RchiOBHm_Chr6g0284781

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000359
Physical Location & Seq
Reverse (-)
48108190 .. 48109021
832 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25540

Sequence Viewer

Length: 555 bp
ATGAAATCCCAAAAGAAGACGGATATTCTAGTTGTTCTTTTTCTTGTCCGGCAGTTCTTGATGATCTCTCTGGTTCAAGGCGAAGTACATTTTTATGATTTTGTAGTAAGTAAGGAAGAAAAACTTCACCGGGTTATGCGAAACAGAGAGCATGTTTGTTGTAAACGACATTTTCCCAGGGCCGGGATACGAGTTCATAAAGGGGATACGATCTATGTAAATGTTCATAATCAAGGATATTATGGTCTCACTATTCACTGGCATGGAATAATGCAATCAAGAAATCCATGGTCAGATGGTCCTGAGTATATCACACAGTGTCCAATCCAACCAGGGACTAATTTCACATACGAGGTCTTGTTATCTACGGAAGAAGGAACTGTATGGTGGCATGCTCATGGTGACTGGACGCGAGCCAGCGTTCGTGGCGCCATTGTCATCTTGCCTACTGTTGGAAGCACATATCCATTTCCTCAACCCGATGAAGATGAGGTCATTATATTATCATCCTGGTACTTGGGAGATTTGAAAGCAAGGGTTGATGATAGGCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko01100 map00053 map01100
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

184

Amino Acids

21.39

Weight (kDa)

7.16

Isoelectric Point (pI)

30.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 48 - 149 3.7e-32 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000359)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48100
fragaria_vesca FvH4_1g24380 FvH4_2g05800 FvH4_5g30730
malus_domestica MD01G1234900.v1.1 MD01G1235100.v1.1 MD01G1235200.v1.1 MD07G1307400.v1.1 MD07G1308000.v1.1 MD10G1042300.v1.1 MD10G1042400.v1.1 MD10G1042500.v1.1 MD10G1042700.v1.1
prunus_persica Prupe.2G325200_v2.0.a1 Prupe.6G242000_v2.0.a1 Prupe.8G046800_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1
pyrus_communis pycom01g24320 pycom01g24330 pycom07g28020 pycom10g02950 pycom17g03690
rosa_chinensis RchiOBHm_Chr1g0384031 RchiOBHm_Chr2g0120941 RchiOBHm_Chr2g0120971 RchiOBHm_Chr2g0121051 RchiOBHm_Chr2g0121181 RchiOBHm_Chr2g0121211 RchiOBHm_Chr3g0473931 RchiOBHm_Chr3g0473941 RchiOBHm_Chr6g0257941 RchiOBHm_Chr6g0284781
rosa_laevigata RLG00000008541 RLG00000014737 RLG00000018604 RLG00000018607 RLG00000018608 RLG00000018610 RLG00000018611 RLG00000018613 RLG00000023967 RLG00000023970 RLG00000026078 RLG00000035183
rosa_multiflora Rmu_sc0000079.1_g000043 Rmu_sc0000079.1_g000062 Rmu_sc0000079.1_g000069 Rmu_sc0000621.1_g000019 Rmu_sc0000621.1_g000025 Rmu_sc0000621.1_g000041 Rmu_sc0000652.1_g000018 Rmu_sc0002414.1_g000030 Rmu_sc0002414.1_g000033 Rmu_sc0002843.1_g000016 Rmu_sc0005137.1_g000035 Rmu_sc0005139.1_g000021
rosa_roxburghii Rroxscaffold_2G00122530 Rroxscaffold_2G00122570 Rroxscaffold_2G00122580 Rroxscaffold_2G00122650 Rroxscaffold_4G00277080 Rroxscaffold_6G00407610 Rroxscaffold_6G00407620 Rroxscaffold_7G00209050
rosa_rugosa Rorug01G0444300 Rorug02G0232700 Rorug02G0232700 Rorug02G0232900 Rorug03G0137100 Rorug05G0565600 Rorug05G0566500
rosa_samantha Rh1BG427300 Rh1CG440100 Rh2CG278100 Rh2CG278200 Rh2CG278700 Rh2CG278800 Rh2CG279100 Rh2DG314200 Rh2DG314300 Rh2DG314600 Rh3AG187200 Rh3DG211700 Rh3DG211800 Rh5AG356600 Rh6BG078000 Rh6BG078700 Rh6CG073300 Rh6DG070300 Rh6DG190200 Rh6DG274700 Rh7BG365900
rosa_wichuraiana Rw0G018400 Rw1G040270 Rw2G023160 Rw2G023170 Rw2G023190 Rw2G023200 Rw2G023220 Rw2G023230 Rw3G017140 Rw3G017150 Rw4G012840 Rw6G007580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 428
AccII CGCG 1 cut(s) 412
AcyI GRCGYC 1 cut(s) 429
AdeI CACNNNGTG 1 cut(s) 318
AfaI GTAC 2 cut(s) 87, 515
AfiI CCNNNNNNNGG 3 cut(s) 182, 183, 452
AgsI TTSAA 2 cut(s) 77, 529
AjnI CCWGG 3 cut(s) 176, 331, 509
Alw26I GTCTC 1 cut(s) 251
AoxI GGCC 1 cut(s) 180
Asp700I GAANNNNTTC 1 cut(s) 123
AspLEI GCGC 1 cut(s) 431
AspS9I GGNCC 2 cut(s) 180, 299
AsuC2I CCSGG 2 cut(s) 131, 184
AsuHPI GGTGA 2 cut(s) 119, 413
AvaII GGWCC 1 cut(s) 299
BanI GGYRCC 1 cut(s) 428
BbsI GAAGAC 1 cut(s) 23
BccI CCATC 1 cut(s) 290
BciT130I CCWGG 3 cut(s) 178, 333, 511
BciVI GTATCC 2 cut(s) 180, 199
BcnI CCSGG 2 cut(s) 131, 184
BcoDI GTCTC 1 cut(s) 251
BfaI CTAG 1 cut(s) 29
BfmI CTRYAG 1 cut(s) 551
BfoI RGCGCY 1 cut(s) 432
BfuI GTATCC 2 cut(s) 180, 199
Bme1390I CCNGG 5 cut(s) 131, 178, 184, 333, 511
Bme18I GGWCC 1 cut(s) 299
BmgT120I GGNCC 2 cut(s) 180, 299
BmiI GGNNCC 1 cut(s) 430
BmrFI CCNGG 5 cut(s) 131, 178, 184, 333, 511
BpiI GAAGAC 1 cut(s) 23
BpuMI CCSGG 2 cut(s) 131, 184
BsaHI GRCGYC 1 cut(s) 429
BsaI GGTCTC 1 cut(s) 251
BsaJI CCNNGG 4 cut(s) 176, 177, 287, 332
Bsc4I CCNNNNNNNGG 3 cut(s) 182, 183, 452
Bse1I ACTGG 2 cut(s) 263, 410
BseBI CCWGG 3 cut(s) 178, 333, 511
BseDI CCNNGG 4 cut(s) 176, 177, 287, 332
BseGI GGATG 1 cut(s) 506
BseLI CCNNNNNNNGG 3 cut(s) 182, 183, 452
BseMII CTCAG 1 cut(s) 294
BseNI ACTGG 2 cut(s) 263, 410
Bsh1236I CGCG 1 cut(s) 412
BshFI GGCC 1 cut(s) 182
BshNI GGYRCC 1 cut(s) 428
BsiSI CCGG 3 cut(s) 49, 130, 183
BslFI GGGAC 1 cut(s) 349
BslI CCNNNNNNNGG 3 cut(s) 182, 183, 452
BsmAI GTCTC 1 cut(s) 251
BsmFI GGGAC 1 cut(s) 349
BsnI GGCC 1 cut(s) 182
Bso31I GGTCTC 1 cut(s) 251
Bsp143I GATC 2 cut(s) 63, 210
Bsp19I CCATGG 1 cut(s) 287
BspANI GGCC 1 cut(s) 182
BspCNI CTCAG 1 cut(s) 295
BspFNI CGCG 1 cut(s) 412
BspLI GGNNCC 1 cut(s) 430
BspT107I GGYRCC 1 cut(s) 428
BspTNI GGTCTC 1 cut(s) 251
BsrI ACTGG 2 cut(s) 263, 410
BssECI CCNNGG 4 cut(s) 176, 177, 287, 332
BssMI GATC 2 cut(s) 63, 210
BssNI GRCGYC 1 cut(s) 429
BssT1I CCWWGG 1 cut(s) 287
Bst2UI CCWGG 3 cut(s) 178, 333, 511
Bst4CI ACNGT 3 cut(s) 318, 382, 451
BstACI GRCGYC 1 cut(s) 429
BstC8I GCNNGC 3 cut(s) 393, 414, 418
BstDEI CTNAG 1 cut(s) 303
BstDSI CCRYGG 1 cut(s) 287
BstF5I GGATG 1 cut(s) 506
BstFNI CGCG 1 cut(s) 412
BstH2I RGCGCY 1 cut(s) 432
BstHHI GCGC 1 cut(s) 431
BstKTI GATC 2 cut(s) 66, 213
BstMAI GTCTC 1 cut(s) 251
BstMBI GATC 2 cut(s) 63, 210
BstMWI GCNNNNNNNGC 1 cut(s) 426
BstNI CCWGG 3 cut(s) 178, 333, 511
BstNSI RCATGY 2 cut(s) 155, 395
BstSCI CCNGG 5 cut(s) 129, 176, 182, 331, 509
BstSFI CTRYAG 1 cut(s) 551
BstUI CGCG 1 cut(s) 412
BstV2I GAAGAC 1 cut(s) 23
BsuI GTATCC 2 cut(s) 180, 199
BsuRI GGCC 1 cut(s) 182
BtgI CCRYGG 1 cut(s) 287
BtsCI GGATG 1 cut(s) 506
BtsIMutI CAGTG 2 cut(s) 256, 323
Cac8I GCNNGC 3 cut(s) 393, 414, 418
CfoI GCGC 1 cut(s) 431
Cfr13I GGNCC 2 cut(s) 180, 299
CseI GACGC 1 cut(s) 418
Csp6I GTAC 2 cut(s) 86, 514
CviAII CATG 5 cut(s) 152, 263, 288, 392, 398
CviJI RGCY 3 cut(s) 182, 416, 550
CviKI_1 RGCY 3 cut(s) 182, 416, 550
CviQI GTAC 2 cut(s) 86, 514
DdeI CTNAG 1 cut(s) 303
DinI GGCGCC 1 cut(s) 430
DpnI GATC 2 cut(s) 65, 212
DpnII GATC 2 cut(s) 63, 210
DraIII CACNNNGTG 1 cut(s) 318
Eco130I CCWWGG 1 cut(s) 287
Eco31I GGTCTC 1 cut(s) 251
Eco47I GGWCC 1 cut(s) 299
EcoRII CCWGG 3 cut(s) 176, 331, 509
EcoT14I CCWWGG 1 cut(s) 287
EgeI GGCGCC 1 cut(s) 430
EheI GGCGCC 1 cut(s) 430
ErhI CCWWGG 1 cut(s) 287
FaeI CATG 5 cut(s) 155, 266, 291, 395, 401
FalI AAGNNNNNCTT 2 cut(s) 108, 140
FaqI GGGAC 1 cut(s) 349
FatI CATG 5 cut(s) 151, 262, 287, 391, 397
FokI GGATG 1 cut(s) 493
FspBI CTAG 1 cut(s) 29
GlaI GCGC 1 cut(s) 430
HaeII RGCGCY 1 cut(s) 432
HaeIII GGCC 1 cut(s) 182
HapII CCGG 3 cut(s) 49, 130, 183
HgaI GACGC 1 cut(s) 418
HhaI GCGC 1 cut(s) 431
Hin1I GRCGYC 1 cut(s) 429
Hin1II CATG 5 cut(s) 155, 266, 291, 395, 401
Hin6I GCGC 1 cut(s) 429
HinP1I GCGC 1 cut(s) 429
HpaII CCGG 3 cut(s) 49, 130, 183
HphI GGTGA 2 cut(s) 119, 413
Hpy166II GTNNAC 1 cut(s) 164
Hpy188I TCNGA 1 cut(s) 295
Hpy188III TCNNGA 3 cut(s) 58, 279, 302
Hpy8I GTNNAC 1 cut(s) 164
HpyAV CCTTC 1 cut(s) 368
HpyCH4III ACNGT 3 cut(s) 318, 382, 451
HpyCH4V TGCA 1 cut(s) 274
HpyF10VI GCNNNNNNNGC 1 cut(s) 426
HpyF3I CTNAG 1 cut(s) 303
Hsp92I GRCGYC 1 cut(s) 429
Hsp92II CATG 5 cut(s) 155, 266, 291, 395, 401
HspAI GCGC 1 cut(s) 429
KasI GGCGCC 1 cut(s) 428
Kzo9I GATC 2 cut(s) 63, 210
MaeI CTAG 1 cut(s) 29
MaeIII GTNAC 1 cut(s) 401
MalI GATC 2 cut(s) 65, 212
MboI GATC 2 cut(s) 63, 210
MboII GAAGA 4 cut(s) 28, 128, 383, 497
MluCI AATT 1 cut(s) 340
Mly113I GGCGCC 1 cut(s) 429
MmeI TCCRAC 2 cut(s) 352, 433
MnlI CCTC 3 cut(s) 346, 483, 484
MroXI GAANNNNTTC 1 cut(s) 123
MslI CAYNNNNRTG 3 cut(s) 93, 261, 396
MspI CCGG 3 cut(s) 49, 130, 183
MspR9I CCNGG 5 cut(s) 131, 178, 184, 333, 511
MvaI CCWGG 3 cut(s) 178, 333, 511
MvnI CGCG 1 cut(s) 412
MwoI GCNNNNNNNGC 1 cut(s) 426
NarI GGCGCC 1 cut(s) 429
NciI CCSGG 2 cut(s) 131, 184
NcoI CCATGG 1 cut(s) 287
NdeII GATC 2 cut(s) 63, 210
NlaIII CATG 5 cut(s) 155, 266, 291, 395, 401
NlaIV GGNNCC 1 cut(s) 430
NmuCI GTSAC 1 cut(s) 401
NspI RCATGY 2 cut(s) 155, 395
PaeI GCATGC 1 cut(s) 395
PasI CCCWGGG 1 cut(s) 177
PdmI GAANNNNTTC 1 cut(s) 123
PluTI GGCGCC 1 cut(s) 432
Psp6I CCWGG 3 cut(s) 176, 331, 509
PspGI CCWGG 3 cut(s) 176, 331, 509
PspN4I GGNNCC 1 cut(s) 430
PspPI GGNCC 2 cut(s) 180, 299
RsaI GTAC 2 cut(s) 87, 515
RsaNI GTAC 2 cut(s) 86, 514
RseI CAYNNNNRTG 3 cut(s) 93, 261, 396
Sau3AI GATC 2 cut(s) 63, 210
Sau96I GGNCC 2 cut(s) 180, 299
ScrFI CCNGG 5 cut(s) 131, 178, 184, 333, 511
SetI ASST 2 cut(s) 357, 495
SfcI CTRYAG 1 cut(s) 551
SfoI GGCGCC 1 cut(s) 430
SinI GGWCC 1 cut(s) 299
SmiMI CAYNNNNRTG 3 cut(s) 93, 261, 396
SphI GCATGC 1 cut(s) 395
Sse9I AATT 1 cut(s) 340
SspDI GGCGCC 1 cut(s) 428
SspMI CTAG 1 cut(s) 29
StyD4I CCNGG 5 cut(s) 129, 176, 182, 331, 509
StyI CCWWGG 1 cut(s) 287
TaaI ACNGT 3 cut(s) 318, 382, 451
TasI AATT 1 cut(s) 340
TatI WGTACW 1 cut(s) 85
TscAI CASTG 2 cut(s) 263, 323
TseFI GTSAC 1 cut(s) 401
Tsp45I GTSAC 1 cut(s) 401
TspDTI ATGAA 4 cut(s) 17, 185, 215, 498
TspGWI ACGGA 2 cut(s) 35, 383
TspRI CASTG 2 cut(s) 263, 323
VpaK11BI GGWCC 1 cut(s) 299
XceI RCATGY 2 cut(s) 155, 395
XmnI GAANNNNTTC 1 cut(s) 123
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.