240
Ama87I	CYCGRG	2 cut(s)	202, 316
Aor13HI	TCCGGA	1 cut(s)	290
AoxI	GGCC	8 cut(s)	3, 66, 159, 277, 365, 474, 483, 716
ApaI	GGGCCC	1 cut(s)	70
ApeKI	GCWGC	6 cut(s)	39, 214, 234, 370, 679, 1078
ApoI	RAATTY	1 cut(s)	652
AsiGI	ACCGGT	1 cut(s)	414
AspLEI	GCGC	4 cut(s)	17, 101, 551, 589
AspS9I	GGNCC	7 cut(s)	55, 61, 66, 67, 278, 463, 717
AsuC2I	CCSGG	8 cut(s)	59, 65, 103, 260, 299, 317, 318, 783
AsuHPI	GGTGA	2 cut(s)	517, 802
AsuII	TTCGAA	1 cut(s)	964
AvaI	CYCGRG	2 cut(s)	202, 316
AvaII	GGWCC	3 cut(s)	55, 61, 463
BaeGI	GKGCMC	1 cut(s)	70
BanI	GGYRCC	2 cut(s)	14, 98
BanII	GRGCYC	6 cut(s)	70, 203, 209, 298, 1001, 1019
BbrPI	CACGTG	1 cut(s)	36
Bbv12I	GWGCWC	4 cut(s)	273, 895, 1001, 1019
BbvI	GCAGC	6 cut(s)	51, 201, 246, 357, 666, 1090
BccI	CCATC	2 cut(s)	391, 856
BceAI	ACGGC	2 cut(s)	358, 1091
BciT130I	CCWGG	1 cut(s)	211
BclI	TGATCA	1 cut(s)	507
BcnI	CCSGG	8 cut(s)	59, 65, 103, 260, 299, 317, 318, 783
BcoDI	GTCTC	3 cut(s)	722, 746, 1029
BfaI	CTAG	1 cut(s)	954
BfoI	RGCGCY	2 cut(s)	18, 102
BglI	GCCNNNNNGGC	1 cut(s)	482
BglII	AGATCT	1 cut(s)	1067
Bme1390I	CCNGG	9 cut(s)	59, 65, 103, 211, 260, 299, 317, 318, 783
Bme18I	GGWCC	3 cut(s)	55, 61, 463
BmeT110I	CYCGRG	2 cut(s)	202, 316
BmgBI	CACGTC	1 cut(s)	529
BmgT120I	GGNCC	7 cut(s)	55, 61, 66, 67, 278, 463, 717
BmiI	GGNNCC	7 cut(s)	16, 56, 62, 68, 100, 224, 295
BmrFI	CCNGG	9 cut(s)	59, 65, 103, 211, 260, 299, 317, 318, 783
BmsI	GCATC	2 cut(s)	489, 585
BpmI	CTGGAG	1 cut(s)	746
Bpu10I	CCTNAGC	1 cut(s)	992
Bpu14I	TTCGAA	1 cut(s)	964
BpuMI	CCSGG	8 cut(s)	59, 65, 103, 260, 299, 317, 318, 783
BsaAI	YACGTR	1 cut(s)	36
BsaBI	GATNNNNATC	1 cut(s)	512
BsaHI	GRCGYC	2 cut(s)	15, 99
BsaJI	CCNNGG	8 cut(s)	9, 209, 274, 297, 316, 317, 635, 896
BsaWI	WCCGGW	5 cut(s)	290, 414, 661, 812, 844
BsaXI	ACNNNNNCTCC	4 cut(s)	121, 151, 1039, 1069
Bse118I	RCCGGY	3 cut(s)	414, 472, 502
Bse1I	ACTGG	3 cut(s)	29, 427, 729
Bse8I	GATNNNNATC	1 cut(s)	512
BseAI	TCCGGA	1 cut(s)	290
BseBI	CCWGG	1 cut(s)	211
BseDI	CCNNGG	8 cut(s)	9, 209, 274, 297, 316, 317, 635, 896
BseGI	GGATG	1 cut(s)	906
BseJI	GATNNNNATC	1 cut(s)	512
BseMII	CTCAG	1 cut(s)	849
BseNI	ACTGG	3 cut(s)	29, 427, 729
BseRI	GAGGAG	3 cut(s)	128, 129, 244
BseSI	GKGCMC	1 cut(s)	70
BseX3I	CGGCCG	2 cut(s)	159, 365
BseXI	GCAGC	6 cut(s)	51, 201, 246, 357, 666, 1090
BseYI	CCCAGC	1 cut(s)	1092
BsgI	GTGCAG	1 cut(s)	58
Bsh1236I	CGCG	7 cut(s)	167, 240, 276, 488, 551, 589, 696
Bsh1285I	CGRYCG	5 cut(s)	162, 244, 368, 415, 492
BshFI	GGCC	8 cut(s)	5, 68, 161, 279, 367, 476, 485, 718
BshNI	GGYRCC	2 cut(s)	14, 98
BshTI	ACCGGT	1 cut(s)	414
BsiEI	CGRYCG	5 cut(s)	162, 244, 368, 415, 492
BsiHKAI	GWGCWC	4 cut(s)	273, 895, 1001, 1019
BsiHKCI	CYCGRG	2 cut(s)	202, 316
BsiWI	CGTACG	1 cut(s)	691
BslFI	GGGAC	1 cut(s)	334
BsmAI	GTCTC	3 cut(s)	722, 746, 1029
BsmFI	GGGAC	1 cut(s)	334
BsnI	GGCC	8 cut(s)	5, 68, 161, 279, 367, 476, 485, 718
BsoBI	CYCGRG	2 cut(s)	202, 316
Bsp119I	TTCGAA	1 cut(s)	964
Bsp120I	GGGCCC	1 cut(s)	66
Bsp1286I	GDGCHC	8 cut(s)	70, 203, 209, 273, 298, 895, 1001, 1019
Bsp13I	TCCGGA	1 cut(s)	290
Bsp1407I	TGTACA	1 cut(s)	852
Bsp143I	GATC	8 cut(s)	78, 117, 134, 245, 489, 507, 738, 1067
Bsp19I	CCATGG	1 cut(s)	9
BspANI	GGCC	8 cut(s)	5, 68, 161, 279, 367, 476, 485, 718
BspCNI	CTCAG	1 cut(s)	850
BspEI	TCCGGA	1 cut(s)	290
BspFNI	CGCG	7 cut(s)	167, 240, 276, 488, 551, 589, 696
BspLI	GGNNCC	7 cut(s)	16, 56, 62, 68, 100, 224, 295
BspPI	GGATC	2 cut(s)	112, 240
BspQI	GCTCTTC	1 cut(s)	817
BspT104I	TTCGAA	1 cut(s)	964
BspT107I	GGYRCC	2 cut(s)	14, 98
BsrBI	CCGCTC	2 cut(s)	350, 827
BsrFI	RCCGGY	3 cut(s)	414, 472, 502
BsrGI	TGTACA	1 cut(s)	852
BsrI	ACTGG	3 cut(s)	29, 427, 729
BssAI	RCCGGY	3 cut(s)	414, 472, 502
BssECI	CCNNGG	8 cut(s)	9, 209, 274, 297, 316, 317, 635, 896
BssMI	GATC	8 cut(s)	78, 117, 134, 245, 489, 507, 738, 1067
BssNI	GRCGYC	2 cut(s)	15, 99
BssT1I	CCWWGG	2 cut(s)	9, 635
Bst2UI	CCWGG	1 cut(s)	211
Bst4CI	ACNGT	2 cut(s)	757, 869
Bst6I	CTCTTC	2 cut(s)	744, 817
BstACI	GRCGYC	2 cut(s)	15, 99
BstAUI	TGTACA	1 cut(s)	852
BstBAI	YACGTR	1 cut(s)	36
BstBI	TTCGAA	1 cut(s)	964
BstC8I	GCNNGC	3 cut(s)	281, 474, 716
BstDEI	CTNAG	2 cut(s)	858, 992
BstDSI	CCRYGG	2 cut(s)	9, 274
BstEII	GGTNACC	1 cut(s)	777
BstF5I	GGATG	1 cut(s)	906
BstFNI	CGCG	7 cut(s)	167, 240, 276, 488, 551, 589, 696
BstH2I	RGCGCY	2 cut(s)	18, 102
BstHHI	GCGC	4 cut(s)	17, 101, 551, 589
BstKTI	GATC	8 cut(s)	81, 120, 137, 248, 492, 510, 741, 1070
BstMAI	GTCTC	3 cut(s)	722, 746, 1029
BstMBI	GATC	8 cut(s)	78, 117, 134, 245, 489, 507, 738, 1067
BstMCI	CGRYCG	5 cut(s)	162, 244, 368, 415, 492
BstMWI	GCNNNNNNNGC	9 cut(s)	36, 93, 193, 231, 367, 482, 595, 604, 890
BstNI	CCWGG	1 cut(s)	211
BstNSI	RCATGY	1 cut(s)	385
BstPI	GGTNACC	1 cut(s)	777
BstSCI	CCNGG	9 cut(s)	57, 63, 101, 209, 258, 297, 315, 316, 781
BstSLI	GKGCMC	1 cut(s)	70
BstUI	CGCG	7 cut(s)	167, 240, 276, 488, 551, 589, 696
BstV1I	GCAGC	6 cut(s)	51, 201, 246, 357, 666, 1090
BstX2I	RGATCY	2 cut(s)	117, 1067
BstYI	RGATCY	2 cut(s)	117, 1067
BstZI	CGGCCG	2 cut(s)	159, 365
BsuRI	GGCC	8 cut(s)	5, 68, 161, 279, 367, 476, 485, 718
BtgI	CCRYGG	2 cut(s)	9, 274
BtrI	CACGTC	1 cut(s)	529
BtsCI	GGATG	1 cut(s)	906
BtsI	GCAGTG	2 cut(s)	544, 879
BtsIMutI	CAGTG	4 cut(s)	544, 722, 855, 879
Cac8I	GCNNGC	3 cut(s)	281, 474, 716
CfoI	GCGC	4 cut(s)	17, 101, 551, 589
Cfr10I	RCCGGY	3 cut(s)	414, 472, 502
Cfr13I	GGNCC	7 cut(s)	55, 61, 66, 67, 278, 463, 717
Cfr42I	CCGCGG	1 cut(s)	277
Cfr9I	CCCGGG	1 cut(s)	316
Csp6I	GTAC	3 cut(s)	334, 692, 853
CspAI	ACCGGT	1 cut(s)	414
CviAII	CATG	3 cut(s)	10, 46, 382
CviQI	GTAC	3 cut(s)	334, 692, 853
DdeI	CTNAG	2 cut(s)	858, 992
DinI	GGCGCC	2 cut(s)	16, 100
DpnI	GATC	8 cut(s)	80, 119, 136, 247, 491, 509, 740, 1069
DpnII	GATC	8 cut(s)	78, 117, 134, 245, 489, 507, 738, 1067
DrdI	GACNNNNNNGTC	1 cut(s)	527
DseDI	GACNNNNNNGTC	1 cut(s)	527
EaeI	YGGCCR	2 cut(s)	159, 365
EagI	CGGCCG	2 cut(s)	159, 365
Eam1104I	CTCTTC	2 cut(s)	744, 817
EarI	CTCTTC	2 cut(s)	744, 817
EciI	GGCGGA	3 cut(s)	235, 804, 845
Ecl136II	GAGCTC	2 cut(s)	999, 1017
EclXI	CGGCCG	2 cut(s)	159, 365
Eco130I	CCWWGG	2 cut(s)	9, 635
Eco24I	GRGCYC	6 cut(s)	70, 203, 209, 298, 1001, 1019
Eco32I	GATATC	1 cut(s)	192
Eco47I	GGWCC	3 cut(s)	55, 61, 463
Eco52I	CGGCCG	2 cut(s)	159, 365
Eco53kI	GAGCTC	2 cut(s)	999, 1017
Eco72I	CACGTG	1 cut(s)	36
Eco88I	CYCGRG	2 cut(s)	202, 316
Eco91I	GGTNACC	1 cut(s)	777
EcoICRI	GAGCTC	2 cut(s)	999, 1017
EcoO109I	RGGNCCY	1 cut(s)	717
EcoO65I	GGTNACC	1 cut(s)	777
EcoRI	GAATTC	1 cut(s)	652
EcoRII	CCWGG	1 cut(s)	209
EcoRV	GATATC	1 cut(s)	192
EcoT14I	CCWWGG	2 cut(s)	9, 635
EcoT38I	GRGCYC	6 cut(s)	70, 203, 209, 298, 1001, 1019
EgeI	GGCGCC	2 cut(s)	16, 100
EheI	GGCGCC	2 cut(s)	16, 100
ErhI	CCWWGG	2 cut(s)	9, 635
FaeI	CATG	3 cut(s)	13, 49, 385
FaiI	YATR	6 cut(s)	11, 47, 383, 618, 770, 772
FaqI	GGGAC	1 cut(s)	334
FatI	CATG	3 cut(s)	9, 45, 381
FauI	CCCGC	3 cut(s)	288, 343, 477
FbaI	TGATCA	1 cut(s)	507
FokI	GGATG	1 cut(s)	913
FriOI	GRGCYC	6 cut(s)	70, 203, 209, 298, 1001, 1019
FspBI	CTAG	1 cut(s)	954
GlaI	GCGC	4 cut(s)	16, 100, 550, 588
GsaI	CCCAGC	1 cut(s)	1096
GsuI	CTGGAG	1 cut(s)	746
HaeII	RGCGCY	2 cut(s)	18, 102
HaeIII	GGCC	8 cut(s)	5, 68, 161, 279, 367, 476, 485, 718
HhaI	GCGC	4 cut(s)	17, 101, 551, 589
Hin1I	GRCGYC	2 cut(s)	15, 99
Hin1II	CATG	3 cut(s)	13, 49, 385
Hin6I	GCGC	4 cut(s)	15, 99, 549, 587
HinP1I	GCGC	4 cut(s)	15, 99, 549, 587
HincII	GTYRAC	1 cut(s)	432
HindII	GTYRAC	1 cut(s)	432
HphI	GGTGA	2 cut(s)	517, 802
Hpy166II	GTNNAC	4 cut(s)	432, 810, 853, 855
Hpy188I	TCNGA	9 cut(s)	388, 455, 583, 651, 738, 743, 897, 1021, 1047
Hpy188III	TCNNGA	5 cut(s)	121, 291, 394, 532, 985
Hpy8I	GTNNAC	4 cut(s)	432, 810, 853, 855
Hpy99I	CGWCG	3 cut(s)	344, 347, 379
HpyAV	CCTTC	1 cut(s)	475
HpyCH4III	ACNGT	2 cut(s)	757, 869
HpyCH4IV	ACGT	3 cut(s)	35, 528, 690
HpyCH4V	TGCA	1 cut(s)	39
HpyF10VI	GCNNNNNNNGC	9 cut(s)	36, 93, 193, 231, 367, 482, 595, 604, 890
HpyF3I	CTNAG	2 cut(s)	858, 992
HpySE526I	ACGT	3 cut(s)	35, 528, 690
Hsp92I	GRCGYC	2 cut(s)	15, 99
Hsp92II	CATG	3 cut(s)	13, 49, 385
HspAI	GCGC	4 cut(s)	15, 99, 549, 587
KasI	GGCGCC	2 cut(s)	14, 98
Kpn2I	TCCGGA	1 cut(s)	290
KroI	GCCGGC	1 cut(s)	472
KroNI	GCCGGC	1 cut(s)	474
Ksp22I	TGATCA	1 cut(s)	507
KspI	CCGCGG	1 cut(s)	277
Kzo9I	GATC	8 cut(s)	78, 117, 134, 245, 489, 507, 738, 1067
LguI	GCTCTTC	1 cut(s)	817
Lsp1109I	GCAGC	6 cut(s)	51, 201, 246, 357, 666, 1090
LweI	GCATC	2 cut(s)	489, 585
MaeI	CTAG	1 cut(s)	954
MaeII	ACGT	3 cut(s)	35, 528, 690
MaeIII	GTNAC	2 cut(s)	686, 777
MalI	GATC	8 cut(s)	80, 119, 136, 247, 491, 509, 740, 1069
MbiI	CCGCTC	2 cut(s)	350, 827
MboI	GATC	8 cut(s)	78, 117, 134, 245, 489, 507, 738, 1067
MfeI	CAATTG	1 cut(s)	437
MflI	RGATCY	2 cut(s)	117, 1067
MhlI	GDGCHC	8 cut(s)	70, 203, 209, 273, 298, 895, 1001, 1019
MluCI	AATT	2 cut(s)	437, 652
Mly113I	GGCGCC	2 cut(s)	15, 99
MlyI	GAGTC	4 cut(s)	68, 503, 548, 1031
MmeI	TCCRAC	3 cut(s)	366, 433, 1025
MroI	TCCGGA	1 cut(s)	290
MroNI	GCCGGC	1 cut(s)	472
MslI	CAYNNNNRTG	1 cut(s)	860
MspA1I	CMGCKG	4 cut(s)	276, 370, 679, 1081
MspR9I	CCNGG	9 cut(s)	59, 65, 103, 211, 260, 299, 317, 318, 783
MunI	CAATTG	1 cut(s)	437
MvaI	CCWGG	1 cut(s)	211
MvnI	CGCG	7 cut(s)	167, 240, 276, 488, 551, 589, 696
MwoI	GCNNNNNNNGC	9 cut(s)	36, 93, 193, 231, 367, 482, 595, 604, 890
NaeI	GCCGGC	1 cut(s)	474
NarI	GGCGCC	2 cut(s)	15, 99
NciI	CCSGG	8 cut(s)	59, 65, 103, 260, 299, 317, 318, 783
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	8 cut(s)	78, 117, 134, 245, 489, 507, 738, 1067
NgoMIV	GCCGGC	1 cut(s)	472
NlaIII	CATG	3 cut(s)	13, 49, 385
NlaIV	GGNNCC	7 cut(s)	16, 56, 62, 68, 100, 224, 295
NmeAIII	GCCGAG	1 cut(s)	708
NmuCI	GTSAC	1 cut(s)	686
NspI	RCATGY	1 cut(s)	385
NspV	TTCGAA	1 cut(s)	964
PciSI	GCTCTTC	1 cut(s)	817
PcsI	WCGNNNNNNNCGW	3 cut(s)	200, 485, 914
PdiI	GCCGGC	1 cut(s)	474
PfeI	GAWTC	6 cut(s)	49, 287, 578, 646, 792, 1084
Pfl23II	CGTACG	1 cut(s)	691
PflFI	GACNNNGTC	1 cut(s)	538
PinAI	ACCGGT	1 cut(s)	414
Ple19I	CGATCG	1 cut(s)	492
PleI	GAGTC	4 cut(s)	68, 502, 547, 1030
PluTI	GGCGCC	2 cut(s)	18, 102
PmaCI	CACGTG	1 cut(s)	36
PmlI	CACGTG	1 cut(s)	36
PpsI	GAGTC	4 cut(s)	68, 502, 547, 1030
Ppu21I	YACGTR	1 cut(s)	36
Psp124BI	GAGCTC	2 cut(s)	1001, 1019
Psp6I	CCWGG	1 cut(s)	209
PspCI	CACGTG	1 cut(s)	36
PspEI	GGTNACC	1 cut(s)	777
PspFI	CCCAGC	1 cut(s)	1092
PspGI	CCWGG	1 cut(s)	209
PspLI	CGTACG	1 cut(s)	691
PspN4I	GGNNCC	7 cut(s)	16, 56, 62, 68, 100, 224, 295
PspOMI	GGGCCC	1 cut(s)	66
PspPI	GGNCC	7 cut(s)	55, 61, 66, 67, 278, 463, 717
PsuI	RGATCY	2 cut(s)	117, 1067
PsyI	GACNNNGTC	1 cut(s)	538
PvuI	CGATCG	1 cut(s)	492
PvuII	CAGCTG	1 cut(s)	679
RsaI	GTAC	3 cut(s)	335, 693, 854
RsaNI	GTAC	3 cut(s)	334, 692, 853
RseI	CAYNNNNRTG	1 cut(s)	860
SacI	GAGCTC	2 cut(s)	1001, 1019
SacII	CCGCGG	1 cut(s)	277
SapI	GCTCTTC	1 cut(s)	817
Sau3AI	GATC	8 cut(s)	78, 117, 134, 245, 489, 507, 738, 1067
Sau96I	GGNCC	7 cut(s)	55, 61, 66, 67, 278, 463, 717
SchI	GAGTC	4 cut(s)	68, 503, 548, 1031
ScrFI	CCNGG	9 cut(s)	59, 65, 103, 211, 260, 299, 317, 318, 783
SduI	GDGCHC	8 cut(s)	70, 203, 209, 273, 298, 895, 1001, 1019
SfaNI	GCATC	2 cut(s)	489, 585
SfiI	GGCCNNNNNGGCC	1 cut(s)	482
SfoI	GGCGCC	2 cut(s)	16, 100
Sfr303I	CCGCGG	1 cut(s)	277
SfuI	TTCGAA	1 cut(s)	964
SgrBI	CCGCGG	1 cut(s)	277
SinI	GGWCC	3 cut(s)	55, 61, 463
SmaI	CCCGGG	1 cut(s)	318
SmiMI	CAYNNNNRTG	1 cut(s)	860
Sse9I	AATT	2 cut(s)	437, 652
SspDI	GGCGCC	2 cut(s)	14, 98
SspMI	CTAG	1 cut(s)	954
SstI	GAGCTC	2 cut(s)	1001, 1019
StyD4I	CCNGG	9 cut(s)	57, 63, 101, 209, 258, 297, 315, 316, 781
StyI	CCWWGG	2 cut(s)	9, 635
TaaI	ACNGT	2 cut(s)	757, 869
TaiI	ACGT	3 cut(s)	38, 531, 693
TaqII	GACCGA	1 cut(s)	258
TasI	AATT	2 cut(s)	437, 652
TatI	WGTACW	2 cut(s)	333, 852
TfiI	GAWTC	6 cut(s)	49, 287, 578, 646, 792, 1084
TscAI	CASTG	4 cut(s)	551, 729, 862, 886
TseFI	GTSAC	1 cut(s)	686
TseI	GCWGC	6 cut(s)	39, 214, 234, 370, 679, 1078
Tsp45I	GTSAC	1 cut(s)	686
TspDTI	ATGAA	1 cut(s)	97
TspGWI	ACGGA	3 cut(s)	320, 360, 551
TspMI	CCCGGG	1 cut(s)	316
TspRI	CASTG	4 cut(s)	551, 729, 862, 886
Tth111I	GACNNNGTC	1 cut(s)	538
VpaK11BI	GGWCC	3 cut(s)	55, 61, 463
XapI	RAATTY	1 cut(s)	652
XceI	RCATGY	1 cut(s)	385
XmaI	CCCGGG	1 cut(s)	316
XspI	CTAG	1 cut(s)	954

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.